© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2376 |
| Gene name | |
| Location | Contig_1566:4481..4871 |
| Strand | + |
| Gene length (bp) | 390 |
| Transcript length (bp) | 390 |
| Coding sequence length (bp) | 390 |
| Protein length (aa) | 130 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.4793 | 0.7198 | 0.2204 | 0.0888 | 0.0908 | 0.1064 | 0.1539 | 0.1246 | 0.1146 | 0.0202 |
| Orthofinder run ID | 4 |
| Orthogroup | 9049 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|2376 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2376 MGRDVVVVRAWPHQHAAAVSEDGLSLSLPSGSERGSCQCGEERARERERERERETEMDRLGRSRARERGGTARRA RLTRRRAEGWKQPTSCGGWLPWVSGEAERRQQLDEAGVSAASTAAGRTSRRRSQ* |
| Coding | >Hirsu2|2376 ATGGGACGAGATGTCGTCGTCGTGCGAGCTTGGCCGCATCAACACGCCGCCGCCGTATCAGAAGACGGCCTCTCT CTGTCTCTCCCGTCGGGCAGCGAACGAGGGAGCTGCCAGTGCGGAGAGGAGCGAGCTCGGGAGAGAGAGAGGGAG AGAGAGAGAGAGACAGAGATGGACCGTCTCGGACGCAGTCGTGCGAGAGAGCGAGGCGGCACGGCCCGTCGCGCG CGACTTACACGGCGTCGCGCCGAGGGATGGAAGCAGCCGACGAGCTGCGGAGGCTGGCTGCCTTGGGTTTCGGGT GAGGCAGAGAGACGGCAGCAGCTGGACGAAGCGGGCGTCTCGGCGGCTTCGACGGCCGCCGGTCGCACGAGCCGA CGCCGTTCCCAATGA |
| Transcript | >Hirsu2|2376 ATGGGACGAGATGTCGTCGTCGTGCGAGCTTGGCCGCATCAACACGCCGCCGCCGTATCAGAAGACGGCCTCTCT CTGTCTCTCCCGTCGGGCAGCGAACGAGGGAGCTGCCAGTGCGGAGAGGAGCGAGCTCGGGAGAGAGAGAGGGAG AGAGAGAGAGAGACAGAGATGGACCGTCTCGGACGCAGTCGTGCGAGAGAGCGAGGCGGCACGGCCCGTCGCGCG CGACTTACACGGCGTCGCGCCGAGGGATGGAAGCAGCCGACGAGCTGCGGAGGCTGGCTGCCTTGGGTTTCGGGT GAGGCAGAGAGACGGCAGCAGCTGGACGAAGCGGGCGTCTCGGCGGCTTCGACGGCCGCCGGTCGCACGAGCCGA CGCCGTTCCCAATGA |
| Gene | >Hirsu2|2376 ATGGGACGAGATGTCGTCGTCGTGCGAGCTTGGCCGCATCAACACGCCGCCGCCGTATCAGAAGACGGCCTCTCT CTGTCTCTCCCGTCGGGCAGCGAACGAGGGAGCTGCCAGTGCGGAGAGGAGCGAGCTCGGGAGAGAGAGAGGGAG AGAGAGAGAGAGACAGAGATGGACCGTCTCGGACGCAGTCGTGCGAGAGAGCGAGGCGGCACGGCCCGTCGCGCG CGACTTACACGGCGTCGCGCCGAGGGATGGAAGCAGCCGACGAGCTGCGGAGGCTGGCTGCCTTGGGTTTCGGGT GAGGCAGAGAGACGGCAGCAGCTGGACGAAGCGGGCGTCTCGGCGGCTTCGACGGCCGCCGGTCGCACGAGCCGA CGCCGTTCCCAATGA |