Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2341
Gene name
LocationContig_1555:638..1460
Strand-
Gene length (bp)822
Transcript length (bp)636
Coding sequence length (bp)636
Protein length (aa) 212

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04387 PTPLA Protein tyrosine phosphatase-like protein, PTPLA 7.7E-50 56 204

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14346|HACD_SCHPO Probable very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C2.15c PE=3 SV=2 9 209 2.0E-41
sp|P40857|HACD_YEAST Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PHS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHS1 PE=1 SV=1 1 206 1.0E-35
sp|O17040|HACD_CAEEL Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 OS=Caenorhabditis elegans GN=hpo-8 PE=3 SV=2 13 211 5.0E-32
sp|Q7XSZ4|HACDA_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2 7 199 4.0E-31
sp|Q8VZB2|HACD_ARATH Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1 7 203 6.0E-31
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Swissprot ID Swissprot Description Start End E-value
sp|O14346|HACD_SCHPO Probable very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C2.15c PE=3 SV=2 9 209 2.0E-41
sp|P40857|HACD_YEAST Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PHS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHS1 PE=1 SV=1 1 206 1.0E-35
sp|O17040|HACD_CAEEL Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 OS=Caenorhabditis elegans GN=hpo-8 PE=3 SV=2 13 211 5.0E-32
sp|Q7XSZ4|HACDA_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2 7 199 4.0E-31
sp|Q8VZB2|HACD_ARATH Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1 7 203 6.0E-31
sp|Q5ZEJ0|HACDB_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1 7 199 7.0E-31
sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=HACD2 PE=2 SV=2 6 211 6.0E-28
sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens GN=HACD2 PE=1 SV=1 6 211 9.0E-28
sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Pongo abelii GN=HACD2 PE=2 SV=1 6 211 1.0E-27
sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Mus musculus GN=Hacd2 PE=1 SV=1 6 203 3.0E-27
sp|Q9QY80|HACD1_MOUSE Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE=2 SV=1 9 210 8.0E-24
sp|B0YJ81|HACD1_HUMAN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Homo sapiens GN=HACD1 PE=1 SV=1 9 204 2.0E-23
sp|Q9N1R5|HACD1_SHEEP Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Ovis aries GN=HACD1 PE=2 SV=1 9 204 5.0E-23
sp|Q4W1W1|HACD1_CANLF Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris GN=HACD1 PE=2 SV=1 9 204 6.0E-23
sp|Q9P035|HACD3_HUMAN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Homo sapiens GN=HACD3 PE=1 SV=2 2 211 4.0E-13
sp|Q5NVQ2|HACD3_PONAB Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Pongo abelii GN=HACD3 PE=2 SV=1 2 211 5.0E-13
sp|Q5ZM57|HACD3_CHICK Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Gallus gallus GN=HACD3 PE=2 SV=1 5 211 1.0E-12
sp|Q8K2C9|HACD3_MOUSE Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Mus musculus GN=Hacd3 PE=1 SV=2 2 211 2.0E-11
sp|A7YY55|HACD3_BOVIN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Bos taurus GN=HACD3 PE=2 SV=1 2 211 7.0E-10
sp|A2AKM2|HACD4_MOUSE Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 OS=Mus musculus GN=Hacd4 PE=2 SV=2 10 211 4.0E-08
sp|Q7SY06|HACD3_DANRE Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 SV=2 9 159 2.0E-07
sp|Q5VWC8|HACD4_HUMAN Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 OS=Homo sapiens GN=HACD4 PE=1 SV=1 10 211 2.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 31 0.45

Transmembrane Domains

Domain # Start End Length
1 13 35 22
2 105 124 19
3 144 161 17
4 176 193 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2341
MAPPPPSPLRTRYLVLYNLASAAAWAVVLGRTAGACAREGPGAVYGAVGAWTKWVQTAAVAEVLHALFGLVRAPV
ATTLMQVSSRLLLVWAVVDASPRLATAEPWYASMLAAWAAAEVVRYGYFARALVRPPPAALVWLRYSAFYLLYPL
GIGSECALVWAATRPEDGRGPLERRLLYAVLLIYVPGSYVLFTHMMSQRRKVLRSLGAKDR*
Coding >Hirsu2|2341
ATGGCACCGCCGCCGCCGTCGCCGCTCCGCACGCGCTACCTGGTGCTGTACAACCTGGCCTCGGCCGCGGCGTGG
GCCGTGGTGCTGGGCCGCACGGCCGGCGCGTGCGCCCGCGAGGGGCCCGGCGCCGTCTACGGCGCCGTCGGCGCC
TGGACCAAGTGGGTGCAGACGGCGGCCGTGGCCGAGGTGCTGCACGCGCTCTTCGGCCTCGTCCGCGCCCCCGTC
GCCACGACGCTCATGCAGGTCTCGTCGCGCCTCCTGCTCGTGTGGGCCGTCGTCGACGCCTCGCCGCGCCTGGCC
ACGGCCGAGCCCTGGTACGCGTCCATGCTGGCCGCCTGGGCCGCGGCCGAGGTGGTGCGCTACGGCTACTTCGCG
CGCGCCCTCGTGCGCCCGCCGCCCGCCGCCCTCGTCTGGCTGCGCTACAGCGCCTTCTACCTGCTGTACCCGCTC
GGCATCGGCAGCGAGTGCGCCCTCGTCTGGGCCGCGACCCGCCCGGAAGACGGCCGCGGCCCGCTCGAGCGCCGC
CTGCTCTATGCCGTCCTGCTCATCTACGTGCCCGGCTCCTACGTCCTCTTCACCCACATGATGAGCCAGCGCAGG
AAGGTGCTGCGCTCCCTCGGCGCAAAGGACCGTTGA
Transcript >Hirsu2|2341
ATGGCACCGCCGCCGCCGTCGCCGCTCCGCACGCGCTACCTGGTGCTGTACAACCTGGCCTCGGCCGCGGCGTGG
GCCGTGGTGCTGGGCCGCACGGCCGGCGCGTGCGCCCGCGAGGGGCCCGGCGCCGTCTACGGCGCCGTCGGCGCC
TGGACCAAGTGGGTGCAGACGGCGGCCGTGGCCGAGGTGCTGCACGCGCTCTTCGGCCTCGTCCGCGCCCCCGTC
GCCACGACGCTCATGCAGGTCTCGTCGCGCCTCCTGCTCGTGTGGGCCGTCGTCGACGCCTCGCCGCGCCTGGCC
ACGGCCGAGCCCTGGTACGCGTCCATGCTGGCCGCCTGGGCCGCGGCCGAGGTGGTGCGCTACGGCTACTTCGCG
CGCGCCCTCGTGCGCCCGCCGCCCGCCGCCCTCGTCTGGCTGCGCTACAGCGCCTTCTACCTGCTGTACCCGCTC
GGCATCGGCAGCGAGTGCGCCCTCGTCTGGGCCGCGACCCGCCCGGAAGACGGCCGCGGCCCGCTCGAGCGCCGC
CTGCTCTATGCCGTCCTGCTCATCTACGTGCCCGGCTCCTACGTCCTCTTCACCCACATGATGAGCCAGCGCAGG
AAGGTGCTGCGCTCCCTCGGCGCAAAGGACCGTTGA
Gene >Hirsu2|2341
ATGGCACCGCCGCCGCCGTCGCCGCTCCGCACGCGCTACCTGGTGCTGTACAACCTGGCCTCGGCCGCGGCGTGG
GCCGTGGTGCTGGGCCGCACGGCCGGCGCGTGCGCCCGCGAGGGGCCCGGCGCCGTCTACGGCGCCGTCGGCGCC
TGGACCAAGTGGGTGCAGACGGCGGCCGTGGCCGAGGTGCTGCACGCGCTCTTCGGTACGTCTGGCGGCGAGACG
GAGGCCGTGTGCCGGAGAGAGAAGGGCGAGAAGCGTGGGCCGCGAGGGGAGAGGGCAGAGAGAAGACGGTGCTGA
CGATTTTTGAACGGCAGGCCTCGTCCGCGCCCCCGTCGCCACGACGCTCATGCAGGTCTCGTCGCGCCTCCTGCT
CGTGTGGGCCGTCGTCGACGCCTCGCCGCGCCTGGCCACGGCCGAGCCCTGGTACGCGTCCATGCTGGCCGCCTG
GGCCGCGGCCGAGGTGGTGCGCTACGGCTACTTCGCGCGCGCCCTCGTGCGCCCGCCGCCCGCCGCCCTCGTCTG
GCTGCGCTACAGCGCCTTCTACCTGCTGTACCCGCTCGGCATCGGCAGCGAGTGCGCCCTCGTCTGGGCCGCGAC
CCGCCCGGAAGACGGCCGCGGCCCGCTCGAGCGCCGCCTGCTCTATGCCGTCCTGCTCATCTACGTGCCCGGTCT
GTCCACCCCCCCCCTTCTGTTCTCCTACGACGGGGCCGGCTTTGCTGACGACGACGACGACGACGCCCAGGCTCC
TACGTCCTCTTCACCCACATGATGAGCCAGCGCAGGAAGGTGCTGCGCTCCCTCGGCGCAAAGGACCGTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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