Protein ID | Hirsu2|2356 |
Gene name | |
Location | Contig_156:17096..17951 |
Strand | - |
Gene length (bp) | 855 |
Transcript length (bp) | 783 |
Coding sequence length (bp) | 783 |
Protein length (aa) | 261 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.3459 | 0.1329 | 0.1596 | 0.5342 | 0.2201 | 0.0312 | 0.577 | 0.5373 | 0.5565 | 0.0574 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 215 | 237 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2046 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2356 MATRAGGADGGPDLPADQGQCINLRCRQCGGRDSHIRLDFAIADAKRLVVNGVELYPTAEAEHGLWMTAPVKDEA AGAAAAPREQPLGYGLAVALRASDEAEGVDLVDVDYSIREVDGRPVPGLPTVRVGLIQLVAGDGPLLIGSVATRD NLHISCGAVQCWAYRLAGVAYGVESDEALRRCCGLGAAPPNDTVPAAARPALDWHRAAGIDGVAGFQPWLLGFMA VAVLVSFIMFCVRSRRRRGIRGLCESKAGVGLGSH* |
Coding | >Hirsu2|2356 ATGGCGACGCGTGCGGGCGGCGCGGACGGCGGCCCGGACCTACCGGCGGACCAGGGCCAGTGCATCAACCTCCGG TGCCGGCAGTGCGGCGGCCGCGACAGCCACATCCGGCTCGACTTCGCCATCGCGGACGCAAAGCGGCTGGTCGTC AACGGGGTCGAGCTGTACCCGACGGCCGAGGCCGAGCACGGGCTGTGGATGACGGCGCCGGTCAAGGACGAGGCG GCCGGGGCGGCGGCGGCGCCGCGCGAGCAGCCGCTCGGGTACGGCCTCGCGGTCGCGCTGCGGGCCTCGGACGAG GCCGAGGGCGTCGACCTCGTCGACGTCGACTACTCCATCCGCGAGGTCGACGGCCGCCCCGTCCCCGGCCTGCCG ACCGTCCGCGTCGGCCTCATCCAGCTCGTCGCCGGCGACGGCCCGCTGCTCATCGGCAGCGTCGCCACCCGCGAC AACCTCCACATCAGCTGCGGCGCCGTCCAGTGCTGGGCCTACCGCCTCGCCGGCGTGGCCTACGGCGTCGAGAGC GACGAGGCCCTGCGCCGCTGCTGCGGCCTGGGCGCCGCGCCGCCCAACGACACCGTCCCTGCTGCTGCGCGCCCG GCCCTCGACTGGCATCGCGCGGCCGGGATCGACGGCGTCGCGGGCTTCCAGCCTTGGCTGCTCGGCTTCATGGCT GTTGCTGTGCTCGTGTCCTTCATCATGTTCTGCGTCAGGAGCAGGCGCAGACGCGGGATCCGTGGCCTGTGCGAG AGCAAGGCGGGCGTCGGCCTGGGGTCGCATTAG |
Transcript | >Hirsu2|2356 ATGGCGACGCGTGCGGGCGGCGCGGACGGCGGCCCGGACCTACCGGCGGACCAGGGCCAGTGCATCAACCTCCGG TGCCGGCAGTGCGGCGGCCGCGACAGCCACATCCGGCTCGACTTCGCCATCGCGGACGCAAAGCGGCTGGTCGTC AACGGGGTCGAGCTGTACCCGACGGCCGAGGCCGAGCACGGGCTGTGGATGACGGCGCCGGTCAAGGACGAGGCG GCCGGGGCGGCGGCGGCGCCGCGCGAGCAGCCGCTCGGGTACGGCCTCGCGGTCGCGCTGCGGGCCTCGGACGAG GCCGAGGGCGTCGACCTCGTCGACGTCGACTACTCCATCCGCGAGGTCGACGGCCGCCCCGTCCCCGGCCTGCCG ACCGTCCGCGTCGGCCTCATCCAGCTCGTCGCCGGCGACGGCCCGCTGCTCATCGGCAGCGTCGCCACCCGCGAC AACCTCCACATCAGCTGCGGCGCCGTCCAGTGCTGGGCCTACCGCCTCGCCGGCGTGGCCTACGGCGTCGAGAGC GACGAGGCCCTGCGCCGCTGCTGCGGCCTGGGCGCCGCGCCGCCCAACGACACCGTCCCTGCTGCTGCGCGCCCG GCCCTCGACTGGCATCGCGCGGCCGGGATCGACGGCGTCGCGGGCTTCCAGCCTTGGCTGCTCGGCTTCATGGCT GTTGCTGTGCTCGTGTCCTTCATCATGTTCTGCGTCAGGAGCAGGCGCAGACGCGGGATCCGTGGCCTGTGCGAG AGCAAGGCGGGCGTCGGCCTGGGGTCGCATTAG |
Gene | >Hirsu2|2356 ATGGCGACGCGTGCGGGCGGCGCGGACGGCGGCCCGGACCTACCGGCGGACCAGGGCCAGTGCATCAACCTCCGG TGCCGGCAGTGCGGCGGCCGCGACAGCCACATCCGGCTCGACTTCGCCATCGCGGACGCAAAGCGGCTGGTCGTC AACGGGGTCGAGCTGTACCCGACGGCCGAGGCCGAGCACGGGCTGTGGATGACGGCGCCGGTCAAGGACGAGGCG GCCGGGGCGGCGGCGGCGCCGCGCGAGCAGCCGCTCGGGTACGGCCTCGCGGTCGCGCTGCGGGCCTCGGACGAG GCCGAGGGCGTCGACCTCGTCGACGTCGACTACTCCATCCGCGAGGTCGACGGCCGCCCCGTCCCCGGCCTGCCG ACCGTCCGCGTCGGCCTCATCCAGCTCGTCGCCGGCGACGGCCCGCTGCTCATCGGCAGCGTCGCCACCCGCGAC AACCTCCACATCAGCTGCGGCGCCGTCCAGTGCTGGGCCTACCGCCTCGCCGGCGTGGCCTACGGCGTCGAGAGC GACGAGGCCCTGCGCCGCTGCTGCGGCCTGGGCGCCGCGCCGCCCAACGACACCGTCCCTGCTGCTGCGCGCCCG GCCCTCGACTGGCATCGCGCGGCCGGGATCGACGGCGTCGCGGGCTTCCAGCCTTGGCTGCTCGGCTTCATGGCT GTTGCTGTGCTCGTGTCGTGCGTTTCCTCCCCTCCCCTTCGCGTTGGACTGCGGACTGGCGTTCTTTGGCTGATC TTGGCGGCTTTCAGCTTCATCATGTTCTGCGTCAGGAGCAGGCGCAGACGCGGGATCCGTGGCCTGTGCGAGAGC AAGGCGGGCGTCGGCCTGGGGTCGCATTAG |