© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2311 |
| Gene name | |
| Location | Contig_1545:4382..5592 |
| Strand | - |
| Gene length (bp) | 1210 |
| Transcript length (bp) | 933 |
| Coding sequence length (bp) | 933 |
| Protein length (aa) | 311 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-19 | 72 | 141 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10422|YDC1_SCHPO | Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1 | 63 | 197 | 7.0E-27 |
| sp|P62997|TRA2B_RAT | Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|P62996|TRA2B_MOUSE | Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|P62995|TRA2B_HUMAN | Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|Q3ZBT6|TRA2B_BOVIN | Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 | 67 | 210 | 1.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10422|YDC1_SCHPO | Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1 | 63 | 197 | 7.0E-27 |
| sp|P62997|TRA2B_RAT | Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|P62996|TRA2B_MOUSE | Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|P62995|TRA2B_HUMAN | Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 | 67 | 210 | 1.0E-14 |
| sp|Q3ZBT6|TRA2B_BOVIN | Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 | 67 | 210 | 1.0E-14 |
| sp|Q84TH4|SR45A_ARATH | Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1 | 65 | 161 | 6.0E-14 |
| sp|P19018|TRA2_DROME | Transformer-2 sex-determining protein OS=Drosophila melanogaster GN=tra2 PE=1 SV=1 | 74 | 203 | 1.0E-13 |
| sp|O02008|TRA2_DROVI | Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2 PE=3 SV=1 | 74 | 165 | 4.0E-13 |
| sp|Q8N7X1|RMXL3_HUMAN | RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens GN=RBMXL3 PE=2 SV=2 | 72 | 178 | 4.0E-12 |
| sp|P0C8Z4|RMXL3_PANTR | RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=3 SV=1 | 72 | 178 | 1.0E-11 |
| sp|Q54Y98|TRA2_DICDI | Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2 PE=3 SV=1 | 65 | 175 | 3.0E-11 |
| sp|Q6IRQ4|RBMX_XENLA | RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx PE=2 SV=1 | 72 | 170 | 3.0E-11 |
| sp|Q9DED4|CIRBB_XENLA | Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1 | 72 | 149 | 4.0E-11 |
| sp|Q28IQ9|CIRBP_XENTR | Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 | 72 | 149 | 1.0E-10 |
| sp|Q5RF83|CIRBP_PONAB | Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 | 72 | 149 | 5.0E-10 |
| sp|Q14011|CIRBP_HUMAN | Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 | 72 | 149 | 5.0E-10 |
| sp|P98179|RBM3_HUMAN | RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 | 72 | 149 | 6.0E-10 |
| sp|Q9PTX2|CIRBP_LITCT | Cold-inducible RNA-binding protein OS=Lithobates catesbeiana GN=cirbp PE=2 SV=1 | 72 | 149 | 6.0E-10 |
| sp|Q13595|TRA2A_HUMAN | Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 | 67 | 207 | 7.0E-10 |
| sp|Q60899|ELAV2_MOUSE | ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 | 42 | 218 | 7.0E-10 |
| sp|P60825|CIRBP_RAT | Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 | 72 | 149 | 7.0E-10 |
| sp|P60824|CIRBP_MOUSE | Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 | 72 | 149 | 7.0E-10 |
| sp|P60826|CIRBP_CRIGR | Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 | 72 | 149 | 7.0E-10 |
| sp|Q5R9Z6|ELAV2_PONAB | ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 | 42 | 218 | 8.0E-10 |
| sp|Q12926|ELAV2_HUMAN | ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 | 42 | 218 | 8.0E-10 |
| sp|Q4V898|RBMX_RAT | RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1 | 72 | 148 | 8.0E-10 |
| sp|Q91VM5|RMXL1_MOUSE | RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1 | 72 | 148 | 8.0E-10 |
| sp|Q6PFR5|TRA2A_MOUSE | Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 | 67 | 207 | 8.0E-10 |
| sp|Q4R7F0|RBMX_MACFA | RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1 | 72 | 148 | 8.0E-10 |
| sp|A5A6M3|RBMX_PANTR | RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1 | 72 | 148 | 9.0E-10 |
| sp|P38159|RBMX_HUMAN | RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX PE=1 SV=3 | 72 | 148 | 9.0E-10 |
| sp|Q8RWN5|RZ1C_ARATH | Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1 | 65 | 146 | 1.0E-09 |
| sp|Q9WV02|RBMX_MOUSE | RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1 | 72 | 148 | 1.0E-09 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 72 | 186 | 3.0E-09 |
| sp|P84586|RMXRL_RAT | RNA-binding motif protein, X chromosome retrogene-like OS=Rattus norvegicus GN=Rbmxrtl PE=1 SV=1 | 72 | 148 | 3.0E-09 |
| sp|Q28GD4|ELAV2_XENTR | ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 | 41 | 218 | 3.0E-09 |
| sp|Q7ZWA3|RBMX_DANRE | RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2 SV=1 | 72 | 148 | 3.0E-09 |
| sp|O93235|CIRBA_XENLA | Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2 | 72 | 149 | 3.0E-09 |
| sp|Q4R813|RMXL2_MACFA | RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1 | 71 | 148 | 4.0E-09 |
| sp|Q96E39|RMXL1_HUMAN | RNA binding motif protein, X-linked-like-1 OS=Homo sapiens GN=RBMXL1 PE=1 SV=1 | 72 | 148 | 5.0E-09 |
| sp|D4AE41|RMXL1_RAT | RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus GN=Rbmxl1 PE=3 SV=1 | 72 | 148 | 5.0E-09 |
| sp|Q29RT0|RBMX_BOVIN | RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 | 71 | 148 | 8.0E-09 |
| sp|O75526|RMXL2_HUMAN | RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3 | 71 | 148 | 8.0E-09 |
| sp|Q9WX37|RBPE_NOSS1 | Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 | 71 | 147 | 9.0E-09 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 70 | 148 | 9.0E-09 |
| sp|Q80YR5|SAFB2_MOUSE | Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2 | 24 | 147 | 9.0E-09 |
| sp|Q9V535|RBM8A_DROME | RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1 | 58 | 152 | 1.0E-08 |
| sp|P17130|ROA1_XENLA | Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1 | 72 | 164 | 1.0E-08 |
| sp|P49314|ROC2_NICPL | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 72 | 186 | 1.0E-08 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 46 | 143 | 1.0E-08 |
| sp|A5A6H4|ROA1_PANTR | Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1 | 72 | 164 | 1.0E-08 |
| sp|P49312|ROA1_MOUSE | Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2 | 72 | 164 | 1.0E-08 |
| sp|P09867|ROA1_BOVIN | Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2 | 72 | 164 | 1.0E-08 |
| sp|P04256|ROA1_RAT | Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3 | 72 | 164 | 1.0E-08 |
| sp|Q91903|ELAV2_XENLA | ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2 | 43 | 218 | 1.0E-08 |
| sp|O22703|RZ1B_ARATH | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 | 67 | 146 | 1.0E-08 |
| sp|Q28521|ROA1_MACMU | Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3 | 72 | 164 | 2.0E-08 |
| sp|Q8CH84|ELAV2_RAT | ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=1 SV=1 | 42 | 218 | 2.0E-08 |
| sp|P09651|ROA1_HUMAN | Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5 | 72 | 164 | 2.0E-08 |
| sp|Q04836|CP31A_ARATH | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 | 70 | 151 | 2.0E-08 |
| sp|Q32P51|RA1L2_HUMAN | Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2 | 72 | 164 | 2.0E-08 |
| sp|P28644|ROC1_SPIOL | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 70 | 200 | 2.0E-08 |
| sp|P30352|SRSF2_CHICK | Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1 | 70 | 151 | 2.0E-08 |
| sp|Q60990|RBY1B_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=3 | 72 | 148 | 3.0E-08 |
| sp|A4QUF0|PABP_MAGO7 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=PAB1 PE=3 SV=1 | 70 | 152 | 4.0E-08 |
| sp|A6NDE4|RBY1B_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo sapiens GN=RBMY1B PE=2 SV=2 | 65 | 148 | 4.0E-08 |
| sp|P0C7P1|RBY1D_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo sapiens GN=RBMY1D PE=2 SV=1 | 65 | 148 | 5.0E-08 |
| sp|P0DJD3|RBY1A_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1 | 65 | 148 | 5.0E-08 |
| sp|Q8LPQ9|FPA_ARATH | Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2 | 70 | 151 | 5.0E-08 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 59 | 143 | 5.0E-08 |
| sp|A6NEQ0|RBY1E_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo sapiens GN=RBMY1E PE=2 SV=1 | 65 | 148 | 5.0E-08 |
| sp|Q14151|SAFB2_HUMAN | Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1 | 61 | 147 | 5.0E-08 |
| sp|P0DJD4|RBY1C_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo sapiens GN=RBMY1C PE=1 SV=1 | 65 | 148 | 6.0E-08 |
| sp|Q15415|RBY1F_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member F/J OS=Homo sapiens GN=RBMY1F PE=1 SV=2 | 65 | 148 | 6.0E-08 |
| sp|P19683|ROC4_NICSY | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 86 | 200 | 6.0E-08 |
| sp|Q3SWU3|HNRDL_RAT | Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrnpdl PE=1 SV=1 | 23 | 160 | 8.0E-08 |
| sp|O09032|ELAV4_RAT | ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 | 42 | 218 | 8.0E-08 |
| sp|Q61701|ELAV4_MOUSE | ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 | 42 | 218 | 8.0E-08 |
| sp|Q06A98|SRSF2_PIG | Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1 | 70 | 151 | 1.0E-07 |
| sp|P51990|RO22_XENLA | Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1 | 72 | 164 | 1.0E-07 |
| sp|P16914|ELAV_DROME | Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1 | 72 | 144 | 1.0E-07 |
| sp|O88453|SAFB1_RAT | Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1 SV=2 | 24 | 147 | 1.0E-07 |
| sp|Q6PDU1|SRSF2_RAT | Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3 | 70 | 151 | 1.0E-07 |
| sp|Q62093|SRSF2_MOUSE | Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2 PE=1 SV=4 | 70 | 151 | 1.0E-07 |
| sp|Q01130|SRSF2_HUMAN | Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4 | 70 | 151 | 1.0E-07 |
| sp|Q3MHR5|SRSF2_BOVIN | Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2 SV=3 | 70 | 151 | 1.0E-07 |
| sp|Q57014|RBPA_SYNY3 | Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rbpA PE=3 SV=3 | 71 | 147 | 1.0E-07 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 66 | 143 | 1.0E-07 |
| sp|Q9BRL6|SRSF8_HUMAN | Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8 PE=1 SV=1 | 61 | 147 | 1.0E-07 |
| sp|P23241|ELAV_DROVI | Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1 | 72 | 144 | 1.0E-07 |
| sp|Q5D018|RBM8A_DANRE | RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 | 69 | 146 | 1.0E-07 |
| sp|Q5R1W5|SRSF2_PANTR | Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2 PE=2 SV=3 | 70 | 151 | 1.0E-07 |
| sp|Q9CAE4|U1131_ARATH | U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1 | 70 | 146 | 2.0E-07 |
| sp|P26378|ELAV4_HUMAN | ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2 | 47 | 218 | 2.0E-07 |
| sp|Q1DXH0|PABP_COCIM | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1 | 70 | 152 | 2.0E-07 |
| sp|D3YXK2|SAFB1_MOUSE | Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2 | 24 | 147 | 2.0E-07 |
| sp|P51968|RO31_XENLA | Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1 | 72 | 164 | 2.0E-07 |
| sp|Q43472|GRP_HORVU | Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1 | 72 | 151 | 3.0E-07 |
| sp|Q09511|RSP4_CAEEL | Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1 | 66 | 151 | 3.0E-07 |
| sp|P51989|RO21_XENLA | Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1 | 72 | 164 | 3.0E-07 |
| sp|A1CRM1|PABP_ASPCL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1 | 70 | 152 | 3.0E-07 |
| sp|Q9TTV2|ROA2_SAGOE | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1 | 72 | 164 | 3.0E-07 |
| sp|Q28FX0|ELAV3_XENTR | ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1 | 70 | 149 | 4.0E-07 |
| sp|Q9FNR1|RBG3_ARATH | Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 | 70 | 147 | 4.0E-07 |
| sp|O35698|RBY1A_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2 | 72 | 148 | 4.0E-07 |
| sp|B5DGI7|RBM8A_SALSA | RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 | 69 | 143 | 4.0E-07 |
| sp|P51991|ROA3_HUMAN | Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2 | 72 | 160 | 4.0E-07 |
| sp|Q6URK4|ROA3_RAT | Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1 | 72 | 160 | 4.0E-07 |
| sp|Q8BG05|ROA3_MOUSE | Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1 | 72 | 160 | 4.0E-07 |
| sp|Q9CWZ3|RBM8A_MOUSE | RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3 | 69 | 146 | 4.0E-07 |
| sp|Q27W01|RBM8A_RAT | RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=1 SV=1 | 69 | 146 | 4.0E-07 |
| sp|Q9Y5S9|RBM8A_HUMAN | RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1 | 69 | 146 | 4.0E-07 |
| sp|Q3ZCE8|RBM8A_BOVIN | RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2 | 69 | 146 | 4.0E-07 |
| sp|Q91584|ELAV3_XENLA | ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1 | 70 | 149 | 4.0E-07 |
| sp|Q9LIN3|RZ1A_ARATH | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1 | 67 | 147 | 4.0E-07 |
| sp|Q05196|PABP5_ARATH | Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3 | 61 | 148 | 4.0E-07 |
| sp|A1D4K4|PABP_NEOFI | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1 | 70 | 152 | 5.0E-07 |
| sp|Q4WK03|PABP_ASPFU | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1 | 70 | 152 | 5.0E-07 |
| sp|P51992|RO32_XENLA | Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1 | 72 | 164 | 5.0E-07 |
| sp|Q15427|SF3B4_HUMAN | Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1 | 53 | 148 | 5.0E-07 |
| sp|Q14576|ELAV3_HUMAN | ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3 | 70 | 218 | 5.0E-07 |
| sp|Q15424|SAFB1_HUMAN | Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4 | 69 | 147 | 6.0E-07 |
| sp|Q2HJ60|ROA2_BOVIN | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1 | 72 | 164 | 6.0E-07 |
| sp|Q5R452|SAFB1_PONAB | Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1 | 69 | 147 | 6.0E-07 |
| sp|Q6AYL5|SF3B4_RAT | Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1 | 53 | 148 | 6.0E-07 |
| sp|Q8QZY9|SF3B4_MOUSE | Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1 | 53 | 148 | 6.0E-07 |
| sp|Q99069|GRP1_SORBI | Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1 | 90 | 147 | 6.0E-07 |
| sp|O09032|ELAV4_RAT | ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 | 37 | 149 | 7.0E-07 |
| sp|Q0CR95|PABP_ASPTN | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1 | 70 | 152 | 7.0E-07 |
| sp|A7VJC2|ROA2_RAT | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1 | 72 | 164 | 7.0E-07 |
| sp|O88569|ROA2_MOUSE | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2 | 72 | 164 | 8.0E-07 |
| sp|P22626|ROA2_HUMAN | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2 | 72 | 164 | 8.0E-07 |
| sp|Q5RBU8|ROA2_PONAB | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1 | 72 | 164 | 8.0E-07 |
| sp|Q61701|ELAV4_MOUSE | ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 | 37 | 149 | 9.0E-07 |
| sp|Q60900|ELAV3_MOUSE | ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1 | 70 | 218 | 9.0E-07 |
| sp|P26378|ELAV4_HUMAN | ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2 | 37 | 149 | 1.0E-06 |
| sp|Q9FGS0|CP31B_ARATH | RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 | 72 | 151 | 1.0E-06 |
| sp|Q5B630|PABP_EMENI | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2 | 70 | 152 | 2.0E-06 |
| sp|Q5ZI72|HNRDL_CHICK | Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRNPDL PE=2 SV=1 | 53 | 160 | 2.0E-06 |
| sp|Q9SEU4|SRC33_ARATH | Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1 | 70 | 150 | 2.0E-06 |
| sp|Q96DH6|MSI2H_HUMAN | RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1 | 56 | 155 | 2.0E-06 |
| sp|Q28BZ1|RBM8A_XENTR | RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 | 69 | 144 | 2.0E-06 |
| sp|Q920Q6|MSI2H_MOUSE | RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1 | 56 | 155 | 2.0E-06 |
| sp|Q43349|CP29A_ARATH | 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2 | 65 | 143 | 2.0E-06 |
| sp|Q8N6W0|CELF5_HUMAN | CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1 | 69 | 154 | 3.0E-06 |
| sp|Q6PH90|RB8AB_XENLA | RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 | 69 | 144 | 3.0E-06 |
| sp|Q9FXA2|PABP8_ARATH | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 | 69 | 148 | 3.0E-06 |
| sp|Q00916|RU17_YEAST | U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1 SV=1 | 33 | 147 | 3.0E-06 |
| sp|Q7JGR2|PABP5_MACMU | Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 | 70 | 153 | 3.0E-06 |
| sp|P60050|PABP5_PONPY | Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 | 70 | 153 | 3.0E-06 |
| sp|P60049|PABP5_PANTR | Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 | 70 | 153 | 3.0E-06 |
| sp|P60048|PABP5_HYLLA | Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 | 70 | 153 | 3.0E-06 |
| sp|Q96DU9|PABP5_HUMAN | Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 | 70 | 153 | 3.0E-06 |
| sp|P60047|PABP5_GORGO | Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 | 70 | 153 | 3.0E-06 |
| sp|Q05196|PABP5_ARATH | Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3 | 69 | 148 | 4.0E-06 |
| sp|Q9DF42|RB8AA_XENLA | RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 | 69 | 144 | 4.0E-06 |
| sp|Q9WX39|RBPF_NOSS1 | Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpF PE=3 SV=3 | 71 | 147 | 4.0E-06 |
| sp|Q9FMG4|SC35_ARATH | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1 | 71 | 147 | 4.0E-06 |
| sp|P21522|ROA1_SCHAM | Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1 | 54 | 153 | 4.0E-06 |
| sp|Q44554|RBPB_NOSS1 | Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpB PE=3 SV=3 | 71 | 147 | 4.0E-06 |
| sp|Q14576|ELAV3_HUMAN | ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3 | 72 | 144 | 5.0E-06 |
| sp|Q60900|ELAV3_MOUSE | ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1 | 72 | 144 | 5.0E-06 |
| sp|Q640A2|HNRDL_XENTR | Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus tropicalis GN=hnrnpdl PE=2 SV=1 | 53 | 180 | 5.0E-06 |
| sp|Q4WJT7|MRD1_ASPFU | Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 | 66 | 143 | 5.0E-06 |
| sp|P19682|ROC3_NICSY | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 70 | 151 | 5.0E-06 |
| sp|Q9LIS2|RBG4_ARATH | Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1 | 70 | 154 | 5.0E-06 |
| sp|Q03878|GRP1_DAUCA | Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1 | 72 | 147 | 5.0E-06 |
| sp|Q61474|MSI1H_MOUSE | RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1 | 49 | 155 | 6.0E-06 |
| sp|Q8K3P4|MSI1H_RAT | RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1 | 49 | 155 | 6.0E-06 |
| sp|O43347|MSI1H_HUMAN | RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1 | 49 | 155 | 6.0E-06 |
| sp|Q8W034|RNP1_ARATH | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1 | 65 | 156 | 8.0E-06 |
| sp|Q44556|RBPD_NOSS1 | Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpD PE=3 SV=3 | 71 | 147 | 8.0E-06 |
| sp|P70372|ELAV1_MOUSE | ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2 | 70 | 149 | 8.0E-06 |
| sp|Q9Z130|HNRDL_MOUSE | Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrnpdl PE=1 SV=1 | 53 | 160 | 9.0E-06 |
| sp|Q9SVM8|RBG2_ARATH | Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1 | 37 | 154 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3971 | 0.8658 | 0.0128 | 0.0764 | 0.0844 | 0.0063 | 0.0567 | 0.0153 | 0.0019 | 0.0004 |
| Orthofinder run ID | 4 |
| Orthogroup | 4992 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2311 MDYEAVGGDRYDDEPPRYERDNRSASPRPSRDDTDVLRRRSTSPNGNADAPPKVSSANKDDDDGAINPGSNLFVT GIHPRLSEAEVSKMFEKYGDVEKCQIMRDPHTKESRGFGFVKMVTPDQAEAAKEGLQGEQIEGRILSIEKARRSR PRTPTPGKYFGPPKREPRARFDDRRRGGYGGASGYGRDDYRYRGYDRGHGYDRRYEDRTYERGYREERRYDDRGY GRDYDRGYDRRDRDDYYGRERYGGRDDRDRYSQRGNTGGYERERYDRQGERESTRTRELAGSGYGDSVTRSDVRE PYGGPDPSVR* |
| Coding | >Hirsu2|2311 ATGGATTATGAAGCCGTAGGTGGCGATCGATATGATGATGAGCCGCCCCGTTATGAACGCGATAACCGAAGTGCC TCCCCACGCCCTTCGCGCGATGATACCGACGTGCTTCGTCGCCGGTCTACATCCCCGAACGGCAACGCCGACGCG CCCCCCAAAGTTTCGTCGGCCAACAAGGATGACGATGACGGTGCTATCAATCCTGGCTCTAATCTCTTCGTCACT GGAATTCATCCTCGCCTCTCCGAAGCTGAGGTATCCAAGATGTTCGAGAAATATGGCGATGTTGAGAAGTGCCAG ATAATGCGTGATCCGCACACAAAAGAATCACGTGGCTTTGGATTCGTGAAAATGGTCACACCCGACCAAGCCGAG GCTGCAAAGGAAGGTTTGCAGGGTGAGCAGATTGAAGGCCGGATTCTGAGCATCGAAAAAGCTCGTCGTTCCCGA CCTCGCACGCCCACTCCCGGGAAGTATTTCGGACCACCGAAGCGAGAACCGCGCGCCCGCTTTGATGATCGTCGG AGGGGAGGCTACGGCGGAGCCAGTGGCTACGGTCGGGACGATTACCGTTATCGAGGCTATGATAGAGGGCACGGA TACGATCGACGATATGAAGATCGCACCTATGAACGTGGGTATCGCGAGGAACGTCGCTATGACGATCGAGGTTAT GGCCGTGATTATGACAGGGGCTACGACCGCCGCGATCGCGACGATTACTACGGCCGTGAGCGCTATGGCGGTCGT GACGATCGTGATCGATACAGCCAGCGAGGCAACACGGGCGGTTACGAGCGCGAACGTTACGATCGCCAGGGAGAA CGTGAGTCCACGCGGACTCGGGAATTGGCCGGCTCCGGCTACGGCGATTCTGTCACTCGATCTGATGTGCGAGAG CCGTACGGAGGTCCCGACCCCTCGGTTCGGTAG |
| Transcript | >Hirsu2|2311 ATGGATTATGAAGCCGTAGGTGGCGATCGATATGATGATGAGCCGCCCCGTTATGAACGCGATAACCGAAGTGCC TCCCCACGCCCTTCGCGCGATGATACCGACGTGCTTCGTCGCCGGTCTACATCCCCGAACGGCAACGCCGACGCG CCCCCCAAAGTTTCGTCGGCCAACAAGGATGACGATGACGGTGCTATCAATCCTGGCTCTAATCTCTTCGTCACT GGAATTCATCCTCGCCTCTCCGAAGCTGAGGTATCCAAGATGTTCGAGAAATATGGCGATGTTGAGAAGTGCCAG ATAATGCGTGATCCGCACACAAAAGAATCACGTGGCTTTGGATTCGTGAAAATGGTCACACCCGACCAAGCCGAG GCTGCAAAGGAAGGTTTGCAGGGTGAGCAGATTGAAGGCCGGATTCTGAGCATCGAAAAAGCTCGTCGTTCCCGA CCTCGCACGCCCACTCCCGGGAAGTATTTCGGACCACCGAAGCGAGAACCGCGCGCCCGCTTTGATGATCGTCGG AGGGGAGGCTACGGCGGAGCCAGTGGCTACGGTCGGGACGATTACCGTTATCGAGGCTATGATAGAGGGCACGGA TACGATCGACGATATGAAGATCGCACCTATGAACGTGGGTATCGCGAGGAACGTCGCTATGACGATCGAGGTTAT GGCCGTGATTATGACAGGGGCTACGACCGCCGCGATCGCGACGATTACTACGGCCGTGAGCGCTATGGCGGTCGT GACGATCGTGATCGATACAGCCAGCGAGGCAACACGGGCGGTTACGAGCGCGAACGTTACGATCGCCAGGGAGAA CGTGAGTCCACGCGGACTCGGGAATTGGCCGGCTCCGGCTACGGCGATTCTGTCACTCGATCTGATGTGCGAGAG CCGTACGGAGGTCCCGACCCCTCGGTTCGGTAG |
| Gene | >Hirsu2|2311 ATGGATTATGAAGCCGTAGGTGGCGATCGATATGATGGTATGTCGCGTCATATTTACAGGTTCACCATAATATCC CCGACTTTGAAAGCAACGTTTTTCCTCAGGGCGTCAGCTCATAGCAGTAAAATTCGGGATGACTCTAAAATTTTC GCAGATGAGCCGCCCCGTTATGAACGCGATAACCGAAGTGCCTCCCCACGCCCTTCGCGCGATGATACCGACGTG CTTCGTCGCCGGTCTACATCCCCGAACGGCAACGCCGACGCGTGAGTTCTTCGCAAAAGAATCCTAGCCTGACAT TAACTAACAACCCCACCTAGGCCCCCCAAAGTTTCGTCGGCCAACAAGGATGACGATGACGGTGCTATCAATCCT GGCTCTAATCTCTTCGTCACTGGAATTCATCCTCGCCTCTCCGAAGCTGAGGTATCCAAGATGTTCGAGAAATAT GGCGATGTTGAGAAGTGCCAGATAATGCGTGATCCGCACACAAAAGAATCACGTGGCTTTGGATTCGTGAAAATG GTCACACCCGACCAAGCCGAGGCTGCAAAGGAAGGTTTGCAGGGTGAGCAGATTGAAGGCCGGATTCTGAGCATC GAAAAAGCTCGTCGTTCCCGACCTCGCACGCCCACTCCCGGGAAGTATTTCGGACCACCGAAGCGAGGCAAGTTG ACTGTCACCCTCTTGCTGGTTTAATGGCTGACGGGCTAGAAGAACCGCGCGCCCGCTTTGATGATCGTCGGAGGG GAGGCTACGGCGGAGCCAGTGGCTACGGTCGGGACGATTACCGTTATCGAGGCTATGATAGAGGGCACGGATACG ATCGACGATATGAAGATCGCACCTATGAACGTGGGTATCGCGAGGAACGTCGCTATGACGATCGAGGTTATGGCC GTGATTATGACAGGGGCTACGACCGCCGCGATCGCGACGATTACTACGGCCGTGAGCGCTATGGCGGTCGTGACG ATCGTGATCGATACAGCCAGCGAGGCAACACGGGCGGTTACGAGCGCGAACGTTACGATCGCCAGGGAGAACGTG AGTCCACGCGGACTCGGGAATTGGCCGGCTCCGGCTACGGCGATTCTGTCACTCGATCTGATGTGCGAGAGCCGT ACGGAGGTTTGGCCACCGCGAACATTTGCGAAGATAACGTTCGTCCACGCTGACGTATCTAGGTCCCGACCCCTC GGTTCGGTAG |