© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2344 |
| Gene name | |
| Location | Contig_1556:1145..2457 |
| Strand | + |
| Gene length (bp) | 1312 |
| Transcript length (bp) | 1101 |
| Coding sequence length (bp) | 1101 |
| Protein length (aa) | 367 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02586 | SRAP | SOS response associated peptidase (SRAP) | 1.7E-79 | 1 | 241 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04471|YM04_YEAST | Putative peptidase YMR114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR114C PE=1 SV=1 | 1 | 252 | 4.0E-42 |
| sp|Q5ZJT1|HMCES_CHICK | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Gallus gallus GN=HMCES PE=2 SV=1 | 1 | 253 | 2.0E-29 |
| sp|O64131|YOQW_BPSPB | Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 | 1 | 249 | 1.0E-26 |
| sp|O31916|YOQW_BACSU | Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 | 1 | 249 | 1.0E-26 |
| sp|Q6P7N4|HMCES_XENTR | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus tropicalis GN=hmces PE=2 SV=1 | 74 | 246 | 5.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04471|YM04_YEAST | Putative peptidase YMR114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR114C PE=1 SV=1 | 1 | 252 | 4.0E-42 |
| sp|Q5ZJT1|HMCES_CHICK | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Gallus gallus GN=HMCES PE=2 SV=1 | 1 | 253 | 2.0E-29 |
| sp|O64131|YOQW_BPSPB | Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 | 1 | 249 | 1.0E-26 |
| sp|O31916|YOQW_BACSU | Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 | 1 | 249 | 1.0E-26 |
| sp|Q6P7N4|HMCES_XENTR | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus tropicalis GN=hmces PE=2 SV=1 | 74 | 246 | 5.0E-26 |
| sp|Q8R1M0|HMCES_MOUSE | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Mus musculus GN=Hmces PE=1 SV=1 | 77 | 331 | 6.0E-25 |
| sp|Q6IND6|HMCES_XENLA | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus laevis GN=hmces PE=2 SV=1 | 74 | 249 | 9.0E-25 |
| sp|Q5XIJ1|HMCES_RAT | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Rattus norvegicus GN=Hmces PE=2 SV=1 | 77 | 331 | 3.0E-24 |
| sp|Q5NVR0|HMCES_PONAB | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Pongo abelii GN=HMCES PE=2 SV=1 | 77 | 253 | 1.0E-23 |
| sp|Q96FZ2|HMCES_HUMAN | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Homo sapiens GN=HMCES PE=1 SV=1 | 77 | 253 | 4.0E-23 |
| sp|O34906|YOAM_BACSU | Putative SOS response-associated peptidase YoaM OS=Bacillus subtilis (strain 168) GN=yoaM PE=3 SV=1 | 73 | 249 | 1.0E-21 |
| sp|O34915|YOBE_BACSU | Putative SOS response-associated peptidase YobE OS=Bacillus subtilis (strain 168) GN=yobE PE=3 SV=1 | 1 | 249 | 3.0E-20 |
| sp|P76318|YEDK_ECOLI | Putative SOS response-associated peptidase YedK OS=Escherichia coli (strain K12) GN=yedK PE=1 SV=2 | 1 | 252 | 3.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | Yes |
| GO:0003697 | single-stranded DNA binding | Yes |
| GO:0018142 | protein-DNA covalent cross-linking | Yes |
| GO:0009987 | cellular process | No |
| GO:0003677 | DNA binding | No |
| GO:0050896 | response to stimulus | No |
| GO:0008150 | biological_process | No |
| GO:0018143 | nucleic acid-protein covalent cross-linking | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0019538 | protein metabolic process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0003676 | nucleic acid binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0036211 | protein modification process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3488 | 0.7727 | 0.0755 | 0.0505 | 0.2529 | 0.0147 | 0.0382 | 0.0207 | 0.0332 | 0.0083 |
| Orthofinder run ID | 4 |
| Orthogroup | 4996 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2344 MCGRYALALRASQIRQMLEEDDMPVADAPDDEGAGSARQSFNFAPGYHGVVYRADTPDWGAGEPGEPAAVRYRLQ AMRWGLIPSWTKRSPDYATVMRTINCRDDSLAAAGGMWATMKARKRCLVLAQGFFEWLKTGPRHRLPHYVKRRDG RLMCFAGLWDCVQYEGSEEKTYSYTIITTDSNKQLRFLHDRMPVLFDPGSDDITTWLDPARREWDRPLQALLRPF DGELDVYPVSQDVGKVGNNSPSFVIPLDSKENRSNIANFFAKTAGAKTRPEGGAEGPAANNAAVEEAKQRLAADD DGDAHGSPEKRKASSVGAESPPPKKKAAVGSRERFDPTRNKHRSPAKTREPGSQKITKFFGGGGGA* |
| Coding | >Hirsu2|2344 ATGTGCGGCCGGTATGCGCTGGCACTGCGTGCCTCCCAGATCAGGCAGATGCTCGAGGAGGACGACATGCCGGTG GCGGACGCGCCCGACGACGAGGGCGCCGGCTCGGCCCGGCAGTCGTTCAACTTCGCGCCGGGGTACCACGGCGTC GTGTACCGCGCCGACACGCCGGACTGGGGCGCCGGTGAGCCCGGCGAGCCGGCCGCCGTCCGGTACCGGCTGCAG GCGATGCGGTGGGGGCTGATCCCATCGTGGACGAAGCGCAGCCCGGACTACGCGACGGTGATGCGCACCATCAAC TGCCGCGACGACTCCCTCGCCGCCGCGGGCGGCATGTGGGCGACCATGAAGGCCCGTAAGCGCTGCCTCGTCCTC GCCCAGGGCTTCTTCGAGTGGCTCAAGACCGGGCCGCGGCATCGGCTGCCGCACTACGTCAAGCGCAGGGACGGC CGGCTCATGTGCTTCGCCGGGCTGTGGGACTGCGTCCAGTACGAGGGCTCGGAGGAGAAGACGTACAGCTACACT ATCATCACGACCGACTCCAACAAGCAGCTCCGCTTCCTGCACGACCGCATGCCCGTCCTCTTCGACCCGGGCTCC GACGACATCACGACCTGGCTCGACCCGGCGCGCCGCGAGTGGGACCGCCCGCTGCAGGCGCTTCTCAGGCCCTTC GACGGCGAGCTCGACGTCTACCCCGTCAGCCAGGACGTCGGCAAGGTCGGCAACAACTCGCCCTCGTTCGTCATC CCGCTCGACAGCAAGGAAAACCGGTCCAACATCGCCAACTTCTTCGCCAAGACCGCGGGGGCCAAGACCAGGCCG GAAGGGGGCGCCGAGGGGCCGGCCGCGAACAACGCCGCCGTCGAGGAGGCGAAGCAGCGGCTGGCCGCCGACGAC GATGGCGACGCCCACGGCTCCCCGGAGAAGCGCAAGGCGTCGTCCGTCGGCGCAGAAAGCCCGCCGCCGAAGAAG AAGGCCGCCGTCGGGTCGAGGGAGAGGTTTGACCCGACCAGGAACAAGCACCGGAGCCCGGCCAAGACCAGGGAG CCCGGCTCGCAGAAGATCACCAAGTTCTTCGGCGGCGGCGGCGGCGCGTAG |
| Transcript | >Hirsu2|2344 ATGTGCGGCCGGTATGCGCTGGCACTGCGTGCCTCCCAGATCAGGCAGATGCTCGAGGAGGACGACATGCCGGTG GCGGACGCGCCCGACGACGAGGGCGCCGGCTCGGCCCGGCAGTCGTTCAACTTCGCGCCGGGGTACCACGGCGTC GTGTACCGCGCCGACACGCCGGACTGGGGCGCCGGTGAGCCCGGCGAGCCGGCCGCCGTCCGGTACCGGCTGCAG GCGATGCGGTGGGGGCTGATCCCATCGTGGACGAAGCGCAGCCCGGACTACGCGACGGTGATGCGCACCATCAAC TGCCGCGACGACTCCCTCGCCGCCGCGGGCGGCATGTGGGCGACCATGAAGGCCCGTAAGCGCTGCCTCGTCCTC GCCCAGGGCTTCTTCGAGTGGCTCAAGACCGGGCCGCGGCATCGGCTGCCGCACTACGTCAAGCGCAGGGACGGC CGGCTCATGTGCTTCGCCGGGCTGTGGGACTGCGTCCAGTACGAGGGCTCGGAGGAGAAGACGTACAGCTACACT ATCATCACGACCGACTCCAACAAGCAGCTCCGCTTCCTGCACGACCGCATGCCCGTCCTCTTCGACCCGGGCTCC GACGACATCACGACCTGGCTCGACCCGGCGCGCCGCGAGTGGGACCGCCCGCTGCAGGCGCTTCTCAGGCCCTTC GACGGCGAGCTCGACGTCTACCCCGTCAGCCAGGACGTCGGCAAGGTCGGCAACAACTCGCCCTCGTTCGTCATC CCGCTCGACAGCAAGGAAAACCGGTCCAACATCGCCAACTTCTTCGCCAAGACCGCGGGGGCCAAGACCAGGCCG GAAGGGGGCGCCGAGGGGCCGGCCGCGAACAACGCCGCCGTCGAGGAGGCGAAGCAGCGGCTGGCCGCCGACGAC GATGGCGACGCCCACGGCTCCCCGGAGAAGCGCAAGGCGTCGTCCGTCGGCGCAGAAAGCCCGCCGCCGAAGAAG AAGGCCGCCGTCGGGTCGAGGGAGAGGTTTGACCCGACCAGGAACAAGCACCGGAGCCCGGCCAAGACCAGGGAG CCCGGCTCGCAGAAGATCACCAAGTTCTTCGGCGGCGGCGGCGGCGCGTAG |
| Gene | >Hirsu2|2344 ATGTGCGGCCGGTATGCGCTGGCACTGGTACGTCCCCTTTCCCTTCTCCGTCCCTCCCCTCCCCCCGGGGACGGG CCGGCACTGACGCGACGAGCCGGCAGCGTGCCTCCCAGATCAGGCAGATGCTCGAGGAGGACGACATGCCGGTGG CGGACGCGCCCGACGACGAGGGCGCCGGCTCGGCCCGGCAGTCGTTCAACTTCGCGCCGGGGTACCACGGCGTCG TGTACCGCGCCGACACGCCGGACTGGGGCGCCGGTGAGCCCGGCGAGCCGGCCGCCGTCCGGTACCGGCTGCAGG CGATGCGGTGGGGGCTGATCCCATCGTGGACGAAGCGCAGCCCGGACTACGCGACGGTGATGCGCACCATCAACT GCCGCGACGACTCCCTCGCCGCCGCGGGCGGCATGTGGGCGACCATGAAGGCCCGTAAGCGCTGCCTCGTCCTCG CCCAGGGCTTCTTCGAGTGGCTCAAGACCGGGCCGCGGCATCGGCTGCCGCACTACGTCAAGCGCAGGGACGGCC GGCTCATGTGCTTCGCCGGGCTGTGGGACTGCGTCCAGTACGAGGGTGAGGCACAAGGGCCCAAAAACGCGAAAA TATCAACACCGTCGCAATCCCCCTCTCGCCATCTTCACTCTGCTCCCCCTCCTCCTGCTCCTCTTCCTTTTTTTT TCCCCCTTAGCTGACCGTGGCGCTTCCCCCAGGCTCGGAGGAGAAGACGTACAGCTACACTATCATCACGACCGA CTCCAACAAGCAGCTCCGCTTCCTGCACGACCGCATGCCCGTCCTCTTCGACCCGGGCTCCGACGACATCACGAC CTGGCTCGACCCGGCGCGCCGCGAGTGGGACCGCCCGCTGCAGGCGCTTCTCAGGCCCTTCGACGGCGAGCTCGA CGTCTACCCCGTCAGCCAGGACGTCGGCAAGGTCGGCAACAACTCGCCCTCGTTCGTCATCCCGCTCGACAGCAA GGAAAACCGGTCCAACATCGCCAACTTCTTCGCCAAGACCGCGGGGGCCAAGACCAGGCCGGAAGGGGGCGCCGA GGGGCCGGCCGCGAACAACGCCGCCGTCGAGGAGGCGAAGCAGCGGCTGGCCGCCGACGACGATGGCGACGCCCA CGGCTCCCCGGAGAAGCGCAAGGCGTCGTCCGTCGGCGCAGAAAGCCCGCCGCCGAAGAAGAAGGCCGCCGTCGG GTCGAGGGAGAGGTTTGACCCGACCAGGAACAAGCACCGGAGCCCGGCCAAGACCAGGGAGCCCGGCTCGCAGAA GATCACCAAGTTCTTCGGCGGCGGCGGCGGCGCGTAG |