Protein ID | Hirsu2|2399 |
Gene name | |
Location | Contig_1570:5657..5876 |
Strand | - |
Gene length (bp) | 219 |
Transcript length (bp) | 219 |
Coding sequence length (bp) | 219 |
Protein length (aa) | 73 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09384 | UTP15_C | UTP15 C terminal | 6.3E-17 | 1 | 66 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005730 | nucleolus | Yes |
GO:0006364 | rRNA processing | Yes |
GO:0008152 | metabolic process | No |
GO:0016072 | rRNA metabolic process | No |
GO:0043232 | intracellular non-membrane-bounded organelle | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0008150 | biological_process | No |
GO:0043228 | non-membrane-bounded organelle | No |
GO:0043226 | organelle | No |
GO:0071704 | organic substance metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0034660 | ncRNA metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0043229 | intracellular organelle | No |
GO:0009987 | cellular process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0034470 | ncRNA processing | No |
GO:0110165 | cellular anatomical entity | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0005575 | cellular_component | No |
GO:0044237 | cellular metabolic process | No |
GO:0006396 | RNA processing | No |
GO:0043170 | macromolecule metabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 32 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2399 LCARVCDPRYVSVCVEMAQHLLDLYADAAAAEPALHEALRTLHRRVRLEVERAQLASQTGGMLESLVRGAAA* |
Coding | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |
Transcript | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |
Gene | >Hirsu2|2399 CTGTGCGCCCGCGTCTGCGACCCGCGCTACGTCAGCGTCTGCGTCGAGATGGCGCAGCACCTGCTCGACCTGTAC GCCGACGCCGCCGCCGCCGAGCCCGCCCTGCACGAGGCGCTGCGCACCCTGCACCGCCGCGTCCGGCTCGAGGTC GAGCGCGCCCAGCTGGCGAGCCAGACGGGCGGCATGCTCGAGAGCCTCGTCCGCGGCGCCGCCGCCTGA |