© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2338 |
| Gene name | |
| Location | Contig_1554:2694..4093 |
| Strand | + |
| Gene length (bp) | 1399 |
| Transcript length (bp) | 1344 |
| Coding sequence length (bp) | 1344 |
| Protein length (aa) | 448 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.6793 | 0.3205 | 0.0439 | 0.3735 | 0.1486 | 0.035 | 0.1097 | 0.3315 | 0.1238 | 0.0793 |
| Orthofinder run ID | 4 |
| Orthogroup | 4995 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2338 MSIFSHIRRSRQQAKEHNAKLAEQEKKEQQKVPYRHVPTHAATDAFASAPPSWREVDRPRIQEENRRRSAMAASG HHMNMPGVPRIGSSSLSYVTYPGDDATPPVRLSRANSYTGVSAYPDRSRDTLYPVPYISYSQPASLKGKEAVVRG DGYDAHHRASPTSSKGEPSPSGSSSGSQDDLEMKPSRASTRWPLPSRPRRTSDASAERCAAVAKPATVKPPRPSS YVRDSRPPPSMRGFASIAQVAAPPPPLHLGAMAHPGPSAAAPLSDRGNVRRSPPSPGGSTPRRNSASSLPTLTSA SSRPPVSIPGTPASPTAVQAEYFSSWASTVPNTESDKRRSFEAPMTTYAPAQQSLRERRALRAMGVSELERIESA GGEPQQDFVHAERSRILPRAVAHEDLVNIFPEPVSLPDPSVGKSKKSKKGAGGGRLVKKSRWSGFKAAAVVV* |
| Coding | >Hirsu2|2338 ATGTCCATCTTCTCGCACATTCGAAGGAGTCGCCAGCAGGCCAAGGAACATAACGCAAAGTTGGCCGAGCAAGAA AAGAAGGAGCAGCAAAAGGTGCCCTACAGACATGTGCCGACGCACGCCGCCACCGACGCCTTTGCCAGTGCTCCG CCCAGCTGGCGCGAGGTCGACCGGCCTCGCATCCAGGAGGAGAACCGCAGGAGGAGCGCCATGGCTGCCAGCGGC CACCACATGAACATGCCCGGCGTGCCTCGGATCGGCAGCAGCAGCCTCTCCTACGTCACGTATCCCGGCGACGAC GCCACGCCTCCGGTCCGCCTGTCCCGGGCCAACAGCTACACGGGCGTCTCCGCCTACCCGGATCGCAGCCGCGAC ACGCTCTATCCAGTGCCGTACATCTCCTATTCGCAGCCCGCCTCGCTCAAGGGGAAAGAAGCCGTGGTCAGGGGG GATGGCTACGACGCGCACCACCGAGCGAGCCCTACGTCGAGCAAAGGCGAACCGTCGCCGTCGGGGAGCTCGAGC GGCTCCCAGGATGATCTGGAGATGAAGCCTTCGCGTGCGTCGACCCGTTGGCCGCTCCCCAGCCGGCCCCGAAGA ACATCAGATGCCTCGGCTGAGCGCTGCGCGGCGGTGGCCAAGCCGGCCACGGTCAAGCCCCCGAGACCGTCGAGC TACGTCCGGGACTCGCGCCCTCCCCCCTCGATGCGGGGCTTCGCCTCGATCGCTCAGGTCGCTGCGCCTCCTCCA CCTCTGCACCTTGGCGCCATGGCCCACCCGGGTCCCTCAGCGGCCGCACCGCTCTCCGACCGGGGCAACGTGCGC AGATCGCCGCCCTCCCCCGGCGGCTCGACGCCTCGCCGGAACTCGGCCTCGTCCCTGCCCACCCTCACGTCCGCG TCTTCACGCCCGCCCGTCTCGATCCCAGGAACGCCCGCCTCCCCAACCGCGGTCCAGGCGGAGTACTTCTCCAGC TGGGCCTCGACCGTCCCGAACACCGAATCGGACAAACGACGATCGTTCGAGGCGCCGATGACGACGTATGCGCCC GCTCAGCAGAGCCTGAGGGAGAGGAGGGCGCTGCGGGCGATGGGCGTTTCCGAGCTCGAGCGTATCGAATCCGCA GGCGGAGAGCCTCAACAGGACTTTGTCCACGCCGAACGCAGTCGGATCCTGCCGCGCGCGGTGGCGCACGAGGAT CTAGTCAACATATTTCCGGAGCCCGTGTCGCTGCCCGATCCGTCCGTCGGCAAAAGCAAGAAGAGCAAGAAAGGG GCAGGAGGGGGGAGGCTCGTCAAGAAAAGCCGATGGTCGGGGTTCAAGGCCGCAGCTGTGGTCGTATAG |
| Transcript | >Hirsu2|2338 ATGTCCATCTTCTCGCACATTCGAAGGAGTCGCCAGCAGGCCAAGGAACATAACGCAAAGTTGGCCGAGCAAGAA AAGAAGGAGCAGCAAAAGGTGCCCTACAGACATGTGCCGACGCACGCCGCCACCGACGCCTTTGCCAGTGCTCCG CCCAGCTGGCGCGAGGTCGACCGGCCTCGCATCCAGGAGGAGAACCGCAGGAGGAGCGCCATGGCTGCCAGCGGC CACCACATGAACATGCCCGGCGTGCCTCGGATCGGCAGCAGCAGCCTCTCCTACGTCACGTATCCCGGCGACGAC GCCACGCCTCCGGTCCGCCTGTCCCGGGCCAACAGCTACACGGGCGTCTCCGCCTACCCGGATCGCAGCCGCGAC ACGCTCTATCCAGTGCCGTACATCTCCTATTCGCAGCCCGCCTCGCTCAAGGGGAAAGAAGCCGTGGTCAGGGGG GATGGCTACGACGCGCACCACCGAGCGAGCCCTACGTCGAGCAAAGGCGAACCGTCGCCGTCGGGGAGCTCGAGC GGCTCCCAGGATGATCTGGAGATGAAGCCTTCGCGTGCGTCGACCCGTTGGCCGCTCCCCAGCCGGCCCCGAAGA ACATCAGATGCCTCGGCTGAGCGCTGCGCGGCGGTGGCCAAGCCGGCCACGGTCAAGCCCCCGAGACCGTCGAGC TACGTCCGGGACTCGCGCCCTCCCCCCTCGATGCGGGGCTTCGCCTCGATCGCTCAGGTCGCTGCGCCTCCTCCA CCTCTGCACCTTGGCGCCATGGCCCACCCGGGTCCCTCAGCGGCCGCACCGCTCTCCGACCGGGGCAACGTGCGC AGATCGCCGCCCTCCCCCGGCGGCTCGACGCCTCGCCGGAACTCGGCCTCGTCCCTGCCCACCCTCACGTCCGCG TCTTCACGCCCGCCCGTCTCGATCCCAGGAACGCCCGCCTCCCCAACCGCGGTCCAGGCGGAGTACTTCTCCAGC TGGGCCTCGACCGTCCCGAACACCGAATCGGACAAACGACGATCGTTCGAGGCGCCGATGACGACGTATGCGCCC GCTCAGCAGAGCCTGAGGGAGAGGAGGGCGCTGCGGGCGATGGGCGTTTCCGAGCTCGAGCGTATCGAATCCGCA GGCGGAGAGCCTCAACAGGACTTTGTCCACGCCGAACGCAGTCGGATCCTGCCGCGCGCGGTGGCGCACGAGGAT CTAGTCAACATATTTCCGGAGCCCGTGTCGCTGCCCGATCCGTCCGTCGGCAAAAGCAAGAAGAGCAAGAAAGGG GCAGGAGGGGGGAGGCTCGTCAAGAAAAGCCGATGGTCGGGGTTCAAGGCCGCAGCTGTGGTCGTATAG |
| Gene | >Hirsu2|2338 ATGTCCATCTTCTCGCACATTCGAAGGAGTCGCCAGCAGGCCAAGGAACATAACGCAAAGTTGGCCGAGCAAGAA AAGAAGGAGCAGCAAAAGGTGCCCTACAGACATGTGCCGACGCACGCCGCCACCGACGCCTTTGCCAGTGCTCCG CCCAGCTGGCGCGAGGTCGACCGGCCTCGCATCCAGGAGGAGAACCGCAGGAGGAGCGCCATGGCTGCCAGCGGC CACCACATGAACATGCCCGGCGTGCCTCGGATCGGCAGCAGCAGCCTCTCCTACGTCACGTATCCCGGCGACGAC GCCACGCCTCCGGTCCGCCTGTCCCGGGCCAACAGCTACACGGGCGTCTCCGCCTACCCGGATCGCAGCCGCGAC ACGCTCTATCCAGTGCCGTACATCTCCTATTCGCAGCCCGCCTCGCTCAAGGGGAAAGAAGCCGTGGTCAGGGGG GATGGCTACGACGCGCACCACCGAGCGAGCCCTACGTCGAGCAAAGGTTCGTAGCATCGGCCGCAACTCTCGGCG CCTTGCCGGGGCTGACCTGCATGCAGGCGAACCGTCGCCGTCGGGGAGCTCGAGCGGCTCCCAGGATGATCTGGA GATGAAGCCTTCGCGTGCGTCGACCCGTTGGCCGCTCCCCAGCCGGCCCCGAAGAACATCAGATGCCTCGGCTGA GCGCTGCGCGGCGGTGGCCAAGCCGGCCACGGTCAAGCCCCCGAGACCGTCGAGCTACGTCCGGGACTCGCGCCC TCCCCCCTCGATGCGGGGCTTCGCCTCGATCGCTCAGGTCGCTGCGCCTCCTCCACCTCTGCACCTTGGCGCCAT GGCCCACCCGGGTCCCTCAGCGGCCGCACCGCTCTCCGACCGGGGCAACGTGCGCAGATCGCCGCCCTCCCCCGG CGGCTCGACGCCTCGCCGGAACTCGGCCTCGTCCCTGCCCACCCTCACGTCCGCGTCTTCACGCCCGCCCGTCTC GATCCCAGGAACGCCCGCCTCCCCAACCGCGGTCCAGGCGGAGTACTTCTCCAGCTGGGCCTCGACCGTCCCGAA CACCGAATCGGACAAACGACGATCGTTCGAGGCGCCGATGACGACGTATGCGCCCGCTCAGCAGAGCCTGAGGGA GAGGAGGGCGCTGCGGGCGATGGGCGTTTCCGAGCTCGAGCGTATCGAATCCGCAGGCGGAGAGCCTCAACAGGA CTTTGTCCACGCCGAACGCAGTCGGATCCTGCCGCGCGCGGTGGCGCACGAGGATCTAGTCAACATATTTCCGGA GCCCGTGTCGCTGCCCGATCCGTCCGTCGGCAAAAGCAAGAAGAGCAAGAAAGGGGCAGGAGGGGGGAGGCTCGT CAAGAAAAGCCGATGGTCGGGGTTCAAGGCCGCAGCTGTGGTCGTATAG |