Protein ID | Hirsu2|2310 |
Gene name | |
Location | Contig_1545:133..2861 |
Strand | + |
Gene length (bp) | 2728 |
Transcript length (bp) | 2508 |
Coding sequence length (bp) | 2508 |
Protein length (aa) | 836 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08314 | Sec39 | Secretory pathway protein Sec39 | 5.4E-209 | 12 | 784 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14266|SEC39_SCHPO | Protein transport protein sec39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec39 PE=3 SV=1 | 483 | 687 | 4.0E-10 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Yes |
GO:0048193 | Golgi vesicle transport | No |
GO:0016192 | vesicle-mediated transport | No |
GO:0051179 | localization | No |
GO:0008150 | biological_process | No |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear export signal | 0.5309 | 0.6619 | 0.0989 | 0.0534 | 0.0725 | 0.0051 | 0.1651 | 0.1892 | 0.2635 | 0.0265 |
Orthofinder run ID | 4 |
Orthogroup | 4991 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2310 MGNSLTPTKIALLAAHLAVYADVNGLRWLISEHSATFSKALLLRILLTYLPETLQPGAYLLLLKDISVNDIAKCH RSEPDISWINALSDHQALRRARKLRLARLRCLNTAQDQFDLLSTFLVQKAFRIDSEAGVLSYVPDFLVPLLHHSP ALSTRIVATVLPFARRNVQYYLEIAPAHSLVQFQSLAGPDAVDYLLSRSGGPKFAQSSVVRDLRGLIGPWLCDSA RWESAAGDQMAPVGESRSSFCSGWEQTLSWLTTQAKLSWDETVGVIEHWDGPADIDLGPGIKPQLSDEKQRYLDH TYASALLGMAYCMQDATLESLSGAYRVCAKARLLLGHGQGDLSLRDVLLQESLPDMSTVDTTVGAKAIGLIRRFS QQSWNNCSVAVDQSITDLLMALITSALVLSRLGMPYTVRKVGDLAFAQDDLEQKAEVAKLLHAISSSAHQDHDEH WIKCRRDILWLRDWGRTTNPATATTATAVLGAVSKEFLESELLKALLSRSRYNLARALFEERAETILAPTRIREL VLQAALHAFDNASELDRTRGGLKRCGDIIRAFPVTVGDSSPGPQRIWALLRAIHILSRYQVVVQPGEPFSPVVLR AHPDPIEIINKILQQNPKAYTRLQEFLEMGIDIIQAGLLPHTRADQVHLGSDTHLYIAGQRITAMCVEAALKEDD FETAYSYVVSRLGLHSLQDPRSCYDKWSWAAASRAGQHVLDARSEQPTHLSNAGGDIEIRHLEQRLECLATSLRL APTSQVHDILKAFRRCEEQFDSAVMGEMIKEAAWDATHKATVCATARQAEEYHCSLQFAKIRFSGRASQFRAYPA GTEDQEKRPT* |
Coding | >Hirsu2|2310 ATGGGCAATTCGCTGACTCCTACCAAGATAGCACTCTTGGCTGCACACTTAGCTGTTTATGCTGATGTGAATGGC CTTCGCTGGCTAATTAGCGAGCATTCGGCTACCTTTTCCAAGGCTTTGCTCCTACGCATTTTGCTCACGTACCTG CCGGAGACATTACAACCGGGTGCATACTTATTGCTCCTGAAGGACATCTCTGTCAATGACATCGCCAAGTGCCAT CGGTCTGAGCCTGATATTTCTTGGATCAACGCCCTGTCTGATCACCAGGCATTGCGGAGGGCCAGGAAGCTACGA CTCGCTCGTCTCAGGTGTCTCAATACTGCGCAGGACCAATTTGATCTGCTTAGCACGTTTCTGGTCCAAAAAGCG TTCCGAATAGACTCGGAAGCAGGAGTGCTGTCCTACGTCCCTGACTTTCTGGTCCCTCTTCTTCATCATTCCCCC GCGCTGTCCACACGTATCGTTGCGACGGTTTTGCCGTTTGCGAGGAGGAATGTGCAATACTACCTTGAGATTGCA CCAGCTCACTCACTCGTTCAGTTTCAGAGCCTGGCTGGACCAGATGCCGTGGACTATCTTCTGTCTCGCAGTGGC GGGCCTAAATTTGCTCAGAGCTCTGTCGTTCGGGACCTCAGAGGGCTCATAGGACCGTGGCTGTGTGACAGCGCC CGTTGGGAGTCAGCGGCTGGAGATCAGATGGCTCCCGTTGGGGAATCACGGTCCTCTTTTTGCTCCGGCTGGGAA CAGACTTTGAGCTGGCTTACGACCCAGGCCAAATTATCATGGGATGAGACAGTCGGTGTAATCGAACATTGGGAT GGGCCGGCTGACATTGATCTTGGCCCCGGAATCAAACCGCAGCTGTCCGACGAAAAACAGCGGTATCTGGATCAT ACCTATGCCAGCGCATTGCTCGGGATGGCGTACTGTATGCAAGACGCAACACTGGAGTCGTTAAGTGGTGCCTAT CGAGTATGTGCCAAGGCTAGATTGCTCCTAGGCCACGGTCAGGGCGACTTGTCGCTGCGAGATGTTCTCCTCCAG GAGTCTTTACCGGACATGTCGACTGTCGACACAACAGTCGGAGCAAAAGCAATTGGCCTTATAAGAAGATTTTCG CAACAGTCTTGGAACAACTGCTCGGTTGCAGTCGACCAATCCATAACTGACCTGTTGATGGCACTCATTACCAGC GCCCTCGTTTTGAGCCGTCTGGGCATGCCCTACACAGTCAGGAAAGTCGGTGATCTTGCGTTTGCTCAAGACGAC CTGGAGCAAAAGGCTGAGGTTGCGAAACTTCTACACGCTATATCGAGTAGTGCACATCAGGACCACGATGAACAC TGGATAAAATGTCGCCGTGATATTCTCTGGCTCCGTGACTGGGGCAGGACTACCAACCCTGCGACCGCTACCACT GCCACAGCTGTATTAGGGGCGGTCTCGAAGGAGTTTTTGGAAAGTGAGCTTCTGAAAGCGTTGCTCTCTCGATCG CGCTACAACCTCGCCAGGGCGCTATTCGAGGAAAGGGCGGAAACAATCCTCGCTCCCACTCGTATCCGGGAGTTA GTTCTCCAAGCAGCCCTCCATGCATTCGATAATGCGTCTGAACTTGATCGCACACGAGGCGGCTTGAAAAGATGT GGTGACATCATCCGGGCCTTTCCAGTTACTGTGGGCGACTCTTCTCCGGGTCCACAACGGATATGGGCACTCCTC CGAGCGATACACATATTGAGCAGGTATCAGGTCGTAGTCCAGCCGGGCGAGCCTTTCAGCCCTGTGGTCCTGCGT GCTCACCCCGATCCTATTGAGATTATCAACAAAATTTTGCAGCAGAATCCCAAAGCATACACCCGCCTGCAAGAA TTCTTGGAAATGGGCATCGACATCATCCAGGCTGGGCTCCTTCCGCATACCCGAGCTGACCAAGTGCACCTAGGT TCAGACACACATCTTTACATAGCCGGTCAACGCATCACCGCCATGTGTGTCGAAGCCGCCTTGAAGGAAGATGAT TTCGAGACGGCGTATTCATATGTAGTCAGCCGCCTAGGATTGCATAGTCTTCAAGATCCCAGGAGCTGTTACGAT AAATGGTCTTGGGCAGCAGCTTCGAGAGCAGGACAACACGTCCTAGACGCGCGGTCTGAACAGCCCACCCATCTC AGCAATGCTGGTGGAGACATTGAGATTCGACATTTGGAGCAACGGTTGGAGTGCCTGGCCACATCTCTCAGACTG GCGCCCACTTCTCAGGTCCATGATATTCTCAAAGCTTTCCGGCGCTGTGAGGAGCAATTTGACTCAGCCGTGATG GGGGAAATGATCAAGGAAGCTGCTTGGGACGCCACGCATAAAGCCACTGTCTGTGCTACCGCTCGACAGGCGGAG GAATATCACTGCTCTCTCCAGTTTGCAAAGATCAGATTTTCCGGAAGGGCCAGCCAGTTTAGAGCCTATCCAGCC GGAACCGAAGACCAGGAAAAAAGACCGACTTAG |
Transcript | >Hirsu2|2310 ATGGGCAATTCGCTGACTCCTACCAAGATAGCACTCTTGGCTGCACACTTAGCTGTTTATGCTGATGTGAATGGC CTTCGCTGGCTAATTAGCGAGCATTCGGCTACCTTTTCCAAGGCTTTGCTCCTACGCATTTTGCTCACGTACCTG CCGGAGACATTACAACCGGGTGCATACTTATTGCTCCTGAAGGACATCTCTGTCAATGACATCGCCAAGTGCCAT CGGTCTGAGCCTGATATTTCTTGGATCAACGCCCTGTCTGATCACCAGGCATTGCGGAGGGCCAGGAAGCTACGA CTCGCTCGTCTCAGGTGTCTCAATACTGCGCAGGACCAATTTGATCTGCTTAGCACGTTTCTGGTCCAAAAAGCG TTCCGAATAGACTCGGAAGCAGGAGTGCTGTCCTACGTCCCTGACTTTCTGGTCCCTCTTCTTCATCATTCCCCC GCGCTGTCCACACGTATCGTTGCGACGGTTTTGCCGTTTGCGAGGAGGAATGTGCAATACTACCTTGAGATTGCA CCAGCTCACTCACTCGTTCAGTTTCAGAGCCTGGCTGGACCAGATGCCGTGGACTATCTTCTGTCTCGCAGTGGC GGGCCTAAATTTGCTCAGAGCTCTGTCGTTCGGGACCTCAGAGGGCTCATAGGACCGTGGCTGTGTGACAGCGCC CGTTGGGAGTCAGCGGCTGGAGATCAGATGGCTCCCGTTGGGGAATCACGGTCCTCTTTTTGCTCCGGCTGGGAA CAGACTTTGAGCTGGCTTACGACCCAGGCCAAATTATCATGGGATGAGACAGTCGGTGTAATCGAACATTGGGAT GGGCCGGCTGACATTGATCTTGGCCCCGGAATCAAACCGCAGCTGTCCGACGAAAAACAGCGGTATCTGGATCAT ACCTATGCCAGCGCATTGCTCGGGATGGCGTACTGTATGCAAGACGCAACACTGGAGTCGTTAAGTGGTGCCTAT CGAGTATGTGCCAAGGCTAGATTGCTCCTAGGCCACGGTCAGGGCGACTTGTCGCTGCGAGATGTTCTCCTCCAG GAGTCTTTACCGGACATGTCGACTGTCGACACAACAGTCGGAGCAAAAGCAATTGGCCTTATAAGAAGATTTTCG CAACAGTCTTGGAACAACTGCTCGGTTGCAGTCGACCAATCCATAACTGACCTGTTGATGGCACTCATTACCAGC GCCCTCGTTTTGAGCCGTCTGGGCATGCCCTACACAGTCAGGAAAGTCGGTGATCTTGCGTTTGCTCAAGACGAC CTGGAGCAAAAGGCTGAGGTTGCGAAACTTCTACACGCTATATCGAGTAGTGCACATCAGGACCACGATGAACAC TGGATAAAATGTCGCCGTGATATTCTCTGGCTCCGTGACTGGGGCAGGACTACCAACCCTGCGACCGCTACCACT GCCACAGCTGTATTAGGGGCGGTCTCGAAGGAGTTTTTGGAAAGTGAGCTTCTGAAAGCGTTGCTCTCTCGATCG CGCTACAACCTCGCCAGGGCGCTATTCGAGGAAAGGGCGGAAACAATCCTCGCTCCCACTCGTATCCGGGAGTTA GTTCTCCAAGCAGCCCTCCATGCATTCGATAATGCGTCTGAACTTGATCGCACACGAGGCGGCTTGAAAAGATGT GGTGACATCATCCGGGCCTTTCCAGTTACTGTGGGCGACTCTTCTCCGGGTCCACAACGGATATGGGCACTCCTC CGAGCGATACACATATTGAGCAGGTATCAGGTCGTAGTCCAGCCGGGCGAGCCTTTCAGCCCTGTGGTCCTGCGT GCTCACCCCGATCCTATTGAGATTATCAACAAAATTTTGCAGCAGAATCCCAAAGCATACACCCGCCTGCAAGAA TTCTTGGAAATGGGCATCGACATCATCCAGGCTGGGCTCCTTCCGCATACCCGAGCTGACCAAGTGCACCTAGGT TCAGACACACATCTTTACATAGCCGGTCAACGCATCACCGCCATGTGTGTCGAAGCCGCCTTGAAGGAAGATGAT TTCGAGACGGCGTATTCATATGTAGTCAGCCGCCTAGGATTGCATAGTCTTCAAGATCCCAGGAGCTGTTACGAT AAATGGTCTTGGGCAGCAGCTTCGAGAGCAGGACAACACGTCCTAGACGCGCGGTCTGAACAGCCCACCCATCTC AGCAATGCTGGTGGAGACATTGAGATTCGACATTTGGAGCAACGGTTGGAGTGCCTGGCCACATCTCTCAGACTG GCGCCCACTTCTCAGGTCCATGATATTCTCAAAGCTTTCCGGCGCTGTGAGGAGCAATTTGACTCAGCCGTGATG GGGGAAATGATCAAGGAAGCTGCTTGGGACGCCACGCATAAAGCCACTGTCTGTGCTACCGCTCGACAGGCGGAG GAATATCACTGCTCTCTCCAGTTTGCAAAGATCAGATTTTCCGGAAGGGCCAGCCAGTTTAGAGCCTATCCAGCC GGAACCGAAGACCAGGAAAAAAGACCGACTTAG |
Gene | >Hirsu2|2310 ATGGGCAATTCGCTGACTCCTACCAAGATAGCACTCTTGGCTGCACACTTAGCTGTTTATGCTGATGTGAATGGC CTTCGCTGGCTAATTAGCGAGCATTCGGCTACCTTTTCCAAGGCTTTGCTCCTACGCATTTTGCTCACGTACCTG CCGGAGACATTACAACCGGGTGCATACTTATTGCTCCTGAAGGACATCTCTGTCAATGACATCGCCAAGTGCCAT CGGTCTGAGCCTGATATTTCTTGGATCAACGCCCTGTCTGATCACCAGGCATTGCGGAGGGCCAGGAAGCTACGA CTCGCTCGTCTCAGGTGTCTCAATACTGCGCAGGACCAATTTGATCTGCTTAGCACGTTTCTGGTCCAAAAAGCG TTCCGAATAGACTCGGAAGCAGGAGTGCTGTCCTACGTCCCTGACTTTCTGGTCCCTCTTCTTCATCATTCCCCC GCGCTGTCCACACGTATCGTTGCGACGGTTTTGCCGTTTGCGAGGAGGAATGTGCAATACTACCTTGAGATTGCA CCAGCTCACTCACTCGTTCAGTTTCAGAGCCTGGCTGGACCAGATGCCGTGGACTATCTTCTGTCTCGCAGTGGC GGGCCTAAATTTGCTCAGAGCTCTGTCGTTCGGGACCTCAGAGGGCTCATAGGACCGTGGCTGTGTGACAGCGCC CGTTGGGAGTCAGCGGCTGGAGATCAGATGGCTCCCGTTGGGGAATCACGGTCCTCTTTTTGCTCCGGCTGGGAA CAGACTTTGAGCTGGCTTACGACCCAGGCCAAATTATCATGGGATGAGACAGTCGGTGTAATCGAACATTGGGAT GGGCCGGCTGACATTGATCTTGGCCCCGGAATCAAACCGCAGCTGTCCGACGAAAAACAGCGGTATCTGGATCAT ACCTATGCCAGCGCATTGCTCGGGATGGCGTACTGTATGCAAGACGCAACACTGGAGTCGTTAAGTGGTGCCTAT CGAGTATGTGCCAAGGCTAGATTGCTCCTAGGCCACGGTCAGGGCGACTTGTCGCTGCGAGATGTTCTCCTCCAG GAGTCTTTACCGGACATGTCGACTGTCGACACAACAGTCGGAGCAAAAGCAATTGGCCTTATAAGAAGATTTTCG CAACAGTCTTGGAACAACTGCTCGGTTGCAGTCGACCAATCCATAACTGACCTGTTGATGGCACTCATTACCAGC GCCCTCGTTTTGAGCCGTCTGGGCATGCCCTACACAGTCAGGAAAGTCGGTGATCTTGCGTTTGCTCAAGACGAC CTGGAGCAAAAGGCTGAGGTTGCGAAACTTCTACACGCTATATCGAGTAGTGCACATCAGGACCACGATGAACAC TGGATAAAATGTCGCCGTGATATTCTCTGGCTCCGTGACTGGGGCAGGACTACCAACCCTGCGACCGCTACCACT GCCACAGCTGTATTAGGGGCGGTCTCGAAGGAGTTTTTGGAAAGTGAGCTTCTGAAAGCGTTGCTCTCTCGATCG CGTATGTATTACCCTGGCAATCTATTCAGCTGCGTCTTCTCATAGAAGGCAGGCTACAACCTCGCCAGGGCGCTA TTCGAGGAAAGGGCGGAAACAATCCTCGCTCCCACTCGTATCCGGGAGTTAGTTCTCCAAGCAGCCCTCCATGCA TTCGATAATGCGTCTGAACTTGATCGCACACGAGGCGGCTTGAAAAGATGTGGTGACATGTACCAGCACTCCGCA CTCGAGCCGCCAATGACATCAACTGATGATTGCTCATTAGCATCCGGGCCTTTCCAGTTACTGTGGGCGACTCTT CTCCGGGTCCACAACGGATATGGGCACTCCTCCGAGCGATACACATATTGAGCAGGTATCAGGTCGTAGTCCAGC CGGGCGAGCCTTTCAGCCCTGTGGTCCTGCGTGCTCACCCCGATCCTATTGAGATTATCAACAAAATTTTGCAGC AGAATCCCAAAGCATACACCCGCCTGCAAGAATTCTTGGAAATGGGCATCGACATCATCCAGGCTGGGCTCCTTC CGCATACCCGAGCTGACCAAGTGCACCTAGGTTCAGACACACATCTTTACATAGCCGGTCAACGCATCACCGCCA TGTGTGTCGAAGCCGCCTTGAAGGAAGATGATTTCGAGACGGCGTATTCATATGTAGTCAGCCGCCTAGGATTGC ATAGTCTTCAAGATCCCAGGAGCTGTTACGATAAATGGTCTTGGGCAGCAGCTTCGAGAGCAGGACAACACGTCC TAGACGCGCGGTCTGAACAGCCCACCCATCTCAGCAATGCTGGTGGAGACATTGAGATTCGACATTTGGAGCAAC GGTTGGAGTGCCTGGCCACATCTCTCAGACTGGCGCCCACTTCTCAGGTCCATGATATTCTCAAAGCTTTCCGGC GCTGTGAGGAGCAATTTGACTCAGCCGTGATGGGGGAAATGATCAAGGAAGCTGCTTGGGACGCCACGCATAAAG CCAGTAATATACCCGGCACTGTTCACACAGCACTCGGCACATGCTCACCTTGCAACACAGCTGTCTGTGCTACCG CTCGACAGGCGGAGGTGGTGCCCATGTCAATTTTTGATCTTTCCCGAACAACAGCTAAAATCACACAAAGGAATA TCACTGCTCTCTCCAGTTTGCAAAGATCAGATTTTCCGGAAGGGCCAGCCAGTTTAGAGCCTATCCAGCCGGAAC CGAAGACCAGGAAAAAAGACCGACTTAG |