© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2366 |
| Gene name | |
| Location | Contig_1561:3553..5722 |
| Strand | + |
| Gene length (bp) | 2169 |
| Transcript length (bp) | 1419 |
| Coding sequence length (bp) | 1419 |
| Protein length (aa) | 473 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11704 | Folliculin | Vesicle coat protein involved in Golgi to plasma membrane transport | 2.7E-58 | 244 | 465 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005096 | GTPase activator activity | Yes |
| GO:0008047 | enzyme activator activity | No |
| GO:0060589 | nucleoside-triphosphatase regulator activity | No |
| GO:0030695 | GTPase regulator activity | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0030234 | enzyme regulator activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6549 | 0.27 | 0.1603 | 0.1341 | 0.1718 | 0.0069 | 0.1309 | 0.3158 | 0.2529 | 0.0036 |
| Orthofinder run ID | 4 |
| Orthogroup | 2053 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2366 MTYILCLAHYCDTHGPTPLMVTEGLRNPCSVCFDEPSPSSDVCSTSAGDGRPRPGAPTSAPRSHSTTASLNDALR ELHIARSASVPASEQDAQAKRAALRHSAAAAVPPPEHTLDGPRPMFQHPRRDSSFRRTYDETVTKKQGPCDNCAM TLPRRQASASSNDSVADSPTPTLRTRTPIERVFATTEQASPPSSQSSSDTDGDREATRRARNRRDAPSASSRTTS CSSTSTSSERSAYHFHYINYTSTHEPIRADSFSLVRASCLRALSFETLPRAPSTSTPTSSPQPSQSPSFVTTQSP GSAATGGAIFFGDAVAGYTTAYIFRIPDLHARGHKRVYAFMALSTHKERLAMKTFAMVSAAFRDLATWIQQLAEA EADRTRESSPIGSVLPNGAWVPQPPLSALDALAAADRGGSSFLTGGSSFARRMGGPGGTSSLKARGLAELVGQPD FFIELHGKFVRLLLEVGVALNS* |
| Coding | >Hirsu2|2366 ATGACATACATTCTGTGCCTGGCCCACTACTGCGATACCCATGGCCCGACGCCGTTGATGGTCACGGAGGGCCTG CGAAACCCTTGCTCCGTCTGCTTCGATGAACCCTCGCCCAGCTCCGACGTCTGCTCCACTTCTGCCGGAGACGGC CGCCCGCGCCCCGGCGCCCCGACATCCGCCCCTCGCTCTCACAGCACCACCGCCTCCCTCAACGATGCACTCCGC GAACTTCACATCGCCCGCAGCGCCTCGGTCCCGGCCTCGGAACAGGACGCGCAAGCCAAGCGCGCCGCCCTGCGC CACTCCGCCGCCGCCGCCGTCCCGCCGCCGGAACACACCTTGGACGGCCCGCGACCCATGTTCCAGCATCCGCGT CGCGACTCGAGCTTCCGACGGACCTACGACGAGACCGTCACCAAGAAACAAGGGCCCTGCGACAACTGCGCCATG ACGCTTCCCCGGCGGCAGGCCAGCGCCAGCAGCAACGACTCCGTCGCCGACTCGCCCACGCCCACGCTGCGCACT CGGACGCCCATCGAGCGAGTCTTTGCGACGACGGAACAGGCCTCGCCCCCCAGCTCGCAGTCGTCCAGCGACACC GACGGCGATCGGGAGGCGACGCGGCGTGCGCGCAATAGGAGGGACGCGCCGTCGGCCAGCTCGCGAACGACGTCG TGCTCGAGCACGTCGACGTCGTCGGAGAGGTCGGCATACCACTTCCACTACATCAACTACACCTCGACCCACGAG CCGATCCGCGCCGATTCCTTCTCCCTCGTGCGCGCCTCGTGTCTGCGCGCCCTGTCCTTCGAGACGCTGCCGCGA GCCCCCTCGACGTCGACGCCGACGTCGTCTCCGCAGCCGAGCCAGTCGCCCTCGTTCGTCACGACGCAAAGCCCC GGCTCGGCAGCGACGGGAGGCGCCATCTTCTTCGGCGACGCCGTGGCCGGCTACACGACGGCCTACATCTTCCGC ATCCCGGACCTCCACGCCCGCGGCCACAAGCGCGTCTACGCCTTCATGGCGCTCAGCACGCACAAGGAACGGCTC GCGATGAAGACGTTCGCCATGGTCTCGGCCGCCTTCCGGGACCTGGCGACGTGGATCCAGCAGCTGGCCGAGGCC GAGGCAGACCGGACCCGGGAGTCGTCGCCCATCGGCAGCGTCCTGCCCAACGGGGCCTGGGTCCCGCAGCCGCCG CTGTCGGCGTTGGACGCGCTGGCGGCCGCCGACCGCGGCGGGAGCAGCTTCCTCACCGGCGGCAGCAGCTTCGCG AGGCGCATGGGCGGCCCGGGCGGCACGTCGTCGCTCAAGGCGCGCGGCCTGGCCGAGCTCGTCGGCCAGCCCGAC TTCTTCATCGAGCTGCACGGCAAGTTCGTGCGGCTGCTGCTGGAGGTCGGGGTGGCCTTGAATTCGTGA |
| Transcript | >Hirsu2|2366 ATGACATACATTCTGTGCCTGGCCCACTACTGCGATACCCATGGCCCGACGCCGTTGATGGTCACGGAGGGCCTG CGAAACCCTTGCTCCGTCTGCTTCGATGAACCCTCGCCCAGCTCCGACGTCTGCTCCACTTCTGCCGGAGACGGC CGCCCGCGCCCCGGCGCCCCGACATCCGCCCCTCGCTCTCACAGCACCACCGCCTCCCTCAACGATGCACTCCGC GAACTTCACATCGCCCGCAGCGCCTCGGTCCCGGCCTCGGAACAGGACGCGCAAGCCAAGCGCGCCGCCCTGCGC CACTCCGCCGCCGCCGCCGTCCCGCCGCCGGAACACACCTTGGACGGCCCGCGACCCATGTTCCAGCATCCGCGT CGCGACTCGAGCTTCCGACGGACCTACGACGAGACCGTCACCAAGAAACAAGGGCCCTGCGACAACTGCGCCATG ACGCTTCCCCGGCGGCAGGCCAGCGCCAGCAGCAACGACTCCGTCGCCGACTCGCCCACGCCCACGCTGCGCACT CGGACGCCCATCGAGCGAGTCTTTGCGACGACGGAACAGGCCTCGCCCCCCAGCTCGCAGTCGTCCAGCGACACC GACGGCGATCGGGAGGCGACGCGGCGTGCGCGCAATAGGAGGGACGCGCCGTCGGCCAGCTCGCGAACGACGTCG TGCTCGAGCACGTCGACGTCGTCGGAGAGGTCGGCATACCACTTCCACTACATCAACTACACCTCGACCCACGAG CCGATCCGCGCCGATTCCTTCTCCCTCGTGCGCGCCTCGTGTCTGCGCGCCCTGTCCTTCGAGACGCTGCCGCGA GCCCCCTCGACGTCGACGCCGACGTCGTCTCCGCAGCCGAGCCAGTCGCCCTCGTTCGTCACGACGCAAAGCCCC GGCTCGGCAGCGACGGGAGGCGCCATCTTCTTCGGCGACGCCGTGGCCGGCTACACGACGGCCTACATCTTCCGC ATCCCGGACCTCCACGCCCGCGGCCACAAGCGCGTCTACGCCTTCATGGCGCTCAGCACGCACAAGGAACGGCTC GCGATGAAGACGTTCGCCATGGTCTCGGCCGCCTTCCGGGACCTGGCGACGTGGATCCAGCAGCTGGCCGAGGCC GAGGCAGACCGGACCCGGGAGTCGTCGCCCATCGGCAGCGTCCTGCCCAACGGGGCCTGGGTCCCGCAGCCGCCG CTGTCGGCGTTGGACGCGCTGGCGGCCGCCGACCGCGGCGGGAGCAGCTTCCTCACCGGCGGCAGCAGCTTCGCG AGGCGCATGGGCGGCCCGGGCGGCACGTCGTCGCTCAAGGCGCGCGGCCTGGCCGAGCTCGTCGGCCAGCCCGAC TTCTTCATCGAGCTGCACGGCAAGTTCGTGCGGCTGCTGCTGGAGGTCGGGGTGGCCTTGAATTCGTGA |
| Gene | >Hirsu2|2366 ATGACATACATTGTGAGCTTGCCCCCCCGTTTGCCATGCCTTGACACCCCTCCTCCCCTCTGCCCAAAAAAAAAA AAAATCCCGGCCCTGGAGAATCACATGCCGTCCTGGCAAAGCGCCATGCATGCAGCCATCAGAGAAGACGTGCAT CGCCTTTACCCAGGATCCCTTCCCTCGCCTTGCCGCTCCTCCACCTGCCTCACCGCATGCCACCGCGACAAATCT CGTGCTTCTACTTGCGCGGCCCATCCTCGAGCTTACTTCCGACCTCCTTCCACTGCATCGCCACCCTGCCTCCCC CCCCCCCCCCCCCTTACTTCCCCTCTACCGCACTCGCCAATCCCTACTGCACTTCTACACCTACACACCGCTCTT GTTTGCTCTCGCCCTCCCTCTCGCAGCTGCAGCCGCCTTTGTCCCCCCCTCCCCTTGAGCCCAGCAGTCGGCCCT AAGTCGTCTCACCGACTAGCCACTTTTCTCTAGGAGAACTCAGCCGTCGAGGCTCAACACCTTACTTGTTTCGAC TCACGCCTCCTGGCCCGCGAGATGGCCTTCTTCTCCCTCAGGGCTGGGGGTGGAGAGGGCGCCTTGTTTTGTCTT GTCCCTCGCATTCGTGCTACATGTTGCCGCTGTCCTTGTTCTCCCGAGTCCCCGTCGTTGCTGAATTCATCATGT CCTTGTTGATCGACTGCCATCGATTCATCTTGGCCATCTTCTGCTTCAGGCTCGACTGGGGACATGCGACTGACA GGAGCCATACAGCTGTGCCTGGCCCACTACTGCGATACCCATGGCCCGACGCCGTTGATGGTCACGGAGGGCCTG CGAAACCCTTGCTCCGTCTGCTTCGATGAACCCTCGCCCAGCTCCGACGTCTGCTCCACTTCTGCCGGAGACGGC CGCCCGCGCCCCGGCGCCCCGACATCCGCCCCTCGCTCTCACAGCACCACCGCCTCCCTCAACGATGCACTCCGC GAACTTCACATCGCCCGCAGCGCCTCGGTCCCGGCCTCGGAACAGGACGCGCAAGCCAAGCGCGCCGCCCTGCGC CACTCCGCCGCCGCCGCCGTCCCGCCGCCGGAACACACCTTGGACGGCCCGCGACCCATGTTCCAGCATCCGCGT CGCGACTCGAGCTTCCGACGGACCTACGACGAGACCGTCACCAAGAAACAAGGGCCCTGCGACAACTGCGCCATG ACGCTTCCCCGGCGGCAGGCCAGCGCCAGCAGCAACGACTCCGTCGCCGACTCGCCCACGCCCACGCTGCGCACT CGGACGCCCATCGAGCGAGTCTTTGCGACGACGGAACAGGCCTCGCCCCCCAGCTCGCAGTCGTCCAGCGACACC GACGGCGATCGGGAGGCGACGCGGCGTGCGCGCAATAGGAGGGACGCGCCGTCGGCCAGCTCGCGAACGACGTCG TGCTCGAGCACGTCGACGTCGTCGGAGAGGTCGGCATACCACTTCCACTACATCAACTACACCTCGACCCACGAG CCGATCCGCGCCGATTCCTTCTCCCTCGTGCGCGCCTCGTGTCTGCGCGCCCTGTCCTTCGAGACGCTGCCGCGA GCCCCCTCGACGTCGACGCCGACGTCGTCTCCGCAGCCGAGCCAGTCGCCCTCGTTCGTCACGACGCAAAGCCCC GGCTCGGCAGCGACGGGAGGCGCCATCTTCTTCGGCGACGCCGTGGCCGGCTACACGACGGCCTACATCTTCCGC ATCCCGGACCTCCACGCCCGCGGCCACAAGCGCGTCTACGCCTTCATGGCGCTCAGCACGCACAAGGAACGGCTC GCGATGAAGACGTTCGCCATGGTCTCGGCCGCCTTCCGGGACCTGGCGACGTGGATCCAGCAGCTGGCCGAGGCC GAGGCAGACCGGACCCGGGAGTCGTCGCCCATCGGCAGCGTCCTGCCCAACGGGGCCTGGGTCCCGCAGCCGCCG CTGTCGGCGTTGGACGCGCTGGCGGCCGCCGACCGCGGCGGGAGCAGCTTCCTCACCGGCGGCAGCAGCTTCGCG AGGCGCATGGGCGGCCCGGGCGGCACGTCGTCGCTCAAGGCGCGCGGCCTGGCCGAGCTCGTCGGCCAGCCCGAC TTCTTCATCGAGCTGCACGGCAAGTTCGTGCGGCTGCTGCTGGAGGTCGGGGTGGCCTTGAATTCGTGA |