Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2349
Gene name
LocationContig_1557:3545..4545
Strand+
Gene length (bp)1000
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2.9E-17 13 79

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1 8 136 1.0E-50
sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1 7 134 7.0E-32
sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=1 SV=1 7 134 7.0E-32
sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1 7 134 7.0E-32
sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1 7 134 7.0E-32
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Swissprot ID Swissprot Description Start End E-value
sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1 8 136 1.0E-50
sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1 7 134 7.0E-32
sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=1 SV=1 7 134 7.0E-32
sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1 7 134 7.0E-32
sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1 7 134 7.0E-32
sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1 10 136 4.0E-31
sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1 10 134 2.0E-30
sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1 7 132 2.0E-27
sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1 SV=1 9 136 9.0E-27
sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2 11 122 8.0E-16
sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1 9 124 3.0E-12
sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1 11 113 7.0E-12
sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2 1 131 1.0E-11
sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2 11 102 1.0E-11
sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1 1 123 2.0E-11
sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1 11 104 2.0E-11
sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1 11 87 2.0E-11
sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1 11 88 2.0E-11
sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1 11 102 2.0E-11
sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1 11 88 2.0E-11
sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1 1 131 3.0E-11
sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1 1 131 3.0E-11
sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2 1 131 3.0E-11
sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1 4 102 4.0E-11
sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1 1 104 4.0E-11
sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1 11 88 1.0E-10
sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1 11 101 3.0E-10
sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2 11 105 5.0E-10
sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1 10 111 8.0E-10
sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1 10 111 8.0E-10
sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1 10 111 8.0E-10
sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2 11 88 9.0E-10
sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2 11 105 9.0E-10
sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=1 SV=1 10 111 1.0E-09
sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1 11 108 2.0E-09
sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1 14 102 3.0E-09
sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=1 SV=1 10 105 5.0E-09
sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1 11 102 1.0E-07
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3601 0.8843 0.0115 0.0236 0.0437 0.0009 0.0619 0.0382 0.0402 0.0006

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup518
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4752
Ophiocordyceps australis map64 (Brazil) OphauB2|5493
Ophiocordyceps camponoti-floridani Ophcf2|04031
Ophiocordyceps camponoti-rufipedis Ophun1|1602
Ophiocordyceps kimflemingae Ophio5|1295
Ophiocordyceps kimflemingae Ophio5|1296
Ophiocordyceps subramaniannii Hirsu2|2349 (this protein)
Ophiocordyceps subramaniannii Hirsu2|2435

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2349
MSDHEFAGNDDLSLPKATVQKIVGEILPPQGGVAFAKEARDLLIECCVEFITLISSEANEISEKEAKKTIACDHI
TKALEQLGFADYVPAVLEAAAEHKEVQKGREKKADKFANSGMSMEELARLQEEQFAQARQRHT*
Coding >Hirsu2|2349
ATGTCCGATCACGAATTCGCAGGCAACGATGACCTATCTCTTCCCAAAGCAACCGTCCAGAAGATTGTGGGGGAA
ATTCTCCCACCGCAGGGGGGGGTAGCCTTCGCCAAGGAGGCACGCGACCTTCTCATAGAATGTTGCGTCGAGTTT
ATTACTCTCATCTCCTCCGAGGCCAACGAGATATCAGAGAAGGAGGCAAAGAAGACGATTGCGTGCGACCACATC
ACCAAGGCACTCGAACAGCTCGGCTTCGCCGACTATGTCCCCGCCGTGCTAGAGGCCGCCGCCGAACACAAGGAG
GTGCAAAAGGGGCGCGAGAAGAAGGCCGACAAGTTCGCCAACAGTGGCATGTCGATGGAGGAGCTGGCCCGTCTG
CAAGAGGAGCAGTTTGCACAGGCACGGCAACGGCACACTTAG
Transcript >Hirsu2|2349
ATGTCCGATCACGAATTCGCAGGCAACGATGACCTATCTCTTCCCAAAGCAACCGTCCAGAAGATTGTGGGGGAA
ATTCTCCCACCGCAGGGGGGGGTAGCCTTCGCCAAGGAGGCACGCGACCTTCTCATAGAATGTTGCGTCGAGTTT
ATTACTCTCATCTCCTCCGAGGCCAACGAGATATCAGAGAAGGAGGCAAAGAAGACGATTGCGTGCGACCACATC
ACCAAGGCACTCGAACAGCTCGGCTTCGCCGACTATGTCCCCGCCGTGCTAGAGGCCGCCGCCGAACACAAGGAG
GTGCAAAAGGGGCGCGAGAAGAAGGCCGACAAGTTCGCCAACAGTGGCATGTCGATGGAGGAGCTGGCCCGTCTG
CAAGAGGAGCAGTTTGCACAGGCACGGCAACGGCACACTTAG
Gene >Hirsu2|2349
ATGTCCGATCACGAATTCGCAGGTGAGCCCAAGATACGCGTCGCCCGTCTTTGTGTCCGCGTCCCTGTTTGCCGT
CTGCCGTCTCTTGTTCACCCTCCGGACAAAGGCTCGTGAGCGTGGCAACGTCATCCGACCATCCCATGGTCGCCA
GCTGCGAGGCCAATGCTGGTCATCATCTCTTTCACACCTGTTTATCTCCTCCGTCTTGTCCTTCAAGCCCCTCTC
TTCTCCAAGAGCGCCGGCGGCCTCCCCTTCTTCGCATCCCATGCTTGCTGCTCTCTCCCCGTCTCTTTTTCTTTC
TCCCTTTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTCATTGCAACCACACAAGAA
TACAAGATCCGACTTCCGTCAGCTTCATTATGCGTCGCAAGGCAGACCGTTACATCCTACCCTATCCCGCGCGCA
AGTATCAGAACGGTGGCTAACGTCGCTCCAGGCAACGATGACCTATCTCTTCCCAAAGGTACGATGGCCCGGAGC
CGTGGCCGAAGCCCCCGCCTCCTTTCACGCCGCTGACTCCTCGTCGCAGCAACCGTCCAGAAGATTGTGGGGGAA
ATTCTCCCACCGCAGGGGGGGGTAGCCTTCGCCAAGGAGGCACGCGACCTTCTCATAGAATGTTGCGTCGAGTTT
ATTACTCTCATCTCCTCCGAGGCCAACGAGATATCAGAGAAGGAGGCAAAGAAGACGATTGCGTGCGACCACATC
ACCAAGGCACTCGAACAGCTCGGCTTCGCCGACTATGTCCCCGCCGTGCTAGAGGCCGCCGCCGAACACAAGGAG
GTGCAAAAGGTGAGGCTTCCTTGCGCCTTGCCGCCTGTCTGGTCTCTGACTGGCTTGCTTGCGACAGGGGCGCGA
GAAGAAGGCCGACAAGTTCGCCAACAGTGGCATGTCGATGGAGGAGCTGGCCCGTCTGCAAGAGGAGCAGTTTGC
ACAGGCACGGCAACGGCACACTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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