Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2368
Gene name
LocationContig_1562:1083..2107
Strand-
Gene length (bp)1024
Transcript length (bp)882
Coding sequence length (bp)882
Protein length (aa) 294

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01138 RNase_PH 3' exoribonuclease family, domain 1 4.2E-22 32 164
PF03725 RNase_PH_C 3' exoribonuclease family, domain 2 3.2E-10 190 258

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1 1 293 2.0E-102
sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1 1 293 2.0E-85
sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=1 SV=1 3 282 3.0E-67
sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=1 SV=1 3 282 3.0E-67
sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3 3 282 2.0E-66
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Swissprot ID Swissprot Description Start End E-value
sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1 1 293 2.0E-102
sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1 1 293 2.0E-85
sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=1 SV=1 3 282 3.0E-67
sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=1 SV=1 3 282 3.0E-67
sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3 3 282 2.0E-66
sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1 3 282 4.0E-66
sp|Q9LDM2|CER7L_ARATH Exosome complex component RRP45A OS=Arabidopsis thaliana GN=RRP45A PE=2 SV=1 8 278 9.0E-63
sp|Q9M209|CER7_ARATH Exosome complex component RRP45B OS=Arabidopsis thaliana GN=RRP45B PE=2 SV=1 8 267 1.0E-60
sp|Q8U0M0|RRP42_PYRFU Exosome complex component Rrp42 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rrp42 PE=3 SV=1 12 271 9.0E-41
sp|C5A2B8|RRP42_THEGJ Exosome complex component Rrp42 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rrp42 PE=3 SV=1 19 267 3.0E-40
sp|O59224|RRP42_PYRHO Exosome complex component Rrp42 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rrp42 PE=3 SV=1 19 276 4.0E-39
sp|Q8TYC2|RRP42_METKA Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1 15 263 7.0E-39
sp|B6YSE7|RRP42_THEON Exosome complex component Rrp42 OS=Thermococcus onnurineus (strain NA1) GN=rrp42 PE=3 SV=1 19 263 1.0E-36
sp|Q0W2Y7|RRP42_METAR Exosome complex component Rrp42 OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=rrp42 PE=3 SV=1 11 240 1.0E-36
sp|Q9V118|RRP42_PYRAB Exosome complex component Rrp42 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rrp42 PE=1 SV=1 19 267 2.0E-36
sp|Q5JIR7|RRP42_THEKO Exosome complex component Rrp42 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rrp42 PE=3 SV=1 12 263 3.0E-36
sp|Q8TGX5|RRP42_METAC Exosome complex component Rrp42 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rrp42 PE=3 SV=1 11 273 2.0E-34
sp|Q8PTT7|RRP42_METMA Exosome complex component Rrp42 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rrp42 PE=3 SV=1 11 273 1.0E-33
sp|Q9HIP1|RRP42_THEAC Exosome complex component Rrp42 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rrp42 PE=3 SV=2 1 238 9.0E-33
sp|Q975G9|RRP42_SULTO Exosome complex component Rrp42 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rrp42 PE=3 SV=1 8 238 6.0E-32
sp|Q97BZ4|RRP42_THEVO Exosome complex component Rrp42 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rrp42 PE=3 SV=1 1 238 7.0E-32
sp|O26778|RRP42_METTH Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rrp42 PE=1 SV=1 7 271 3.0E-31
sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1 14 271 8.0E-30
sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1 14 271 2.0E-29
sp|Q9YC05|RRP42_AERPE Exosome complex component Rrp42 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rrp42 PE=3 SV=1 7 173 7.0E-28
sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1 14 271 7.0E-28
sp|Q8ZVN0|RRP42_PYRAE Exosome complex component Rrp42 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rrp42 PE=3 SV=1 15 240 2.0E-25
sp|Q9UXC0|RRP42_SULSO Exosome complex component Rrp42 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rrp42 PE=1 SV=1 7 256 4.0E-25
sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1 9 256 5.0E-25
sp|C3NHC2|RRP42_SULIN Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rrp42 PE=3 SV=1 7 278 3.0E-24
sp|C3MVG5|RRP42_SULIM Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rrp42 PE=3 SV=1 7 278 4.0E-24
sp|C3N5R4|RRP42_SULIA Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain M.16.27) GN=rrp42 PE=3 SV=1 7 278 4.0E-24
sp|O29756|RRP42_ARCFU Exosome complex component Rrp42 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rrp42 PE=1 SV=1 11 263 6.0E-24
sp|C3NED0|RRP42_SULIY Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rrp42 PE=3 SV=1 7 278 7.0E-24
sp|C3MQ47|RRP42_SULIL Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rrp42 PE=3 SV=1 7 278 7.0E-24
sp|C4KHE3|RRP42_SULIK Exosome complex component Rrp42 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rrp42 PE=3 SV=1 7 278 7.0E-24
sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3 8 285 3.0E-18
sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2 8 285 7.0E-18
sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7 PE=3 SV=1 10 273 9.0E-15
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal|Nuclear export signal 0.7545 0.7342 0.1141 0.0847 0.0704 0.0077 0.0756 0.1937 0.3299 0.0284

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2055
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3738
Ophiocordyceps australis map64 (Brazil) OphauB2|6548
Ophiocordyceps camponoti-floridani Ophcf2|01941
Ophiocordyceps camponoti-rufipedis Ophun1|6272
Ophiocordyceps kimflemingae Ophio5|5918
Ophiocordyceps subramaniannii Hirsu2|2368 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2368
MPREAEPSLSEKTFVSKALEEGLRVDNRKFDQFRPLQLTFGDGYGVADVRCGKTRVVAKVSADVTVPFSDRPSDG
VFTITSELGPMVAPSFEANRPTETEVLLSRLLEKTIRRSGALDTESLCLMAGQKCWAVRADVHVLAHDGNLLDTA
CLAVVAALRHFRRPETSVQGETLTVYTPAEREPVPLSWLHSPFCVTFSFFGDGGDTVLLDTTWLEEQLRVSSCTF
SLNKHGEICQVSKLGGADIDAPIFVQCAQTALDRAKEFTALVDRTLAEDGKKRDRGGLMAELRAENER*
Coding >Hirsu2|2368
ATGCCTCGCGAAGCCGAGCCCTCGCTCTCGGAAAAGACGTTCGTGTCGAAAGCCCTGGAAGAAGGGTTGCGTGTG
GACAATCGCAAGTTCGACCAATTCAGACCGCTGCAGCTGACGTTTGGCGATGGCTATGGCGTGGCCGACGTCCGG
TGCGGCAAGACGAGAGTGGTTGCCAAGGTCTCGGCGGACGTGACGGTCCCCTTCAGCGACCGGCCGTCGGACGGC
GTCTTCACCATCACGTCGGAGCTCGGCCCGATGGTGGCGCCGTCGTTCGAGGCCAACCGGCCGACCGAGACGGAG
GTGCTGCTGTCGCGCCTGCTGGAAAAGACGATCCGGCGCTCGGGCGCGCTCGACACCGAGTCGCTCTGCCTGATG
GCCGGGCAGAAGTGCTGGGCCGTCCGGGCCGACGTCCACGTCCTCGCGCACGACGGCAACCTGCTCGACACGGCC
TGCCTGGCCGTCGTCGCCGCGCTGCGCCACTTCCGCCGGCCCGAGACGAGCGTGCAGGGCGAGACGTTGACCGTC
TACACGCCGGCCGAGCGGGAGCCCGTGCCGCTCAGCTGGCTGCACTCGCCCTTTTGCGTCACCTTCAGCTTCTTC
GGCGACGGCGGCGACACCGTCCTGCTCGACACCACTTGGCTCGAGGAGCAGCTGCGGGTGAGCAGCTGCACCTTC
AGCCTCAACAAACACGGCGAGATATGCCAGGTGTCGAAGCTGGGCGGCGCCGACATCGACGCGCCCATCTTCGTG
CAGTGCGCCCAGACGGCACTCGACAGGGCCAAGGAGTTCACGGCCCTGGTGGACCGGACCTTGGCCGAGGATGGG
AAGAAGAGAGACAGGGGCGGGCTGATGGCAGAGCTGAGGGCGGAAAACGAGAGGTAG
Transcript >Hirsu2|2368
ATGCCTCGCGAAGCCGAGCCCTCGCTCTCGGAAAAGACGTTCGTGTCGAAAGCCCTGGAAGAAGGGTTGCGTGTG
GACAATCGCAAGTTCGACCAATTCAGACCGCTGCAGCTGACGTTTGGCGATGGCTATGGCGTGGCCGACGTCCGG
TGCGGCAAGACGAGAGTGGTTGCCAAGGTCTCGGCGGACGTGACGGTCCCCTTCAGCGACCGGCCGTCGGACGGC
GTCTTCACCATCACGTCGGAGCTCGGCCCGATGGTGGCGCCGTCGTTCGAGGCCAACCGGCCGACCGAGACGGAG
GTGCTGCTGTCGCGCCTGCTGGAAAAGACGATCCGGCGCTCGGGCGCGCTCGACACCGAGTCGCTCTGCCTGATG
GCCGGGCAGAAGTGCTGGGCCGTCCGGGCCGACGTCCACGTCCTCGCGCACGACGGCAACCTGCTCGACACGGCC
TGCCTGGCCGTCGTCGCCGCGCTGCGCCACTTCCGCCGGCCCGAGACGAGCGTGCAGGGCGAGACGTTGACCGTC
TACACGCCGGCCGAGCGGGAGCCCGTGCCGCTCAGCTGGCTGCACTCGCCCTTTTGCGTCACCTTCAGCTTCTTC
GGCGACGGCGGCGACACCGTCCTGCTCGACACCACTTGGCTCGAGGAGCAGCTGCGGGTGAGCAGCTGCACCTTC
AGCCTCAACAAACACGGCGAGATATGCCAGGTGTCGAAGCTGGGCGGCGCCGACATCGACGCGCCCATCTTCGTG
CAGTGCGCCCAGACGGCACTCGACAGGGCCAAGGAGTTCACGGCCCTGGTGGACCGGACCTTGGCCGAGGATGGG
AAGAAGAGAGACAGGGGCGGGCTGATGGCAGAGCTGAGGGCGGAAAACGAGAGGTAG
Gene >Hirsu2|2368
ATGCCTCGCGAAGCCGAGCCCTCGCTCTCGGAAAAGACGTTCGTGTCGAAAGCCCTGGAAGAAGGGTTGCGTGTG
GACAATCGCAAGTTCGACCAATTCAGACCGCTGCAGCTGACGTTTGGCGATGGCTATGGCGTGGCCGACGTCCGG
TGCGGCAAGACGAGGTATGACGCAGCCTGTTCACTGTCCCTTCGAATTATTATTCCCATGAGGAATGGCCGGCGA
GAGATCGATATCGGGTGGAGGGGCGTGGGATTGTTGTCGTTGCTAATTGGGCCCTTTGTGTGCAATCTCGGTCTC
CAACAGAGTGGTTGCCAAGGTCTCGGCGGACGTGACGGTCCCCTTCAGCGACCGGCCGTCGGACGGCGTCTTCAC
CATCACGTCGGAGCTCGGCCCGATGGTGGCGCCGTCGTTCGAGGCCAACCGGCCGACCGAGACGGAGGTGCTGCT
GTCGCGCCTGCTGGAAAAGACGATCCGGCGCTCGGGCGCGCTCGACACCGAGTCGCTCTGCCTGATGGCCGGGCA
GAAGTGCTGGGCCGTCCGGGCCGACGTCCACGTCCTCGCGCACGACGGCAACCTGCTCGACACGGCCTGCCTGGC
CGTCGTCGCCGCGCTGCGCCACTTCCGCCGGCCCGAGACGAGCGTGCAGGGCGAGACGTTGACCGTCTACACGCC
GGCCGAGCGGGAGCCCGTGCCGCTCAGCTGGCTGCACTCGCCCTTTTGCGTCACCTTCAGCTTCTTCGGCGACGG
CGGCGACACCGTCCTGCTCGACACCACTTGGCTCGAGGAGCAGCTGCGGGTGAGCAGCTGCACCTTCAGCCTCAA
CAAACACGGCGAGATATGCCAGGTGTCGAAGCTGGGCGGCGCCGACATCGACGCGCCCATCTTCGTGCAGTGCGC
CCAGACGGCACTCGACAGGGCCAAGGAGTTCACGGCCCTGGTGGACCGGACCTTGGCCGAGGATGGGAAGAAGAG
AGACAGGGGCGGGCTGATGGCAGAGCTGAGGGCGGAAAACGAGAGGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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