© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2399 |
| Gene name | |
| Location | Contig_1570:5657..5876 |
| Strand | - |
| Gene length (bp) | 219 |
| Transcript length (bp) | 219 |
| Coding sequence length (bp) | 219 |
| Protein length (aa) | 73 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09384 | UTP15_C | UTP15 C terminal | 6.3E-17 | 1 | 66 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005730 | nucleolus | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0008152 | metabolic process | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0009987 | cellular process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5675 | 0.3608 | 0.0681 | 0.1787 | 0.3728 | 0.0023 | 0.1128 | 0.4151 | 0.3557 | 0.0354 |
| Orthofinder run ID | 4 |
| Orthogroup | 9054 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|2399 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2399 LCARVCDPRYVSVCVEMAQHLLDLYADAAAAEPALHEALRTLHRRVRLEVERAQLASQTGGMLESLVRGAAA* |
| Coding | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |
| Transcript | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |
| Gene | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |