© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2335 |
| Gene name | |
| Location | Contig_1552:2186..3845 |
| Strand | - |
| Gene length (bp) | 1659 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05653 | Mg_trans_NIPA | Magnesium transporter NIPA | 1.8E-102 | 4 | 293 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q94AH3|NIPA4_ARATH | Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1 | 1 | 306 | 2.0E-95 |
| sp|Q9LNK7|NIPA3_ARATH | Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1 | 1 | 300 | 6.0E-94 |
| sp|F4JKQ7|NIPA5_ARATH | Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 SV=1 | 1 | 299 | 8.0E-88 |
| sp|Q8GYS1|NIPA7_ARATH | Probable magnesium transporter NIPA7 OS=Arabidopsis thaliana GN=At4g38730 PE=2 SV=1 | 1 | 299 | 4.0E-87 |
| sp|Q8GWX2|NIPA6_ARATH | Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana GN=At2g21120 PE=2 SV=1 | 1 | 310 | 8.0E-86 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q94AH3|NIPA4_ARATH | Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1 | 1 | 306 | 2.0E-95 |
| sp|Q9LNK7|NIPA3_ARATH | Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1 | 1 | 300 | 6.0E-94 |
| sp|F4JKQ7|NIPA5_ARATH | Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana GN=At4g09640 PE=2 SV=1 | 1 | 299 | 8.0E-88 |
| sp|Q8GYS1|NIPA7_ARATH | Probable magnesium transporter NIPA7 OS=Arabidopsis thaliana GN=At4g38730 PE=2 SV=1 | 1 | 299 | 4.0E-87 |
| sp|Q8GWX2|NIPA6_ARATH | Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana GN=At2g21120 PE=2 SV=1 | 1 | 310 | 8.0E-86 |
| sp|Q5R7Q3|NIPA2_PONAB | Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1 | 4 | 290 | 2.0E-85 |
| sp|Q8N8Q9|NIPA2_HUMAN | Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1 | 4 | 290 | 2.0E-85 |
| sp|Q3SWX0|NIPA2_BOVIN | Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1 | 4 | 290 | 8.0E-85 |
| sp|Q9JJC8|NIPA2_MOUSE | Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1 | 4 | 290 | 1.0E-84 |
| sp|B3LFA3|NIPA2_ARATH | Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 SV=1 | 1 | 314 | 1.0E-82 |
| sp|Q9LIR9|NIPA1_ARATH | Probable magnesium transporter NIPA1 OS=Arabidopsis thaliana GN=At3g23870 PE=2 SV=1 | 43 | 313 | 6.0E-80 |
| sp|Q8BZF2|NIPA4_MOUSE | Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1 | 6 | 290 | 2.0E-73 |
| sp|Q0D2K0|NIPA4_HUMAN | Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3 | 6 | 290 | 8.0E-71 |
| sp|Q8BMW7|NIPA3_MOUSE | Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2 | 2 | 290 | 4.0E-62 |
| sp|Q5RDB8|NIPA3_PONAB | Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1 | 2 | 306 | 2.0E-57 |
| sp|Q6NVV3|NIPA3_HUMAN | Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1 | 2 | 290 | 2.0E-56 |
| sp|Q7RTP0|NIPA1_HUMAN | Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1 | 7 | 301 | 7.0E-56 |
| sp|Q8BHK1|NIPA1_MOUSE | Magnesium transporter NIPA1 OS=Mus musculus GN=Nipa1 PE=1 SV=1 | 7 | 301 | 1.0E-55 |
| sp|Q9H841|NPAL2_HUMAN | NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1 | 8 | 293 | 1.0E-27 |
| sp|Q6P499|NPAL3_HUMAN | NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1 | 3 | 296 | 4.0E-25 |
| sp|Q5RD30|NPAL3_PONAB | NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1 | 3 | 293 | 4.0E-24 |
| sp|Q91WC7|NPAL2_MOUSE | NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1 | 8 | 293 | 1.0E-23 |
| sp|Q8BGN5|NPAL3_MOUSE | NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1 | 3 | 342 | 6.0E-22 |
| sp|Q8RWF4|NIPA8_ARATH | Probable magnesium transporter NIPA8 OS=Arabidopsis thaliana GN=At3g26670 PE=2 SV=1 | 14 | 300 | 2.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015693 | magnesium ion transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015095 | magnesium ion transmembrane transporter activity | Yes |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0030001 | metal ion transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006812 | cation transport | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.11 | 0.1177 | 0.0254 | 0.4083 | 0.0646 | 0.0011 | 0.2274 | 0.5899 | 0.5141 | 0.009 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 75 | 97 | 22 |
| 3 | 104 | 123 | 19 |
| 4 | 138 | 160 | 22 |
| 5 | 173 | 195 | 22 |
| 6 | 210 | 229 | 19 |
| 7 | 242 | 264 | 22 |
| 8 | 269 | 291 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4994 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2335 MIEDKYIGLALAMSSALAIGTSFVITKKGLMQAERRHGFEGDGFVYLRSPLWWAGIATLGIGEICNFAAYAFAPA ILVTPLGALSVLIGAVLGSYFLEEELGTLGKLGSAICLIGAVVIVLHAPPDEQIETIDQILHYAIQPGFLLYAIA VVAFAVFMIYKIAPVYGKKNALIYLSICSTVGSISVMSVKAFGIALKLTLAGNNQFSHPSTYVFMILTTVCILTQ MNYFNKALASFPTNIVNPLYYVTFTTATLCASFILFSGFNTTDPVNTLSLLCGFLVTFTGVYLLNLSRGDPNGNN LTAGRRGLDATPTDMVSSLQTRRSMQARRSGDPGRHSISSLHGDREGLIRAYDEEEAAGFGLTDLAGESDEDSRG AHNRLNGKTELNTNDIELEDRKSAER* |
| Coding | >Hirsu2|2335 ATGATCGAGGACAAATACATCGGCCTGGCGCTGGCCATGTCCTCAGCTTTGGCCATCGGCACCAGCTTCGTCATT ACCAAAAAGGGCTTGATGCAAGCCGAACGGCGGCACGGGTTTGAGGGCGATGGTTTCGTATACCTTAGGAGTCCA CTGTGGTGGGCAGGAATCGCTACGCTCGGCATCGGCGAGATCTGCAACTTCGCCGCCTACGCATTCGCGCCCGCC ATTCTCGTCACCCCTCTCGGAGCCCTCAGCGTTCTGATAGGCGCGGTGCTGGGGTCATATTTCCTGGAGGAAGAA CTGGGGACACTCGGGAAGCTGGGGAGCGCCATTTGCCTCATTGGCGCTGTTGTCATCGTCCTACACGCCCCCCCC GACGAGCAAATCGAGACCATTGACCAAATATTACACTACGCCATCCAACCAGGGTTTTTGCTTTACGCCATTGCC GTCGTCGCTTTTGCCGTCTTCATGATCTACAAGATTGCTCCTGTCTACGGCAAAAAGAACGCGCTCATTTACCTC TCGATCTGCTCGACCGTCGGCTCTATCTCCGTCATGTCTGTCAAAGCTTTCGGCATTGCGCTGAAACTGACTCTC GCCGGCAACAATCAGTTTTCGCACCCCTCGACCTACGTCTTCATGATCCTGACCACTGTCTGTATCCTGACGCAG ATGAATTACTTCAACAAAGCCCTGGCCTCTTTTCCGACAAACATCGTAAATCCCCTATACTACGTGACCTTCACC ACAGCCACCCTTTGCGCCTCCTTCATACTGTTCAGCGGCTTCAACACCACCGACCCCGTCAACACCCTTTCGCTA CTTTGCGGCTTCCTTGTGACATTTACCGGTGTCTACTTGCTCAATCTTTCCAGAGGCGACCCGAACGGAAATAAC CTCACCGCAGGGCGGAGAGGTCTGGACGCTACGCCCACCGACATGGTATCCAGCCTGCAGACTCGCCGCAGTATG CAAGCACGCAGGAGCGGCGATCCTGGGCGACACAGCATCAGCAGCCTTCATGGCGACAGGGAAGGGTTGATCCGG GCCTACGATGAGGAGGAGGCCGCCGGTTTCGGCCTCACGGACCTCGCGGGGGAGAGTGACGAGGATTCCCGCGGA GCACACAACCGTCTCAACGGCAAGACGGAACTTAACACCAACGATATCGAGCTGGAAGATCGAAAGTCCGCTGAG AGATAG |
| Transcript | >Hirsu2|2335 ATGATCGAGGACAAATACATCGGCCTGGCGCTGGCCATGTCCTCAGCTTTGGCCATCGGCACCAGCTTCGTCATT ACCAAAAAGGGCTTGATGCAAGCCGAACGGCGGCACGGGTTTGAGGGCGATGGTTTCGTATACCTTAGGAGTCCA CTGTGGTGGGCAGGAATCGCTACGCTCGGCATCGGCGAGATCTGCAACTTCGCCGCCTACGCATTCGCGCCCGCC ATTCTCGTCACCCCTCTCGGAGCCCTCAGCGTTCTGATAGGCGCGGTGCTGGGGTCATATTTCCTGGAGGAAGAA CTGGGGACACTCGGGAAGCTGGGGAGCGCCATTTGCCTCATTGGCGCTGTTGTCATCGTCCTACACGCCCCCCCC GACGAGCAAATCGAGACCATTGACCAAATATTACACTACGCCATCCAACCAGGGTTTTTGCTTTACGCCATTGCC GTCGTCGCTTTTGCCGTCTTCATGATCTACAAGATTGCTCCTGTCTACGGCAAAAAGAACGCGCTCATTTACCTC TCGATCTGCTCGACCGTCGGCTCTATCTCCGTCATGTCTGTCAAAGCTTTCGGCATTGCGCTGAAACTGACTCTC GCCGGCAACAATCAGTTTTCGCACCCCTCGACCTACGTCTTCATGATCCTGACCACTGTCTGTATCCTGACGCAG ATGAATTACTTCAACAAAGCCCTGGCCTCTTTTCCGACAAACATCGTAAATCCCCTATACTACGTGACCTTCACC ACAGCCACCCTTTGCGCCTCCTTCATACTGTTCAGCGGCTTCAACACCACCGACCCCGTCAACACCCTTTCGCTA CTTTGCGGCTTCCTTGTGACATTTACCGGTGTCTACTTGCTCAATCTTTCCAGAGGCGACCCGAACGGAAATAAC CTCACCGCAGGGCGGAGAGGTCTGGACGCTACGCCCACCGACATGGTATCCAGCCTGCAGACTCGCCGCAGTATG CAAGCACGCAGGAGCGGCGATCCTGGGCGACACAGCATCAGCAGCCTTCATGGCGACAGGGAAGGGTTGATCCGG GCCTACGATGAGGAGGAGGCCGCCGGTTTCGGCCTCACGGACCTCGCGGGGGAGAGTGACGAGGATTCCCGCGGA GCACACAACCGTCTCAACGGCAAGACGGAACTTAACACCAACGATATCGAGCTGGAAGATCGAAAGTCCGCTGAG AGATAG |
| Gene | >Hirsu2|2335 ATGATCGAGGACAAGTACGTTGCGCTTCCACCTGTTCTCGGATCCCGACTTCGTCCCATCCCGACTTCGTTACTG AATTTGCTGACGACGTGTGCGCTTTGCAGATACATCGGCCTGGCGCTGGCCATGTCCTCAGCTTTGGCCATCGGT ACGTTGTTTCCGCGCTGCCTTGGGTTTGTCGCTTCCTCATACCCTTCTGACAGAATGTTTCCAGGCACCAGCTTC GTCATTACCAAAAAGGTTCGTCGCCGCCTGCGCTCGATATGCTTCTCCTTGCACTCGTGTGCGCAGCGATCTACC GCTTCACCGTCCATACTGATGTCGCTCCCAGGGCTTGATGCAAGCCGAACGGCGGCACGGGTTTGAGGGCGATGG TTTCGTATACCTTAGGAGTCCACTGTGGTGGGCAGGAATCGCTACGCGTGAGCCTCGTCCCGTTGGCGATGCGAC CTGCTACCTCTCTTAACTGACGTCTTCCAGTCGGCATCGGCGAGATCTGCAACTTCGCCGCCTACGCATTCGCGC CCGCCATTCTCGTCACCCCTCTCGGAGCCCTCAGCGTTCTGATAGGCGCGGTGCTGGGGTCATATTTCCTGGAGG AAGAACTGGGGACACTCGGGAAGCTGGGGAGCGCCATTTGCCTCATTGGCGCTGTTGTCATCGTCCTACACGCCC CCCCCGACGAGCAAATCGAGACCATTGACCAAATATTACACTACGCCATCCAACCAGGTACGAAATTGGAACCCC GAAACCGAGCCGGCATCGTGTGGCCCTGACCTGTCCACCTCGTCTAGGGTTTTTGCTTTACGCCATTGCCGTCGT CGCTTTTGCCGTCTTCATGATCTACAAGATTGCTCCTGTCTACGGCAAAAAGAACGCGCTCATTTACCTCTCGAT CTGCTCGACCGTCGGCTCTATCTCCGTCATGTCTGTCAAAGCTTTCGGCATTGCGCTGAAACTGACTCTCGCCGG CAACAATCAGTTTTCGCACCCCTCGACCTACGTCTTCATGATCCTGACCACTGTCTGTATCCTGACGCAGATGAA TTACTTCAACAAAGCCCTGGCCTCTTTTCCGACAAACATGTCAGTCGCCCCGCGAGCTACCTACTCCTTTTGGAC CCTTGTCTCGTGCGCCTTCAAACCTGCTAACTGCTTGGACTTGGCAGCGTAAATCCCCTATACTACGTGACCTTC ACCACAGCCACCCTTTGCGCCTCCTTCATACTGTTCAGCGGCTTCAACACCACCGACCCCGTCAACACCCTTTCG CTACTTTGCGGCTTCCTTGTGACATTTACCGGTGTCTACTTGCTCAATCTTTCCAGAGGCGACCCGAACGGAAAT AACCTCACCGCAGGGCGGAGAGGTCTGGACGCTACGCCCACCGACATGGTATCCAGCCTGCAGACTCGCCGCAGT ATGCAAGCACGCAGGAGCGGCGATCCTGGGCGACACAGCATCAGCAGCCTTCATGGCGACAGGGAAGGGTTGATC CGGGCCTACGATGAGGAGGAGGCCGCCGGTTTCGGCCTCACGGACCTCGCGGGGGAGAGTGACGAGGATTCCCGC GGAGCACACAACCGTCTCAACGGCAAGACGGAACTTAACACCAACGATATCGAGCTGGAAGATCGAAAGTCCGCT GAGAGATAG |