Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2399
Gene name
LocationContig_1570:5657..5876
Strand-
Gene length (bp)219
Transcript length (bp)219
Coding sequence length (bp)219
Protein length (aa) 73

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09384 UTP15_C UTP15 C terminal 6.3E-17 1 66

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005730 nucleolus Yes
GO:0006364 rRNA processing Yes
GO:0008152 metabolic process No
GO:0016072 rRNA metabolic process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0043228 non-membrane-bounded organelle No
GO:0043226 organelle No
GO:0071704 organic substance metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043229 intracellular organelle No
GO:0009987 cellular process No
GO:0090304 nucleic acid metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044238 primary metabolic process No
GO:0034470 ncRNA processing No
GO:0110165 cellular anatomical entity No
GO:0006725 cellular aromatic compound metabolic process No
GO:0005575 cellular_component No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0043170 macromolecule metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5675 0.3608 0.0681 0.1787 0.3728 0.0023 0.1128 0.4151 0.3557 0.0354

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9054
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2399 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2399
LCARVCDPRYVSVCVEMAQHLLDLYADAAAAEPALHEALRTLHRRVRLEVERAQLASQTGGMLESLVRGAAA*
Coding >Hirsu2|2399
CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC
GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC
GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA
Transcript >Hirsu2|2399
CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC
GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC
GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA
Gene >Hirsu2|2399
CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC
GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC
GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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