Protein ID | Hirsu2|2318 |
Gene name | |
Location | Contig_1548:4474..5835 |
Strand | + |
Gene length (bp) | 1361 |
Transcript length (bp) | 903 |
Coding sequence length (bp) | 903 |
Protein length (aa) | 301 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11754 | Velvet | Velvet factor | 8.0E-18 | 100 | 167 |
PF11754 | Velvet | Velvet factor | 5.1E-34 | 173 | 291 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5631 | 0.6953 | 0.3628 | 0.0796 | 0.1762 | 0.0949 | 0.1227 | 0.2355 | 0.0645 | 0.1056 |
Orthofinder run ID | 4 |
Orthogroup | 2035 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2318 LPPAHALSFDDDDALPCDLVGLFSRRRASSRPAGRGVLHRQSASVQIPRPRPDPSPLTLLPIRRRAHDTMATPAS IPTNCSRESVQRIHRVTRENRNLWYQLTVLQQPERARACGSGMKANSDRRPVDPPPVVELRIIEGPSVEEGKDVT FDYNANFFLYASLEQARNIAHGRVQTPAASNPPILTGVPASGMAYLDRPAEAGYFIFPDLSVRHEGYFRLSFSLF ETTKEEKDFDLEPSDSDLPPGVDWRMEIKTQPFNVYSAKKFPGLMESTQLSKTVADQGCRVRIRRDTTTTRAAGP * |
Coding | >Hirsu2|2318 CTGCCGCCCGCGCATGCCCTCTCCTTCGACGACGACGACGCCCTGCCCTGCGACCTCGTAGGCCTCTTCTCTCGC CGCCGGGCCAGCAGCAGGCCGGCTGGCCGTGGCGTCCTCCATCGCCAGTCCGCCTCGGTGCAAATCCCTCGCCCA AGGCCCGATCCATCCCCTCTCACCCTGCTGCCCATCCGCCGCCGTGCCCACGACACAATGGCGACGCCCGCCTCC ATCCCGACCAACTGCTCGCGAGAGTCGGTCCAGCGCATCCACCGCGTCACCAGAGAAAACCGCAACCTCTGGTAT CAGTTGACCGTGCTCCAGCAGCCCGAGCGTGCCCGAGCATGCGGTTCCGGCATGAAAGCCAACAGCGACCGACGT CCGGTGGATCCCCCGCCCGTCGTGGAGCTCCGCATCATTGAGGGCCCCTCGGTGGAGGAGGGCAAGGACGTCACC TTCGACTACAATGCCAACTTCTTCCTCTACGCCAGCCTGGAGCAGGCCCGCAACATCGCTCACGGCCGCGTCCAG ACCCCCGCCGCCAGCAATCCGCCGATCCTGACGGGCGTCCCCGCCTCCGGCATGGCCTACCTCGACCGTCCGGCC GAGGCGGGCTACTTCATCTTCCCCGACCTCTCCGTCCGCCACGAGGGCTACTTCCGCCTGTCCTTCAGCCTGTTC GAGACGACCAAGGAGGAAAAGGACTTCGACCTCGAGCCGTCCGACAGCGATCTGCCGCCCGGCGTCGACTGGCGC ATGGAGATCAAGACGCAGCCCTTCAACGTCTACAGCGCCAAGAAGTTCCCCGGCCTGATGGAGAGCACCCAGCTG AGCAAGACGGTGGCCGACCAGGGCTGCCGCGTGCGCATCCGCCGCGACACGACGACTACCCGCGCCGCCGGACCG TGA |
Transcript | >Hirsu2|2318 CTGCCGCCCGCGCATGCCCTCTCCTTCGACGACGACGACGCCCTGCCCTGCGACCTCGTAGGCCTCTTCTCTCGC CGCCGGGCCAGCAGCAGGCCGGCTGGCCGTGGCGTCCTCCATCGCCAGTCCGCCTCGGTGCAAATCCCTCGCCCA AGGCCCGATCCATCCCCTCTCACCCTGCTGCCCATCCGCCGCCGTGCCCACGACACAATGGCGACGCCCGCCTCC ATCCCGACCAACTGCTCGCGAGAGTCGGTCCAGCGCATCCACCGCGTCACCAGAGAAAACCGCAACCTCTGGTAT CAGTTGACCGTGCTCCAGCAGCCCGAGCGTGCCCGAGCATGCGGTTCCGGCATGAAAGCCAACAGCGACCGACGT CCGGTGGATCCCCCGCCCGTCGTGGAGCTCCGCATCATTGAGGGCCCCTCGGTGGAGGAGGGCAAGGACGTCACC TTCGACTACAATGCCAACTTCTTCCTCTACGCCAGCCTGGAGCAGGCCCGCAACATCGCTCACGGCCGCGTCCAG ACCCCCGCCGCCAGCAATCCGCCGATCCTGACGGGCGTCCCCGCCTCCGGCATGGCCTACCTCGACCGTCCGGCC GAGGCGGGCTACTTCATCTTCCCCGACCTCTCCGTCCGCCACGAGGGCTACTTCCGCCTGTCCTTCAGCCTGTTC GAGACGACCAAGGAGGAAAAGGACTTCGACCTCGAGCCGTCCGACAGCGATCTGCCGCCCGGCGTCGACTGGCGC ATGGAGATCAAGACGCAGCCCTTCAACGTCTACAGCGCCAAGAAGTTCCCCGGCCTGATGGAGAGCACCCAGCTG AGCAAGACGGTGGCCGACCAGGGCTGCCGCGTGCGCATCCGCCGCGACACGACGACTACCCGCGCCGCCGGACCG TGA |
Gene | >Hirsu2|2318 CTGCCGCCCGCGCATGCCCTCTCCTTCGACGACGACGACGCCCTGCCCTGCGACCTCGTAGGCCTCTTCTCTCGC CGCCGGGCCAGCAGCAGGCCGGCTGGCCGTGGCGTCCTCCATCGCCAGTCCGCCTCGGTGCAAATCCCTCGCCCA AGGTGAGCCTCCCCGGCCCGGCCTCGTTGGCCCTCTGATCCTCTCCTCGCGCACCCGTCGACCGCCCGACCGGTC CGCCGCGCTTTTCCGCCCTCGTGGCCCGTCCTCGTCACGTCACTGCCGCCTCATCCTTTCCTCGTGCATCCTGCA CCGTCTTCATGCACGCCAAACGCTTCTTCAACGCCGGCCTTGTCGCTGACGCTCCGCTACCAGGCCCGATCCATC CCCTCTCACCCTGCTGCCCATCCGCCGCCGTGCCCACGACACAATGGCGACGCCCGCCTCCATCCCGACCAACTG CTCGCGAGAGTCGGTCCAGCGCATCCACCGCGTCACCAGAGAAAACCGCAACCTCTGGTATCAGTTGACCGTGCT CCAGCAGCCCGAGCGTGCCCGAGCATGCGGTTCCGGCATGAAAGGTGCGCACCGCCATCAATTCCCCTTTGCATC CCATCTGCCTCGCGGCCGTGCCGTCGCCGGCCCCTCCCTCTTTTTACTCTCCCCGTCGCCCTGCGCTCGCTGCGT GGCGGAACGACGTTGCCCGACGCCCTGCTGCCGTCGTCGCCGATGCCATCCATCGCCTCCCAGGTGACCTCGGAC GCTGACCTCTTCGACAGCCAACAGCGACCGACGTCCGGTGGATCCCCCGCCCGTCGTGGAGCTCCGCATCATTGA GGGCCCCTCGGTGGAGGAGGGCAAGGACGTCACCTTCGACTACAATGCCAACTTCTTCCTCTACGCCAGCCTGGA GCAGGCCCGCAACATCGCTCACGGCCGCGTCCAGACCCCCGCCGCCAGCAATCCGCCGATCCTGACGGGCGTCCC CGCCTCCGGCATGGCCTACCTCGACCGTCCGGCCGAGGCGGGCTACTTCATCTTCCCCGACCTCTCCGTCCGCCA CGAGGGCTACTTCCGCCTGTCCTTCAGCCTGTTCGAGACGACCAAGGAGGAAAAGGACTTCGACCTCGAGCCGTC CGACAGCGATCTGCCGCCCGGCGTCGACTGGCGCATGGAGATCAAGACGCAGCCCTTCAACGTCTACAGCGCCAA GAAGTTCCCCGGCCTGATGGAGAGCACCCAGCTGAGCAAGACGGTGGCCGACCAGGGCTGCCGCGTGCGCATCCG CCGCGACGTGCGCATGAGGAAACGCGACGGCAAATCGAGCGGCTACGACCGACGAGACGACGACTACCCGCGCCG CCGGACCGTGA |