Protein ID | Hirsu2|2379 |
Gene name | |
Location | Contig_1567:3930..5188 |
Strand | + |
Gene length (bp) | 1258 |
Transcript length (bp) | 1206 |
Coding sequence length (bp) | 1206 |
Protein length (aa) | 402 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02184 | HAT | HAT (Half-A-TPR) repeat | 1.4E-05 | 86 | 112 |
PF02184 | HAT | HAT (Half-A-TPR) repeat | 1.3E-11 | 188 | 218 |
PF14559 | TPR_19 | Tetratricopeptide repeat | 1.6E-06 | 83 | 135 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q4WT84|CLF1_ASPFU | Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
sp|Q5BDX1|CLF1_EMENI | Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | 1 | 399 | 0.0E+00 |
sp|Q527H0|CLF1_MAGO7 | Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1 | 1 | 398 | 0.0E+00 |
sp|Q5K654|CLF1_PARBR | Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
sp|Q7SGD2|CLF1_NEUCR | Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q4WT84|CLF1_ASPFU | Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
sp|Q5BDX1|CLF1_EMENI | Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | 1 | 399 | 0.0E+00 |
sp|Q527H0|CLF1_MAGO7 | Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1 | 1 | 398 | 0.0E+00 |
sp|Q5K654|CLF1_PARBR | Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
sp|Q7SGD2|CLF1_NEUCR | Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1 | 1 | 399 | 0.0E+00 |
sp|P87312|CLF1_SCHPO | Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf4 PE=1 SV=1 | 8 | 401 | 7.0E-177 |
sp|P63154|CRNL1_MOUSE | Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1 | 9 | 399 | 1.0E-167 |
sp|P63155|CRNL1_RAT | Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 | 9 | 399 | 1.0E-167 |
sp|Q9BZJ0|CRNL1_HUMAN | Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4 | 9 | 399 | 8.0E-165 |
sp|P17886|CRN_DROME | Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2 | 9 | 399 | 6.0E-159 |
sp|Q6C186|CLF1_YARLI | Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CLF1 PE=3 SV=1 | 9 | 399 | 1.0E-158 |
sp|Q9HF03|CLF1_CRYNH | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CLF1 PE=3 SV=1 | 8 | 398 | 1.0E-156 |
sp|P0CO11|CLF1_CRYNB | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1 | 8 | 398 | 3.0E-156 |
sp|P0CO10|CLF1_CRYNJ | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1 | 8 | 398 | 3.0E-156 |
sp|Q4PB37|CLF1_USTMA | Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CLF1 PE=3 SV=1 | 4 | 399 | 1.0E-155 |
sp|Q54XP4|CRNL1_DICDI | Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1 | 6 | 401 | 3.0E-151 |
sp|Q5AED6|CLF1_CANAL | Pre-mRNA-splicing factor CLF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CLF1 PE=3 SV=2 | 19 | 398 | 1.0E-97 |
sp|Q6BSP7|CLF1_DEBHA | Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CLF1 PE=3 SV=2 | 19 | 399 | 8.0E-97 |
sp|Q6CJK2|CLF1_KLULA | Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CLF1 PE=3 SV=1 | 20 | 399 | 1.0E-89 |
sp|Q12309|CLF1_YEAST | Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1 | 14 | 398 | 7.0E-87 |
sp|Q750X3|CLF1_ASHGO | Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3 SV=1 | 46 | 399 | 2.0E-84 |
sp|Q6FW76|CLF1_CANGA | Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1 PE=3 SV=1 | 19 | 397 | 3.0E-76 |
sp|Q9BZJ0|CRNL1_HUMAN | Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4 | 75 | 400 | 8.0E-21 |
sp|P63155|CRNL1_RAT | Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 | 75 | 400 | 8.0E-19 |
sp|P63154|CRNL1_MOUSE | Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1 | 75 | 400 | 8.0E-19 |
sp|A1A5S1|PRP6_RAT | Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=1 SV=1 | 73 | 352 | 7.0E-17 |
sp|Q91YR7|PRP6_MOUSE | Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=1 SV=1 | 73 | 352 | 1.0E-16 |
sp|O94906|PRP6_HUMAN | Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1 | 73 | 390 | 2.0E-16 |
sp|P17886|CRN_DROME | Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2 | 43 | 400 | 2.0E-16 |
sp|Q2KJJ0|PRP6_BOVIN | Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1 | 73 | 366 | 4.0E-16 |
sp|Q5RCC2|PRP6_PONAB | Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1 | 73 | 390 | 8.0E-16 |
sp|Q5K654|CLF1_PARBR | Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 | 75 | 400 | 2.0E-15 |
sp|Q9HF03|CLF1_CRYNH | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CLF1 PE=3 SV=1 | 55 | 357 | 5.0E-15 |
sp|P0CO10|CLF1_CRYNJ | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1 | 55 | 357 | 5.0E-15 |
sp|P0CO11|CLF1_CRYNB | Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1 | 55 | 357 | 5.0E-15 |
sp|Q5BDX1|CLF1_EMENI | Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | 75 | 400 | 3.0E-14 |
sp|Q527H0|CLF1_MAGO7 | Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1 | 75 | 400 | 5.0E-14 |
sp|P17886|CRN_DROME | Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2 | 75 | 327 | 8.0E-13 |
sp|Q6C186|CLF1_YARLI | Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CLF1 PE=3 SV=1 | 83 | 392 | 1.0E-12 |
sp|Q6C186|CLF1_YARLI | Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CLF1 PE=3 SV=1 | 56 | 365 | 1.0E-11 |
sp|P87312|CLF1_SCHPO | Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf4 PE=1 SV=1 | 72 | 345 | 1.0E-11 |
sp|Q12381|PRP1_SCHPO | Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp1 PE=1 SV=1 | 74 | 390 | 2.0E-11 |
sp|Q8RWG2|CF107_ARATH | Protein high chlorophyll fluorescent 107 OS=Arabidopsis thaliana GN=HCF107 PE=1 SV=1 | 75 | 344 | 3.0E-11 |
sp|P63155|CRNL1_RAT | Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 | 43 | 357 | 3.0E-11 |
sp|P63154|CRNL1_MOUSE | Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1 | 43 | 357 | 3.0E-11 |
sp|P0CO08|SYF1_CRYNJ | Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYF1 PE=3 SV=1 | 86 | 229 | 4.0E-11 |
sp|Q9BZJ0|CRNL1_HUMAN | Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4 | 75 | 338 | 4.0E-11 |
sp|P0CO09|SYF1_CRYNB | Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SYF1 PE=3 SV=1 | 86 | 229 | 4.0E-11 |
sp|P63155|CRNL1_RAT | Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 | 75 | 247 | 6.0E-11 |
sp|P63154|CRNL1_MOUSE | Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1 | 75 | 247 | 6.0E-11 |
sp|Q9P7R9|SYF1_SCHPO | Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf3 PE=1 SV=1 | 90 | 379 | 2.0E-10 |
sp|Q05022|RRP5_YEAST | rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP5 PE=1 SV=1 | 95 | 358 | 4.0E-10 |
sp|P0CO08|SYF1_CRYNJ | Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYF1 PE=3 SV=1 | 90 | 296 | 1.0E-09 |
sp|Q5BDX1|CLF1_EMENI | Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | 72 | 216 | 1.0E-09 |
sp|P0CO09|SYF1_CRYNB | Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SYF1 PE=3 SV=1 | 90 | 296 | 1.0E-09 |
sp|Q52DF3|SYF1_MAGO7 | Pre-mRNA-splicing factor SYF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SYF1 PE=3 SV=2 | 70 | 229 | 2.0E-09 |
sp|Q7SGD2|CLF1_NEUCR | Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1 | 56 | 336 | 2.0E-09 |
sp|Q9FNS4|MBB1_CHLRE | PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 | 83 | 401 | 4.0E-09 |
sp|Q5BDX1|CLF1_EMENI | Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | 55 | 336 | 4.0E-09 |
sp|Q6NS46|RRP5_MOUSE | Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=1 SV=2 | 95 | 364 | 6.0E-09 |
sp|Q14690|RRP5_HUMAN | Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3 | 95 | 364 | 7.0E-09 |
sp|Q527H0|CLF1_MAGO7 | Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1 | 75 | 216 | 8.0E-09 |
sp|Q8RWG2|CF107_ARATH | Protein high chlorophyll fluorescent 107 OS=Arabidopsis thaliana GN=HCF107 PE=1 SV=1 | 61 | 228 | 9.0E-09 |
sp|Q14690|RRP5_HUMAN | Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3 | 22 | 234 | 2.0E-08 |
sp|Q4WT84|CLF1_ASPFU | Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1 | 72 | 216 | 3.0E-08 |
sp|Q54XP4|CRNL1_DICDI | Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1 | 75 | 278 | 3.0E-08 |
sp|Q5K654|CLF1_PARBR | Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 | 72 | 216 | 3.0E-08 |
sp|Q5BH69|SYF1_EMENI | Pre-mRNA-splicing factor syf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf1 PE=3 SV=1 | 70 | 229 | 5.0E-08 |
sp|Q7SAK5|SYF1_NEUCR | Pre-mRNA-splicing factor syf1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-41 PE=3 SV=1 | 70 | 229 | 5.0E-08 |
sp|Q9FNS4|MBB1_CHLRE | PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 | 68 | 366 | 7.0E-08 |
sp|Q6CJK2|CLF1_KLULA | Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CLF1 PE=3 SV=1 | 78 | 394 | 8.0E-08 |
sp|Q4PB37|CLF1_USTMA | Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CLF1 PE=3 SV=1 | 74 | 399 | 8.0E-08 |
sp|Q6NS46|RRP5_MOUSE | Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=1 SV=2 | 22 | 234 | 9.0E-08 |
sp|Q2KJJ0|PRP6_BOVIN | Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1 | 89 | 396 | 2.0E-07 |
sp|A7MB10|RRP5_BOVIN | Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1 | 22 | 234 | 2.0E-07 |
sp|Q4WVF4|SYF1_ASPFU | Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3 SV=1 | 70 | 229 | 3.0E-07 |
sp|Q54Z08|SYF1_DICDI | Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2 PE=3 SV=1 | 75 | 380 | 4.0E-07 |
sp|Q5RDW9|CSTF3_PONAB | Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2 SV=1 | 48 | 394 | 5.0E-07 |
sp|Q4P7S1|SYF1_USTMA | Pre-mRNA-splicing factor SYF1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYF1 PE=3 SV=1 | 91 | 361 | 6.0E-07 |
sp|Q9ZT71|STA1_ARATH | Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1 | 91 | 284 | 6.0E-07 |
sp|Q12309|CLF1_YEAST | Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1 | 42 | 343 | 7.0E-07 |
sp|Q750X3|CLF1_ASHGO | Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3 SV=1 | 44 | 394 | 7.0E-07 |
sp|Q9P7R9|SYF1_SCHPO | Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf3 PE=1 SV=1 | 88 | 353 | 7.0E-07 |
sp|Q99LI7|CSTF3_MOUSE | Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1 | 48 | 394 | 8.0E-07 |
sp|Q12996|CSTF3_HUMAN | Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1 SV=1 | 48 | 394 | 8.0E-07 |
sp|Q9ZT71|STA1_ARATH | Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1 | 44 | 233 | 1.0E-06 |
sp|Q9FNS4|MBB1_CHLRE | PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 | 78 | 228 | 2.0E-06 |
sp|Q9HCS7|SYF1_HUMAN | Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2 | 67 | 306 | 2.0E-06 |
sp|Q9HCS7|SYF1_HUMAN | Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2 | 65 | 205 | 2.0E-06 |
sp|Q9DCD2|SYF1_MOUSE | Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=1 SV=1 | 65 | 205 | 2.0E-06 |
sp|Q99PK0|SYF1_RAT | Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1 | 65 | 205 | 2.0E-06 |
sp|Q5RCC2|PRP6_PONAB | Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1 | 89 | 396 | 3.0E-06 |
sp|Q9DCD2|SYF1_MOUSE | Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=1 SV=1 | 90 | 229 | 3.0E-06 |
sp|Q9DCD2|SYF1_MOUSE | Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=1 SV=1 | 67 | 306 | 3.0E-06 |
sp|Q99PK0|SYF1_RAT | Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1 | 90 | 229 | 3.0E-06 |
sp|Q9ZT71|STA1_ARATH | Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1 | 71 | 389 | 4.0E-06 |
sp|Q99PK0|SYF1_RAT | Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1 | 67 | 306 | 4.0E-06 |
sp|F4J8K6|RRP5_ARATH | rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana GN=RRP5 PE=2 SV=2 | 157 | 353 | 4.0E-06 |
sp|A7MB10|RRP5_BOVIN | Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1 | 111 | 275 | 5.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006396 | RNA processing | Yes |
GO:0071704 | organic substance metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0009987 | cellular process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0008150 | biological_process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.3372 | 0.5684 | 0.0125 | 0.1635 | 0.0596 | 0.0022 | 0.1037 | 0.2997 | 0.3641 | 0.0055 |
Orthofinder run ID | 4 |
Orthogroup | 519 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2379 MESSRGPPRVKNKAAAPVQISAEQLLREAVDRQEVSLQAPTQRFSDLEELHEYQGRKRKEFEDYVRRNRVSLHNW TQYAQWELEQKEFLRARSVFERALDVHPHNVQLWVRYIEAEMKSRNINHARNLLDRAVTTLPRVDKLWYKYVYME EMLGNIPGTRQVFDRWMQWQPDEAAWSAYIKLEKRYGEFERARDIFRTFTMVHPEPRNWIKWTKFEEEHGTSDGV REVFGAAVEALGDDLVDERLFIAYARFESKLKEYERARAIYKYALDRLPRSRAMQLHKAYTTFEKQFGDRDGVED VVLSKRRRLYEEQVKDNAKNYDAWFDYAALEESSGDADRVRDVYERAVAQVPPTQEKRHWRRYIYLWIFYAVWEE LEGRDAERTRQIYSLCLSLIPHKKAS* |
Coding | >Hirsu2|2379 ATGGAGTCCTCGAGAGGCCCACCGCGCGTCAAGAACAAGGCCGCCGCGCCGGTTCAGATCAGCGCCGAGCAGCTC CTGCGCGAAGCCGTCGACCGGCAGGAGGTGTCCCTTCAGGCGCCGACGCAGCGGTTCAGCGACCTCGAGGAGCTG CACGAGTATCAGGGCAGGAAGCGCAAGGAGTTCGAGGACTACGTGCGGCGGAACCGGGTCAGCCTCCACAACTGG ACCCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTCTTGCGCGCGCGCTCCGTCTTCGAGCGGGCGCTCGAC GTGCACCCGCACAACGTGCAGCTATGGGTTCGGTACATCGAGGCGGAGATGAAGTCGCGCAACATCAACCACGCG CGCAACCTGCTGGACCGGGCCGTGACGACGCTGCCCCGCGTGGACAAGCTGTGGTACAAGTACGTGTACATGGAG GAGATGCTGGGCAACATCCCGGGCACGAGGCAGGTGTTCGACCGGTGGATGCAGTGGCAGCCGGACGAGGCGGCG TGGAGCGCGTACATCAAGCTGGAGAAGCGGTACGGCGAGTTCGAGAGGGCGCGCGACATCTTCCGGACCTTCACC ATGGTCCACCCGGAGCCGCGCAACTGGATCAAGTGGACCAAGTTCGAGGAGGAGCACGGGACGAGCGACGGGGTG CGCGAGGTGTTCGGGGCCGCGGTCGAGGCGCTCGGCGACGACCTGGTCGACGAACGGCTCTTCATCGCCTACGCG CGGTTCGAGTCGAAGCTCAAGGAGTACGAGCGGGCGCGGGCCATCTACAAGTACGCGCTGGACCGGCTGCCGCGG TCGCGGGCGATGCAGCTGCACAAGGCCTACACGACGTTCGAGAAGCAGTTCGGCGACCGGGACGGCGTCGAGGAC GTGGTGCTGTCGAAGCGGAGGAGGCTGTACGAGGAGCAGGTCAAGGACAACGCCAAGAACTACGACGCCTGGTTC GACTACGCCGCGCTGGAGGAGTCGTCGGGCGACGCGGACCGGGTGCGGGACGTGTACGAGCGGGCGGTGGCGCAG GTGCCGCCGACGCAGGAGAAGCGGCACTGGCGGCGCTACATCTACCTCTGGATCTTCTACGCCGTCTGGGAGGAG CTCGAGGGCCGGGACGCGGAGCGGACGCGGCAGATCTACAGCCTGTGCCTGTCGCTGATACCGCACAAGAAGGCC AGCTGA |
Transcript | >Hirsu2|2379 ATGGAGTCCTCGAGAGGCCCACCGCGCGTCAAGAACAAGGCCGCCGCGCCGGTTCAGATCAGCGCCGAGCAGCTC CTGCGCGAAGCCGTCGACCGGCAGGAGGTGTCCCTTCAGGCGCCGACGCAGCGGTTCAGCGACCTCGAGGAGCTG CACGAGTATCAGGGCAGGAAGCGCAAGGAGTTCGAGGACTACGTGCGGCGGAACCGGGTCAGCCTCCACAACTGG ACCCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTCTTGCGCGCGCGCTCCGTCTTCGAGCGGGCGCTCGAC GTGCACCCGCACAACGTGCAGCTATGGGTTCGGTACATCGAGGCGGAGATGAAGTCGCGCAACATCAACCACGCG CGCAACCTGCTGGACCGGGCCGTGACGACGCTGCCCCGCGTGGACAAGCTGTGGTACAAGTACGTGTACATGGAG GAGATGCTGGGCAACATCCCGGGCACGAGGCAGGTGTTCGACCGGTGGATGCAGTGGCAGCCGGACGAGGCGGCG TGGAGCGCGTACATCAAGCTGGAGAAGCGGTACGGCGAGTTCGAGAGGGCGCGCGACATCTTCCGGACCTTCACC ATGGTCCACCCGGAGCCGCGCAACTGGATCAAGTGGACCAAGTTCGAGGAGGAGCACGGGACGAGCGACGGGGTG CGCGAGGTGTTCGGGGCCGCGGTCGAGGCGCTCGGCGACGACCTGGTCGACGAACGGCTCTTCATCGCCTACGCG CGGTTCGAGTCGAAGCTCAAGGAGTACGAGCGGGCGCGGGCCATCTACAAGTACGCGCTGGACCGGCTGCCGCGG TCGCGGGCGATGCAGCTGCACAAGGCCTACACGACGTTCGAGAAGCAGTTCGGCGACCGGGACGGCGTCGAGGAC GTGGTGCTGTCGAAGCGGAGGAGGCTGTACGAGGAGCAGGTCAAGGACAACGCCAAGAACTACGACGCCTGGTTC GACTACGCCGCGCTGGAGGAGTCGTCGGGCGACGCGGACCGGGTGCGGGACGTGTACGAGCGGGCGGTGGCGCAG GTGCCGCCGACGCAGGAGAAGCGGCACTGGCGGCGCTACATCTACCTCTGGATCTTCTACGCCGTCTGGGAGGAG CTCGAGGGCCGGGACGCGGAGCGGACGCGGCAGATCTACAGCCTGTGCCTGTCGCTGATACCGCACAAGAAGGCC AGCTGA |
Gene | >Hirsu2|2379 ATGGAGTCCTCGAGAGGCCCACCGCGCGTCAAGAACAAGGCCGCCGCGCCGGTTCAGATCAGCGCCGAGCAGCTC CTGCGCGAAGCCGTCGACCGGCAGGAGGTGTCCCTTCAGGCGCCGACGCAGCGGTTCAGCGACCTCGAGGAGCTG CACGAGTATCAGGGCAGGAAGCGCAAGGAGTTCGAGGACTACGTGCGGCGGAACCGGGTCAGCCTCCACAACTGG ACCCAGTACGCGCAATGGGAGCTGGAGCAGAAGGAGTTCTTGCGCGCGCGCTCCGTCTTCGAGCGGGCGCTCGAC GTGCACCCGCACAACGTGCAGCTATGGGTTCGGTACATCGAGGCGGAGATGAAGTCGCGCAACATCAACCACGCG CGCAACCTGCTGGACCGGGCCGTGACGACGCTGCCCCGCGTGGACAAGCTGTGGTACAAGTACGTGTACATGGAG GAGATGCTGGGCAACATCCCGGGCACGAGGCAGGTGTTCGACCGGTGGATGCAGTGGCAGCCGGACGAGGCGGCG TGGAGCGCGTACATCAAGCTGGAGAAGCGGTACGGCGAGTTCGAGAGGGCGCGCGACATCTTCCGGACCTTCACC ATGGTCCACCCGGAGCCGCGCAACTGGATCAAGTGGACCAAGTTCGAGGAGGAGCACGGGACGAGCGACGGGGTG CGCGAGGTGTTCGGGGCCGCGGTCGAGGCGCTCGGCGACGACCTGGTCGACGAACGGCTCTTCATCGCCTACGCG CGGTTCGAGTCGAAGCTCAAGGAGTACGAGCGGGCGCGGGCCATCTACAAGTACGCGCTGGACCGGCTGCCGCGG TCGCGGGCGATGCAGCTGCACAAGGCCTACACGACGTTCGAGAAGCAGTTCGGCGACCGGGACGGCGTCGAGGAC GTGGTGCTGTCGAAGCGGAGGAGGCTGTACGAGGAGCAGGTCAAGGACAACGCCAAGAACTACGACGCCTGGTTC GACTACGCCGCGCTGGAGGAGTCGTCGGGCGACGCGGACCGGGTGCGGGACGTGTACGAGCGGGCGGTGGCGCAG GTGCCGCCGACGCAGGAGAAGCGGCACTGGCGGCGCTACATCTACCTCTGGATCTTCTACGCCGTCTGGGAGGAG CTCGAGGGCCGGGACGCGGAGCGGACGCGGCAGATCTACAGCCTGTGCCTGTCGCTGATACCGCACAAGAAGTTC ACCTTTGCCAAGATCTGGCTGCTCGCGGCCCAGTTCGAGGTGCGGCAGGGCCAGCTGA |