© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2369 |
| Gene name | |
| Location | Contig_1562:4304..5409 |
| Strand | + |
| Gene length (bp) | 1105 |
| Transcript length (bp) | 1044 |
| Coding sequence length (bp) | 1044 |
| Protein length (aa) | 348 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.2E-14 | 1 | 260 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 45 | 67 | 22 |
| 3 | 117 | 139 | 22 |
| 4 | 154 | 176 | 22 |
| 5 | 197 | 219 | 22 |
| 6 | 254 | 276 | 22 |
| 7 | 283 | 305 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2369 MYSAVADVTADEDRASAFLTLSFGGLVGEFIGPAISSGLMQATSPWLPYLLSFVFLFLAVGMLICLPETLPPTRK EVEEVEPAEDKASHAVKWQLREYASQLKESLEMLKQPGLAKVLVTFLAPVPVLIAMSQVLVQYVSKRFGWSLASA GFLLSVRGTINMLLLLLILPGLSRALLSRAAAKGQHAAAKDRALAQLSAVVLTLGCLVIASGSIAVVVAGLMVST LGSGLAPICRSLAAHLVSSDNTAKLQTLIGIIEAVSSLVAGPALAGLLAAGMSRGGAWTGLPFLGLAAFLCLATL PLFFLAVPGTGQAPAPAPAGPCVRGEGGCRSLGAQCPAHADRGGSTV* |
| Coding | >Hirsu2|2369 ATGTATTCCGCCGTGGCCGACGTGACGGCCGACGAGGACAGGGCATCGGCCTTCCTCACTCTCTCGTTCGGTGGT CTGGTGGGCGAATTCATCGGGCCTGCCATCTCTTCGGGCCTCATGCAAGCTACTTCGCCATGGCTCCCGTATCTG CTGAGCTTCGTCTTCCTCTTCCTCGCCGTCGGCATGCTGATCTGCCTCCCTGAGACGCTGCCGCCGACGAGGAAG GAGGTGGAAGAGGTCGAGCCGGCCGAGGACAAGGCGAGCCATGCCGTCAAGTGGCAGCTCCGGGAATACGCGTCC CAGCTCAAGGAGTCGCTGGAGATGCTGAAGCAGCCCGGCCTGGCCAAGGTCCTCGTCACCTTCCTTGCCCCCGTG CCGGTGCTCATAGCGATGAGCCAGGTGTTGGTGCAGTACGTCAGCAAGCGGTTCGGCTGGTCGCTCGCCTCGGCC GGCTTCCTGCTGTCGGTCCGCGGGACGATCAACATGCTGCTGCTGCTCCTCATTCTGCCGGGCCTCTCGCGCGCG CTGCTGTCGCGCGCCGCTGCCAAGGGCCAGCACGCGGCCGCCAAGGACCGCGCCCTCGCCCAGCTCTCGGCCGTC GTCCTGACGCTGGGCTGCCTCGTCATAGCCAGCGGCAGCATCGCCGTCGTCGTCGCCGGCCTGATGGTCAGCACG CTCGGCTCCGGGCTGGCGCCCATCTGCCGCTCCCTGGCCGCCCACCTCGTCAGCAGCGACAACACGGCCAAGCTG CAGACGCTCATCGGCATCATCGAGGCCGTGAGCTCGCTCGTGGCCGGCCCCGCCCTCGCCGGCTTGCTCGCCGCC GGCATGAGCCGCGGCGGCGCCTGGACGGGGCTGCCCTTCCTCGGCCTGGCCGCCTTTCTCTGCCTCGCCACCCTG CCGCTGTTCTTCCTGGCCGTCCCCGGAACGGGCCAGGCGCCGGCGCCGGCCCCCGCCGGCCCCTGTGTGCGCGGC GAAGGCGGCTGCCGCTCCCTCGGTGCGCAGTGCCCGGCGCACGCCGACCGAGGGGGCTCGACCGTTTGA |
| Transcript | >Hirsu2|2369 ATGTATTCCGCCGTGGCCGACGTGACGGCCGACGAGGACAGGGCATCGGCCTTCCTCACTCTCTCGTTCGGTGGT CTGGTGGGCGAATTCATCGGGCCTGCCATCTCTTCGGGCCTCATGCAAGCTACTTCGCCATGGCTCCCGTATCTG CTGAGCTTCGTCTTCCTCTTCCTCGCCGTCGGCATGCTGATCTGCCTCCCTGAGACGCTGCCGCCGACGAGGAAG GAGGTGGAAGAGGTCGAGCCGGCCGAGGACAAGGCGAGCCATGCCGTCAAGTGGCAGCTCCGGGAATACGCGTCC CAGCTCAAGGAGTCGCTGGAGATGCTGAAGCAGCCCGGCCTGGCCAAGGTCCTCGTCACCTTCCTTGCCCCCGTG CCGGTGCTCATAGCGATGAGCCAGGTGTTGGTGCAGTACGTCAGCAAGCGGTTCGGCTGGTCGCTCGCCTCGGCC GGCTTCCTGCTGTCGGTCCGCGGGACGATCAACATGCTGCTGCTGCTCCTCATTCTGCCGGGCCTCTCGCGCGCG CTGCTGTCGCGCGCCGCTGCCAAGGGCCAGCACGCGGCCGCCAAGGACCGCGCCCTCGCCCAGCTCTCGGCCGTC GTCCTGACGCTGGGCTGCCTCGTCATAGCCAGCGGCAGCATCGCCGTCGTCGTCGCCGGCCTGATGGTCAGCACG CTCGGCTCCGGGCTGGCGCCCATCTGCCGCTCCCTGGCCGCCCACCTCGTCAGCAGCGACAACACGGCCAAGCTG CAGACGCTCATCGGCATCATCGAGGCCGTGAGCTCGCTCGTGGCCGGCCCCGCCCTCGCCGGCTTGCTCGCCGCC GGCATGAGCCGCGGCGGCGCCTGGACGGGGCTGCCCTTCCTCGGCCTGGCCGCCTTTCTCTGCCTCGCCACCCTG CCGCTGTTCTTCCTGGCCGTCCCCGGAACGGGCCAGGCGCCGGCGCCGGCCCCCGCCGGCCCCTGTGTGCGCGGC GAAGGCGGCTGCCGCTCCCTCGGTGCGCAGTGCCCGGCGCACGCCGACCGAGGGGGCTCGACCGTTTGA |
| Gene | >Hirsu2|2369 ATGTATTCCGCCGTGGCCGACGTGACGGCCGACGAGGACAGGTTCGTCAGCGATTGCTCCCCCCGTTGTCGAGCC CGCAGACTAAGCCGACGACTCGTCCAGGGCATCGGCCTTCCTCACTCTCTCGTTCGGTGGTCTGGTGGGCGAATT CATCGGGCCTGCCATCTCTTCGGGCCTCATGCAAGCTACTTCGCCATGGCTCCCGTATCTGCTGAGCTTCGTCTT CCTCTTCCTCGCCGTCGGCATGCTGATCTGCCTCCCTGAGACGCTGCCGCCGACGAGGAAGGAGGTGGAAGAGGT CGAGCCGGCCGAGGACAAGGCGAGCCATGCCGTCAAGTGGCAGCTCCGGGAATACGCGTCCCAGCTCAAGGAGTC GCTGGAGATGCTGAAGCAGCCCGGCCTGGCCAAGGTCCTCGTCACCTTCCTTGCCCCCGTGCCGGTGCTCATAGC GATGAGCCAGGTGTTGGTGCAGTACGTCAGCAAGCGGTTCGGCTGGTCGCTCGCCTCGGCCGGCTTCCTGCTGTC GGTCCGCGGGACGATCAACATGCTGCTGCTGCTCCTCATTCTGCCGGGCCTCTCGCGCGCGCTGCTGTCGCGCGC CGCTGCCAAGGGCCAGCACGCGGCCGCCAAGGACCGCGCCCTCGCCCAGCTCTCGGCCGTCGTCCTGACGCTGGG CTGCCTCGTCATAGCCAGCGGCAGCATCGCCGTCGTCGTCGCCGGCCTGATGGTCAGCACGCTCGGCTCCGGGCT GGCGCCCATCTGCCGCTCCCTGGCCGCCCACCTCGTCAGCAGCGACAACACGGCCAAGCTGCAGACGCTCATCGG CATCATCGAGGCCGTGAGCTCGCTCGTGGCCGGCCCCGCCCTCGCCGGCTTGCTCGCCGCCGGCATGAGCCGCGG CGGCGCCTGGACGGGGCTGCCCTTCCTCGGCCTGGCCGCCTTTCTCTGCCTCGCCACCCTGCCGCTGTTCTTCCT GGCCGTCCCCGGAACGGGCCAGGCGCCGGCGCCGGCCCCCGCCGGCCCCTGTGTGCGCGGCGAAGGCGGCTGCCG CTCCCTCGGTGCGCAGTGCCCGGCGCACGCCGACCGAGGGGGCTCGACCGTTTGA |