Protein ID | Hirsu2|2388 |
Gene name | |
Location | Contig_157:10747..12166 |
Strand | - |
Gene length (bp) | 1419 |
Transcript length (bp) | 1290 |
Coding sequence length (bp) | 1290 |
Protein length (aa) | 430 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08574 | Iwr1 | Transcription factor Iwr1 | 6.4E-15 | 289 | 359 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.1404 | 0.9273 | 0.0667 | 0.0153 | 0.129 | 0.0007 | 0.0328 | 0.0375 | 0.03 | 0.0006 |
Orthofinder run ID | 4 |
Orthogroup | 2068 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2388 MSIPPQLIRVKRKRVEDAPVTFLQFDGGQKRHRSGSNWAYQRRNAASPAAPGVAPQNDKPVIHVSRPAKPPAILD TLHEAPSPPGVLASRSTTSGSRDDDVDVPAPRRFHIARSAIPAGKDADVHAGAPKHHGSVPAVFVERSRREQVTK SRRLAAPRDTSQMETQMAPPSQVSEHATAETPLKRPGVANKARGQQKIGASHAPLPTSLMNRHTGDMDKIAADMN QWVLNEMRANFDSMEQEKQQQAQRVRFKPKPPAQRYRERYPEAAAVGGAQDVTMVDASDDEGDDDWVIEEYVRIP AHSVALDVAPSDIGVLVLDDDEDSLLFFGPMHDEEDDVDEDDEDENAENHYTADYPEDEVESDDEYGRHAYGYRN GTASDDEEFDAVYHSEEEGEQEDDGALFSGQGEGDEEARMARIRAYMKRNSAFP* |
Coding | >Hirsu2|2388 ATGTCGATCCCTCCACAGCTCATCCGCGTCAAGCGAAAACGCGTTGAGGATGCTCCGGTGACGTTCCTTCAGTTC GATGGAGGCCAGAAACGGCACCGCAGTGGCAGCAACTGGGCCTATCAGCGACGAAATGCCGCATCTCCAGCAGCT CCCGGCGTTGCCCCCCAAAATGACAAGCCCGTAATCCACGTCTCCCGCCCCGCTAAGCCTCCGGCTATTCTCGAT ACTCTTCATGAGGCGCCCTCGCCTCCCGGCGTCCTTGCCTCTCGTTCGACCACCTCGGGCAGTCGAGACGATGAC GTCGACGTGCCGGCGCCCCGCAGATTTCACATCGCGCGCTCCGCAATACCGGCAGGAAAAGATGCGGATGTTCAT GCCGGTGCTCCGAAGCATCATGGGAGCGTGCCCGCTGTGTTCGTCGAGCGAAGCCGAAGAGAGCAGGTGACGAAA TCCAGACGTCTCGCGGCCCCGAGGGATACCTCGCAAATGGAAACGCAGATGGCGCCGCCCAGCCAGGTCTCTGAG CACGCGACAGCGGAAACGCCGCTGAAGCGACCAGGCGTGGCGAACAAGGCTCGAGGGCAACAGAAGATTGGCGCT TCTCATGCTCCTCTACCGACTTCGCTCATGAACCGGCACACGGGAGACATGGACAAGATCGCGGCCGACATGAAC CAATGGGTTCTCAACGAGATGCGAGCCAACTTCGACAGCATGGAGCAGGAGAAGCAGCAGCAGGCTCAGAGAGTC AGGTTCAAGCCCAAGCCGCCCGCTCAGAGATATCGCGAACGCTATCCCGAAGCGGCAGCAGTTGGCGGAGCCCAG GACGTGACCATGGTCGACGCCAGCGACGACGAGGGCGACGACGACTGGGTCATTGAGGAATACGTTCGCATTCCG GCCCATTCGGTAGCCTTGGACGTCGCGCCCTCGGACATCGGCGTCCTCGTGCTGGACGACGACGAGGACAGCCTG CTCTTTTTCGGGCCCATGCACGACGAGGAAGATGACGTCGACGAAGACGACGAGGACGAGAACGCCGAGAACCAC TACACGGCAGACTACCCGGAAGACGAGGTGGAGTCGGACGACGAGTACGGCCGGCACGCCTACGGCTACCGCAAC GGGACAGCGTCGGACGACGAGGAGTTCGACGCTGTCTACCACAGCGAGGAGGAGGGGGAGCAGGAGGATGACGGG GCGCTCTTTAGCGGTCAGGGCGAGGGCGACGAAGAGGCCAGGATGGCACGGATCCGGGCCTACATGAAACGCAAC TCGGCTTTCCCATAA |
Transcript | >Hirsu2|2388 ATGTCGATCCCTCCACAGCTCATCCGCGTCAAGCGAAAACGCGTTGAGGATGCTCCGGTGACGTTCCTTCAGTTC GATGGAGGCCAGAAACGGCACCGCAGTGGCAGCAACTGGGCCTATCAGCGACGAAATGCCGCATCTCCAGCAGCT CCCGGCGTTGCCCCCCAAAATGACAAGCCCGTAATCCACGTCTCCCGCCCCGCTAAGCCTCCGGCTATTCTCGAT ACTCTTCATGAGGCGCCCTCGCCTCCCGGCGTCCTTGCCTCTCGTTCGACCACCTCGGGCAGTCGAGACGATGAC GTCGACGTGCCGGCGCCCCGCAGATTTCACATCGCGCGCTCCGCAATACCGGCAGGAAAAGATGCGGATGTTCAT GCCGGTGCTCCGAAGCATCATGGGAGCGTGCCCGCTGTGTTCGTCGAGCGAAGCCGAAGAGAGCAGGTGACGAAA TCCAGACGTCTCGCGGCCCCGAGGGATACCTCGCAAATGGAAACGCAGATGGCGCCGCCCAGCCAGGTCTCTGAG CACGCGACAGCGGAAACGCCGCTGAAGCGACCAGGCGTGGCGAACAAGGCTCGAGGGCAACAGAAGATTGGCGCT TCTCATGCTCCTCTACCGACTTCGCTCATGAACCGGCACACGGGAGACATGGACAAGATCGCGGCCGACATGAAC CAATGGGTTCTCAACGAGATGCGAGCCAACTTCGACAGCATGGAGCAGGAGAAGCAGCAGCAGGCTCAGAGAGTC AGGTTCAAGCCCAAGCCGCCCGCTCAGAGATATCGCGAACGCTATCCCGAAGCGGCAGCAGTTGGCGGAGCCCAG GACGTGACCATGGTCGACGCCAGCGACGACGAGGGCGACGACGACTGGGTCATTGAGGAATACGTTCGCATTCCG GCCCATTCGGTAGCCTTGGACGTCGCGCCCTCGGACATCGGCGTCCTCGTGCTGGACGACGACGAGGACAGCCTG CTCTTTTTCGGGCCCATGCACGACGAGGAAGATGACGTCGACGAAGACGACGAGGACGAGAACGCCGAGAACCAC TACACGGCAGACTACCCGGAAGACGAGGTGGAGTCGGACGACGAGTACGGCCGGCACGCCTACGGCTACCGCAAC GGGACAGCGTCGGACGACGAGGAGTTCGACGCTGTCTACCACAGCGAGGAGGAGGGGGAGCAGGAGGATGACGGG GCGCTCTTTAGCGGTCAGGGCGAGGGCGACGAAGAGGCCAGGATGGCACGGATCCGGGCCTACATGAAACGCAAC TCGGCTTTCCCATAA |
Gene | >Hirsu2|2388 ATGTCGATCCCTCCACAGCTCATCCGCGTCAAGCGAAAACGCGTTGAGGATGCTCCGGTGACGTTCCTTCGTCTG TCCCCTCGCCTGCAATCACTTCTGTGCGGGAACGATGACTGACGAGGCGCAGAGTTCGATGGAGGCCAGAAACGG CACCGCAGTGGCAGCAACTGGGCCTATCAGCGACGAAATGCCGCATCTCCAGCAGCTCCCGGCGTTGCCCCCCAA AATGACAAGCCCGTAATCCACGTCTCCCGCCCCGCTAAGCCTCCGGCTATTCTCGATACTCTTCATGAGGCGCCC TCGCCTCCCGGCGTCCTTGCCTCTCGTTCGACCACCTCGGGCAGTCGAGACGATGACGTCGACGTGCCGGCGCCC CGCAGATTTCACATCGCGCGCTCCGCAATACCGGCAGGAAAAGATGCGGATGTTCATGCCGGTGCTCCGAAGCAT CATGGGAGCGTGCCCGCTGTGTTCGTCGAGCGAAGCCGAAGAGAGCAGGTGACGAAATCCAGACGTCTCGCGGCC CCGAGGGATACCTCGCAAATGGAAACGCAGATGGCGCCGCCCAGCCAGGTCTCTGAGCACGCGACAGCGGAAACG CCGCTGAAGCGACCAGGCGTGGCGAACAAGGCTCGAGGGCAACAGAAGATTGGCGCTTCTCATGCTCCTCTACCG ACTTCGCTCATGAACCGGCACACGGGAGACATGGACAAGATCGCGGCCGACATGAACCAATGGGTTCTCAACGAG ATGCGAGCCAACTTCGACAGCATGGAGCAGGAGAAGCAGCAGCAGGCTCAGAGAGTCAGGTTCAAGCCCAAGCCG CCCGCTCAGAGATATCGCGAACGCTATCCCGAAGCGGCAGCAGTTGGCGGAGCCCAGGACGTGACCATGGTCGAC GCCAGCGACGACGAGGGCGACGACGACTGGGTCATTGAGGAATACGTTCGCATTCCGGCCCATTCGGTAGCCTTG GACGTCGCGCCCTCGGACATCGGCGTCCTCGTGCTGGACGACGACGAGGACAGCCTGCTCTTTTTCGGGCCCATG CACGACGAGGAAGATGACGTCGACGAAGACGACGAGGACGAGAACGGTACGTCAACGACTCGACACGCAAGGTGC TGCGCGGTGAAAGGGGGGTCGGCGAGCTAACCGGTTGTTGCAGCCGAGAACCACTACACGGCAGACTACCCGGAA GACGAGGTGGAGTCGGACGACGAGTACGGCCGGCACGCCTACGGCTACCGCAACGGGACAGCGTCGGACGACGAG GAGTTCGACGCTGTCTACCACAGCGAGGAGGAGGGGGAGCAGGAGGATGACGGGGCGCTCTTTAGCGGTCAGGGC GAGGGCGACGAAGAGGCCAGGATGGCACGGATCCGGGCCTACATGAAACGCAACTCGGCTTTCCCATAA |