© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2316 |
| Gene name | |
| Location | Contig_1547:3074..4712 |
| Strand | + |
| Gene length (bp) | 1638 |
| Transcript length (bp) | 1638 |
| Coding sequence length (bp) | 1638 |
| Protein length (aa) | 546 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01974 | tRNA_int_endo | tRNA intron endonuclease, catalytic C-terminal domain | 1.7E-17 | 418 | 507 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6Y2|SEN2_NEUCR | Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-2 PE=3 SV=1 | 174 | 545 | 4.0E-75 |
| sp|Q9P6Y2|SEN2_NEUCR | Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-2 PE=3 SV=1 | 1 | 209 | 2.0E-60 |
| sp|Q8TFH7|SEN2_SCHPO | Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen2 PE=3 SV=1 | 325 | 545 | 4.0E-27 |
| sp|Q5ZIN2|SEN2_CHICK | tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2 PE=2 SV=1 | 89 | 545 | 4.0E-26 |
| sp|Q5M954|SEN2_RAT | tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus GN=Tsen2 PE=1 SV=1 | 87 | 545 | 2.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6Y2|SEN2_NEUCR | Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-2 PE=3 SV=1 | 174 | 545 | 4.0E-75 |
| sp|Q9P6Y2|SEN2_NEUCR | Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tsp-2 PE=3 SV=1 | 1 | 209 | 2.0E-60 |
| sp|Q8TFH7|SEN2_SCHPO | Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen2 PE=3 SV=1 | 325 | 545 | 4.0E-27 |
| sp|Q5ZIN2|SEN2_CHICK | tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus GN=TSEN2 PE=2 SV=1 | 89 | 545 | 4.0E-26 |
| sp|Q5M954|SEN2_RAT | tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus GN=Tsen2 PE=1 SV=1 | 87 | 545 | 2.0E-23 |
| sp|Q6P7W5|SEN2_MOUSE | tRNA-splicing endonuclease subunit Sen2 OS=Mus musculus GN=Tsen2 PE=1 SV=1 | 356 | 545 | 5.0E-22 |
| sp|Q8NCE0|SEN2_HUMAN | tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens GN=TSEN2 PE=1 SV=2 | 356 | 545 | 2.0E-21 |
| sp|Q74ZY5|SEN2_ASHGO | tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN2 PE=3 SV=2 | 345 | 545 | 8.0E-21 |
| sp|P16658|SEN2_YEAST | tRNA-splicing endonuclease subunit SEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN2 PE=1 SV=1 | 348 | 545 | 3.0E-19 |
| sp|Q9M1E8|SEN21_ARATH | tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1 | 309 | 540 | 1.0E-18 |
| sp|Q9LSS3|SEN22_ARATH | tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1 | 358 | 540 | 6.0E-13 |
| sp|Q8TFH7|SEN2_SCHPO | Probable tRNA-splicing endonuclease subunit sen2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen2 PE=3 SV=1 | 31 | 160 | 4.0E-11 |
| sp|P16658|SEN2_YEAST | tRNA-splicing endonuclease subunit SEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN2 PE=1 SV=1 | 26 | 165 | 5.0E-11 |
| sp|Q5Z6B1|SEN2_ORYSJ | Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica GN=Os06g0530700 PE=2 SV=1 | 358 | 545 | 2.0E-10 |
| sp|Q74ZY5|SEN2_ASHGO | tRNA-splicing endonuclease subunit SEN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN2 PE=3 SV=2 | 34 | 171 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000213 | tRNA-intron endonuclease activity | Yes |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | Yes |
| GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0004519 | endonuclease activity | No |
| GO:0140101 | catalytic activity, acting on a tRNA | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0004521 | endoribonuclease activity | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0004518 | nuclease activity | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0004549 | tRNA-specific ribonuclease activity | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0003674 | molecular_function | No |
| GO:0004540 | ribonuclease activity | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0034470 | ncRNA processing | No |
| GO:0008380 | RNA splicing | No |
| GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.4925 | 0.4524 | 0.0417 | 0.0055 | 0.3127 | 0.0338 | 0.3962 | 0.0938 | 0.2408 | 0.1091 |
| Orthofinder run ID | 4 |
| Orthogroup | 218 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2316 MADINAPSQAPVPGGKAASASPGSRRGPSIHQIYALPAPIRTFPLPTFYPDNPLSLFHVASAWLRQLFSPPPAEP ALIHRGIWSPGSMSVHVTDEKSMRALWEQGFYGKGNLSRSEPNWLKREQVRRGLQDVHVSEILTVRRREDRAQAK WERARLEQQAIMATKLEEARQHHAQPCPAPPVGPPQLLALPNSDVELSDMIRSAASASSKTTEAAWGKPDLEGTT SFHFNHAERPVNHDLILVEVLDDEAHPHVAETPALPSGDGQDAQATKPGEVSSDSADGKTLKRQKSVRFSPKVES TTFQLSDPPSPNHSSAAGNANAQPEAKSLDGWAARPLPDSSHGQVAADPGIIVNREHLQLMPEEAFFLSFGLGAL GVCDPASGRPLSTREMFTLFRQYSYFPPRIGPEEPDLGPDDRFLVHYAVYHHFRSLGWVPRAGIKFGVDWLLYTR GPVFDHAEFGLVVIPSYSDEWWKRAGKRQEPKTWAWLHGNVRVLSHATKSLVLVYVDVPPPPRFEEAERAGITEA LKLYTVREVTVKRWSSNRNR* |
| Coding | >Hirsu2|2316 ATGGCTGACATCAACGCTCCATCTCAAGCGCCTGTCCCGGGAGGAAAAGCAGCCTCGGCATCGCCTGGCTCGAGA CGCGGGCCTTCGATCCACCAGATTTACGCTCTCCCCGCCCCCATCCGAACCTTCCCCCTCCCGACCTTCTATCCC GACAACCCCTTGTCCCTCTTCCACGTCGCATCCGCATGGCTGAGACAGCTGTTCTCGCCGCCCCCCGCCGAGCCG GCCCTCATCCACCGGGGGATCTGGTCCCCCGGCTCCATGTCTGTCCACGTTACCGATGAAAAATCCATGAGGGCC CTCTGGGAGCAAGGCTTCTACGGCAAAGGCAACCTGAGTCGCAGCGAGCCCAACTGGCTCAAGCGCGAGCAGGTC CGGAGAGGCCTCCAGGATGTCCACGTCAGTGAAATCTTGACCGTCCGGAGGCGCGAGGACCGCGCCCAGGCCAAG TGGGAGCGAGCAAGGCTGGAACAGCAGGCCATCATGGCCACAAAGCTGGAGGAGGCGCGACAGCACCACGCCCAG CCGTGCCCTGCCCCGCCAGTTGGGCCGCCGCAACTACTCGCGCTTCCCAACTCAGATGTCGAGCTTTCCGACATG ATACGATCGGCTGCATCGGCCTCTTCGAAGACTACAGAGGCAGCCTGGGGGAAACCCGACTTGGAGGGGACCACG TCTTTCCACTTCAACCATGCCGAACGCCCTGTCAACCACGACTTGATACTTGTCGAGGTGCTGGACGACGAGGCG CACCCGCACGTCGCCGAGACGCCCGCGCTGCCCAGCGGAGACGGCCAGGACGCCCAGGCGACCAAGCCCGGGGAG GTCTCAAGCGACTCGGCAGATGGCAAGACGCTGAAGCGGCAGAAGAGCGTTCGCTTCTCTCCCAAGGTGGAGTCG ACCACCTTTCAGCTCTCGGATCCACCAAGCCCGAACCACTCGTCGGCGGCCGGAAATGCCAATGCGCAGCCCGAG GCCAAGAGCCTGGACGGCTGGGCCGCTCGCCCGCTTCCGGACTCGAGCCATGGCCAAGTGGCTGCCGATCCCGGG ATCATCGTCAACAGGGAGCACCTGCAGCTGATGCCCGAAGAGGCCTTCTTTCTGAGCTTCGGGCTGGGCGCCCTC GGCGTGTGCGACCCCGCATCCGGCAGGCCGCTGTCGACGAGAGAGATGTTCACCCTGTTCCGCCAATACTCGTAT TTCCCGCCGCGAATCGGGCCGGAGGAGCCGGACCTAGGCCCGGACGACCGATTTCTCGTCCACTACGCCGTGTAT CACCACTTCCGCTCGCTCGGCTGGGTGCCCCGAGCCGGCATCAAGTTTGGCGTCGACTGGCTGCTGTACACGCGC GGGCCCGTGTTTGATCACGCCGAGTTCGGCCTCGTCGTCATCCCGTCCTACTCGGACGAGTGGTGGAAGCGAGCG GGCAAGCGGCAGGAGCCCAAGACGTGGGCCTGGCTCCACGGCAATGTGCGGGTCTTGTCGCACGCGACGAAGAGC CTGGTGCTCGTGTACGTAGACGTGCCGCCGCCGCCGCGGTTCGAAGAGGCGGAGAGGGCGGGCATCACGGAGGCG TTGAAGCTTTACACGGTCCGCGAGGTGACAGTGAAGCGATGGTCGAGCAATCGCAACCGGTAG |
| Transcript | >Hirsu2|2316 ATGGCTGACATCAACGCTCCATCTCAAGCGCCTGTCCCGGGAGGAAAAGCAGCCTCGGCATCGCCTGGCTCGAGA CGCGGGCCTTCGATCCACCAGATTTACGCTCTCCCCGCCCCCATCCGAACCTTCCCCCTCCCGACCTTCTATCCC GACAACCCCTTGTCCCTCTTCCACGTCGCATCCGCATGGCTGAGACAGCTGTTCTCGCCGCCCCCCGCCGAGCCG GCCCTCATCCACCGGGGGATCTGGTCCCCCGGCTCCATGTCTGTCCACGTTACCGATGAAAAATCCATGAGGGCC CTCTGGGAGCAAGGCTTCTACGGCAAAGGCAACCTGAGTCGCAGCGAGCCCAACTGGCTCAAGCGCGAGCAGGTC CGGAGAGGCCTCCAGGATGTCCACGTCAGTGAAATCTTGACCGTCCGGAGGCGCGAGGACCGCGCCCAGGCCAAG TGGGAGCGAGCAAGGCTGGAACAGCAGGCCATCATGGCCACAAAGCTGGAGGAGGCGCGACAGCACCACGCCCAG CCGTGCCCTGCCCCGCCAGTTGGGCCGCCGCAACTACTCGCGCTTCCCAACTCAGATGTCGAGCTTTCCGACATG ATACGATCGGCTGCATCGGCCTCTTCGAAGACTACAGAGGCAGCCTGGGGGAAACCCGACTTGGAGGGGACCACG TCTTTCCACTTCAACCATGCCGAACGCCCTGTCAACCACGACTTGATACTTGTCGAGGTGCTGGACGACGAGGCG CACCCGCACGTCGCCGAGACGCCCGCGCTGCCCAGCGGAGACGGCCAGGACGCCCAGGCGACCAAGCCCGGGGAG GTCTCAAGCGACTCGGCAGATGGCAAGACGCTGAAGCGGCAGAAGAGCGTTCGCTTCTCTCCCAAGGTGGAGTCG ACCACCTTTCAGCTCTCGGATCCACCAAGCCCGAACCACTCGTCGGCGGCCGGAAATGCCAATGCGCAGCCCGAG GCCAAGAGCCTGGACGGCTGGGCCGCTCGCCCGCTTCCGGACTCGAGCCATGGCCAAGTGGCTGCCGATCCCGGG ATCATCGTCAACAGGGAGCACCTGCAGCTGATGCCCGAAGAGGCCTTCTTTCTGAGCTTCGGGCTGGGCGCCCTC GGCGTGTGCGACCCCGCATCCGGCAGGCCGCTGTCGACGAGAGAGATGTTCACCCTGTTCCGCCAATACTCGTAT TTCCCGCCGCGAATCGGGCCGGAGGAGCCGGACCTAGGCCCGGACGACCGATTTCTCGTCCACTACGCCGTGTAT CACCACTTCCGCTCGCTCGGCTGGGTGCCCCGAGCCGGCATCAAGTTTGGCGTCGACTGGCTGCTGTACACGCGC GGGCCCGTGTTTGATCACGCCGAGTTCGGCCTCGTCGTCATCCCGTCCTACTCGGACGAGTGGTGGAAGCGAGCG GGCAAGCGGCAGGAGCCCAAGACGTGGGCCTGGCTCCACGGCAATGTGCGGGTCTTGTCGCACGCGACGAAGAGC CTGGTGCTCGTGTACGTAGACGTGCCGCCGCCGCCGCGGTTCGAAGAGGCGGAGAGGGCGGGCATCACGGAGGCG TTGAAGCTTTACACGGTCCGCGAGGTGACAGTGAAGCGATGGTCGAGCAATCGCAACCGGTAG |
| Gene | >Hirsu2|2316 ATGGCTGACATCAACGCTCCATCTCAAGCGCCTGTCCCGGGAGGAAAAGCAGCCTCGGCATCGCCTGGCTCGAGA CGCGGGCCTTCGATCCACCAGATTTACGCTCTCCCCGCCCCCATCCGAACCTTCCCCCTCCCGACCTTCTATCCC GACAACCCCTTGTCCCTCTTCCACGTCGCATCCGCATGGCTGAGACAGCTGTTCTCGCCGCCCCCCGCCGAGCCG GCCCTCATCCACCGGGGGATCTGGTCCCCCGGCTCCATGTCTGTCCACGTTACCGATGAAAAATCCATGAGGGCC CTCTGGGAGCAAGGCTTCTACGGCAAAGGCAACCTGAGTCGCAGCGAGCCCAACTGGCTCAAGCGCGAGCAGGTC CGGAGAGGCCTCCAGGATGTCCACGTCAGTGAAATCTTGACCGTCCGGAGGCGCGAGGACCGCGCCCAGGCCAAG TGGGAGCGAGCAAGGCTGGAACAGCAGGCCATCATGGCCACAAAGCTGGAGGAGGCGCGACAGCACCACGCCCAG CCGTGCCCTGCCCCGCCAGTTGGGCCGCCGCAACTACTCGCGCTTCCCAACTCAGATGTCGAGCTTTCCGACATG ATACGATCGGCTGCATCGGCCTCTTCGAAGACTACAGAGGCAGCCTGGGGGAAACCCGACTTGGAGGGGACCACG TCTTTCCACTTCAACCATGCCGAACGCCCTGTCAACCACGACTTGATACTTGTCGAGGTGCTGGACGACGAGGCG CACCCGCACGTCGCCGAGACGCCCGCGCTGCCCAGCGGAGACGGCCAGGACGCCCAGGCGACCAAGCCCGGGGAG GTCTCAAGCGACTCGGCAGATGGCAAGACGCTGAAGCGGCAGAAGAGCGTTCGCTTCTCTCCCAAGGTGGAGTCG ACCACCTTTCAGCTCTCGGATCCACCAAGCCCGAACCACTCGTCGGCGGCCGGAAATGCCAATGCGCAGCCCGAG GCCAAGAGCCTGGACGGCTGGGCCGCTCGCCCGCTTCCGGACTCGAGCCATGGCCAAGTGGCTGCCGATCCCGGG ATCATCGTCAACAGGGAGCACCTGCAGCTGATGCCCGAAGAGGCCTTCTTTCTGAGCTTCGGGCTGGGCGCCCTC GGCGTGTGCGACCCCGCATCCGGCAGGCCGCTGTCGACGAGAGAGATGTTCACCCTGTTCCGCCAATACTCGTAT TTCCCGCCGCGAATCGGGCCGGAGGAGCCGGACCTAGGCCCGGACGACCGATTTCTCGTCCACTACGCCGTGTAT CACCACTTCCGCTCGCTCGGCTGGGTGCCCCGAGCCGGCATCAAGTTTGGCGTCGACTGGCTGCTGTACACGCGC GGGCCCGTGTTTGATCACGCCGAGTTCGGCCTCGTCGTCATCCCGTCCTACTCGGACGAGTGGTGGAAGCGAGCG GGCAAGCGGCAGGAGCCCAAGACGTGGGCCTGGCTCCACGGCAATGTGCGGGTCTTGTCGCACGCGACGAAGAGC CTGGTGCTCGTGTACGTAGACGTGCCGCCGCCGCCGCGGTTCGAAGAGGCGGAGAGGGCGGGCATCACGGAGGCG TTGAAGCTTTACACGGTCCGCGAGGTGACAGTGAAGCGATGGTCGAGCAATCGCAACCGGTAG |