Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2340
Gene name
LocationContig_1555:46..375
Strand+
Gene length (bp)329
Transcript length (bp)219
Coding sequence length (bp)219
Protein length (aa) 73

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5994 0.3028 0.1879 0.2251 0.1371 0.0219 0.1727 0.4805 0.2536 0.0083

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2043
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6865
Ophiocordyceps australis map64 (Brazil) OphauB2|6378
Ophiocordyceps camponoti-floridani Ophcf2|04933
Ophiocordyceps kimflemingae Ophio5|584
Ophiocordyceps subramaniannii Hirsu2|2340 (this protein)
Ophiocordyceps subramaniannii Hirsu2|6033

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2340
LPRGAPAGDWAEAVNDKALDETRAHMNMFEPTENPGYETLTNDAAARIERWFQNDWYAASDDPDPQPVEEVS*
Coding >Hirsu2|2340
CTGCCGCGCGGCGCCCCGGCCGGCGACTGGGCCGAGGCCGTCAACGACAAGGCCCTGGACGAGACGCGCGCCCAC
ATGAACATGTTCGAGCCGACGGAGAACCCCGGCTACGAGACGCTCACCAACGACGCCGCCGCCCGCATCGAGCGC
TGGTTCCAGAACGACTGGTACGCAGCCAGCGACGACCCCGACCCGCAGCCGGTCGAGGAGGTGTCGTGA
Transcript >Hirsu2|2340
CTGCCGCGCGGCGCCCCGGCCGGCGACTGGGCCGAGGCCGTCAACGACAAGGCCCTGGACGAGACGCGCGCCCAC
ATGAACATGTTCGAGCCGACGGAGAACCCCGGCTACGAGACGCTCACCAACGACGCCGCCGCCCGCATCGAGCGC
TGGTTCCAGAACGACTGGTACGCAGCCAGCGACGACCCCGACCCGCAGCCGGTCGAGGAGGTGTCGTGA
Gene >Hirsu2|2340
CTGCCGCGCGGCGCCCCGGCCGGCGACTGGGCCGAGGCCGTCAACGACAAGGCCCTGGACGAGACGCGCGCCCAC
ATGAGTACGTCACACACAGACACACACACACACACACACACACACACATATATAACCCTATCTATATAACTGGAG
GAAAGCTGGCTGACCGACCGCGGGGCCGGCGACAAAAAGACATGTTCGAGCCGACGGAGAACCCCGGCTACGAGA
CGCTCACCAACGACGCCGCCGCCCGCATCGAGCGCTGGTTCCAGAACGACTGGTACGCAGCCAGCGACGACCCCG
ACCCGCAGCCGGTCGAGGAGGTGTCGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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