© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2374 |
| Gene name | |
| Location | Contig_1566:1454..2595 |
| Strand | - |
| Gene length (bp) | 1141 |
| Transcript length (bp) | 1002 |
| Coding sequence length (bp) | 1002 |
| Protein length (aa) | 334 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13874 | Nup54 | Nucleoporin complex subunit 54 | 1.2E-38 | 126 | 261 |
| PF18570 | Nup54_57_C | NUP57/Nup54 C-terminal domain | 5.9E-16 | 291 | 319 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S0R2|NUP57_CHATD | Nucleoporin NUP57 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NUP57 PE=1 SV=1 | 2 | 327 | 7.0E-112 |
| sp|O42963|NUP44_SCHPO | Nucleoporin nup44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup44 PE=2 SV=1 | 81 | 264 | 2.0E-31 |
| sp|P48837|NUP57_YEAST | Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1 | 86 | 276 | 1.0E-25 |
| sp|Q8BTS4|NUP54_MOUSE | Nuclear pore complex protein Nup54 OS=Mus musculus GN=Nup54 PE=1 SV=1 | 129 | 331 | 2.0E-08 |
| sp|P70582|NUP54_RAT | Nuclear pore complex protein Nup54 OS=Rattus norvegicus GN=Nup54 PE=1 SV=1 | 129 | 331 | 1.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S0R2|NUP57_CHATD | Nucleoporin NUP57 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NUP57 PE=1 SV=1 | 2 | 327 | 7.0E-112 |
| sp|O42963|NUP44_SCHPO | Nucleoporin nup44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup44 PE=2 SV=1 | 81 | 264 | 2.0E-31 |
| sp|P48837|NUP57_YEAST | Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1 | 86 | 276 | 1.0E-25 |
| sp|Q8BTS4|NUP54_MOUSE | Nuclear pore complex protein Nup54 OS=Mus musculus GN=Nup54 PE=1 SV=1 | 129 | 331 | 2.0E-08 |
| sp|P70582|NUP54_RAT | Nuclear pore complex protein Nup54 OS=Rattus norvegicus GN=Nup54 PE=1 SV=1 | 129 | 331 | 1.0E-07 |
| sp|Q7Z3B4|NUP54_HUMAN | Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2 | 129 | 261 | 2.0E-07 |
| sp|Q9V6B9|NUP54_DROME | Probable nucleoporin Nup54 OS=Drosophila melanogaster GN=Nup54 PE=2 SV=1 | 129 | 315 | 4.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.1529 | 0.7703 | 0.0241 | 0.0266 | 0.0278 | 0.0019 | 0.0738 | 0.2072 | 0.0769 | 0.0428 |
| Orthofinder run ID | 4 |
| Orthogroup | 2060 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2374 MSLFGQPKPFGSAGLFSQSQPPQQTQPMQQPSNSFGQTMAAGQQLGNSAMQPPQQVQQMPVLAQSAAQLSSSLWQ PGKETPHQKPILEQIKLVTEKWDPANASCVFKHYFYNKVDEAHIPFYKPQPYEDPREWEEALQKKPAPGFMPVLC SGYGGVADRLKTQKRAVSEFNTRLHQINGSLDAILQRHELETEVRALAARRRQTAISERCLALAARVQVLRNRGY ALSGDEDDLKNRLQSLEREIQDPALGAREEELWSRLIVLRGYSDRLNKERDQPAGPESEGLDPETEAKAKRVMED YEKQLQHLKKELEALGADFDEWDKSHSIHSRSR* |
| Coding | >Hirsu2|2374 ATGTCGCTCTTCGGTCAGCCCAAGCCCTTCGGCTCGGCCGGCCTGTTTTCGCAGTCGCAACCCCCCCAGCAGACG CAGCCGATGCAGCAGCCGAGCAACAGCTTCGGCCAGACGATGGCGGCCGGCCAGCAGCTCGGCAACTCGGCGATG CAGCCACCGCAGCAGGTCCAGCAGATGCCCGTGCTGGCCCAGTCGGCCGCCCAGCTGTCTAGCTCGCTGTGGCAG CCCGGCAAGGAGACGCCACACCAGAAGCCGATCCTGGAGCAGATCAAGCTCGTGACGGAGAAGTGGGACCCGGCC AACGCCAGCTGCGTCTTCAAGCACTACTTCTACAACAAGGTCGACGAGGCGCACATCCCCTTCTACAAGCCGCAG CCGTACGAGGACCCGCGCGAGTGGGAGGAGGCGCTGCAGAAGAAGCCGGCGCCGGGCTTCATGCCCGTCCTCTGC TCCGGCTACGGCGGCGTCGCCGACCGCCTCAAGACGCAGAAGCGCGCCGTGTCCGAGTTCAACACGCGCCTGCAC CAGATCAACGGCAGCCTCGACGCCATCCTGCAGCGCCACGAGCTCGAGACCGAGGTGCGCGCCCTGGCGGCCCGC AGGCGGCAGACGGCCATCAGCGAGCGCTGCCTCGCCCTGGCGGCCCGTGTCCAGGTCCTGCGCAACCGGGGCTAC GCCCTCAGCGGCGACGAGGACGACCTCAAGAACAGGCTGCAGAGCCTTGAGAGGGAGATTCAGGACCCGGCCCTC GGCGCCCGCGAGGAGGAGCTATGGAGCCGCCTTATCGTTCTTCGGGGCTACTCCGACCGGCTGAACAAGGAGAGG GACCAGCCCGCCGGCCCCGAGAGCGAGGGGCTGGACCCGGAAACAGAGGCCAAGGCCAAGAGGGTCATGGAGGAC TACGAGAAGCAACTGCAGCATCTGAAGAAGGAACTGGAAGCGCTGGGCGCTGACTTTGACGAATGGGACAAGAGC CACAGCATACACTCCAGATCCAGGTGA |
| Transcript | >Hirsu2|2374 ATGTCGCTCTTCGGTCAGCCCAAGCCCTTCGGCTCGGCCGGCCTGTTTTCGCAGTCGCAACCCCCCCAGCAGACG CAGCCGATGCAGCAGCCGAGCAACAGCTTCGGCCAGACGATGGCGGCCGGCCAGCAGCTCGGCAACTCGGCGATG CAGCCACCGCAGCAGGTCCAGCAGATGCCCGTGCTGGCCCAGTCGGCCGCCCAGCTGTCTAGCTCGCTGTGGCAG CCCGGCAAGGAGACGCCACACCAGAAGCCGATCCTGGAGCAGATCAAGCTCGTGACGGAGAAGTGGGACCCGGCC AACGCCAGCTGCGTCTTCAAGCACTACTTCTACAACAAGGTCGACGAGGCGCACATCCCCTTCTACAAGCCGCAG CCGTACGAGGACCCGCGCGAGTGGGAGGAGGCGCTGCAGAAGAAGCCGGCGCCGGGCTTCATGCCCGTCCTCTGC TCCGGCTACGGCGGCGTCGCCGACCGCCTCAAGACGCAGAAGCGCGCCGTGTCCGAGTTCAACACGCGCCTGCAC CAGATCAACGGCAGCCTCGACGCCATCCTGCAGCGCCACGAGCTCGAGACCGAGGTGCGCGCCCTGGCGGCCCGC AGGCGGCAGACGGCCATCAGCGAGCGCTGCCTCGCCCTGGCGGCCCGTGTCCAGGTCCTGCGCAACCGGGGCTAC GCCCTCAGCGGCGACGAGGACGACCTCAAGAACAGGCTGCAGAGCCTTGAGAGGGAGATTCAGGACCCGGCCCTC GGCGCCCGCGAGGAGGAGCTATGGAGCCGCCTTATCGTTCTTCGGGGCTACTCCGACCGGCTGAACAAGGAGAGG GACCAGCCCGCCGGCCCCGAGAGCGAGGGGCTGGACCCGGAAACAGAGGCCAAGGCCAAGAGGGTCATGGAGGAC TACGAGAAGCAACTGCAGCATCTGAAGAAGGAACTGGAAGCGCTGGGCGCTGACTTTGACGAATGGGACAAGAGC CACAGCATACACTCCAGATCCAGGTGA |
| Gene | >Hirsu2|2374 ATGTCGCTCTTCGGTCAGCCCAAGCCCTTCGGCTCGGCCGGCCTGTTTTCGCAGTCGCAACCCCCCCAGCAGACG CAGCCGATGCAGCAGCCGAGCAACAGCTTCGGCCAGACGATGGCGGCCGGCCAGCAGCTCGGCAACTCGGCGATG CAGCCACCGCAGCAGGTCCAGCAGATGCCCGTGCTGGCCCAGTCGGCCGCCCAGCTGTCTAGCTCGCTGTGGCAG CCCGGCAAGGAGACGCCACGCAAGTTCCCATCCTTCCCTCCGTTGCTCGTCGTGCTCTCGTCGGCTGACGTGACG GAGCAGACCAGAAGCCGATCCTGGAGCAGATCAAGCTCGTGACGGAGAAGTGGGACCCGGCCAACGCCAGCTGCG TCTTCAAGCACTACTTCTACAACAAGGTCGACGAGGCGCACATCCCCTTCTACAAGCCGCAGCCGTACGAGGACC CGCGCGAGTGGGAGGAGGCGCTGCAGAAGAAGCCGGCGCCGGGCTTCATGCCCGTCCTCTGCTCCGGCTACGGCG GCGTCGCCGACCGCCTCAAGACGCAGAAGCGCGCCGTGTCCGAGTTCAACACGCGCCTGCACCAGATCAACGGCA GCCTCGACGCCATCCTGCAGCGCCACGAGCTCGAGACCGAGGTGCGCGCCCTGGCGGCCCGCAGGCGGCAGACGG CCATCAGCGAGCGCTGCCTCGCCCTGGCGGCCCGTGTCCAGGTCCTGCGCAACCGGGGCTACGCCCTCAGCGGCG ACGAGGACGACCTCAAGAACAGGCTGCAGAGCCTTGAGAGGGAGATTCAGGACCCGGCCCTCGGCGCCCGCGAGG AGGAGCTATGGAGCCGCCTTATCGTTCTTCGGGGCTACTCCGACCGGCTGAACAAGGAGAGGGACCAGCCCGCCG GCCCCGAGAGCGAGGGGCTGGACCCGGAAACAGAGGCCAAGGCCAAGAGGGTATAGATGGCCNNNNCCCCCCCCC CCCCTCTCTCACTCCCCATCGCTCCAGCATCGCGGCTAAGCATCGAGAACAGGTCATGGAGGACTACGAGAAGCA ACTGCAGCATCTGAAGAAGGAACTGGAAGCGCTGGGCGCTGACTTTGACGAATGGGACAAGAGCCACAGCATACA CTCCAGATCCAGGTGA |