Protein ID | Hirsu2|2303 |
Gene name | |
Location | Contig_1541:2534..2962 |
Strand | - |
Gene length (bp) | 428 |
Transcript length (bp) | 339 |
Coding sequence length (bp) | 339 |
Protein length (aa) | 113 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07876 | Dabb | Stress responsive A/B Barrel Domain | 7.2E-24 | 4 | 107 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6951 | 0.2653 | 0.1894 | 0.0425 | 0.5395 | 0.0764 | 0.0715 | 0.1443 | 0.0449 | 0.0612 |
Orthofinder run ID | 4 |
Orthogroup | 492 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2303 MAPIVHIVFFQFKPELTAAERQKVCDQMLALKDSCLHPESEKPYIQSSVGGLDRSIEGAQEGMTHAFVVEFASQD DRDYYVRQDPAHRAFVQHVLPKLVKAQIIDFSPGLFC* |
Coding | >Hirsu2|2303 ATGGCGCCCATCGTCCACATCGTCTTCTTCCAGTTCAAGCCCGAGCTCACGGCGGCCGAGCGCCAAAAGGTGTGC GACCAGATGCTGGCACTCAAGGACAGCTGCCTGCACCCGGAGTCCGAGAAGCCGTACATCCAGTCGTCGGTCGGC GGGCTGGACCGGAGCATCGAGGGCGCGCAGGAGGGCATGACGCACGCCTTCGTCGTCGAGTTCGCCAGCCAGGAC GACCGCGACTACTACGTCCGCCAGGACCCGGCCCACCGCGCCTTTGTACAGCACGTGCTGCCCAAGCTGGTCAAG GCCCAGATCATCGACTTCAGCCCGGGCCTGTTCTGCTGA |
Transcript | >Hirsu2|2303 ATGGCGCCCATCGTCCACATCGTCTTCTTCCAGTTCAAGCCCGAGCTCACGGCGGCCGAGCGCCAAAAGGTGTGC GACCAGATGCTGGCACTCAAGGACAGCTGCCTGCACCCGGAGTCCGAGAAGCCGTACATCCAGTCGTCGGTCGGC GGGCTGGACCGGAGCATCGAGGGCGCGCAGGAGGGCATGACGCACGCCTTCGTCGTCGAGTTCGCCAGCCAGGAC GACCGCGACTACTACGTCCGCCAGGACCCGGCCCACCGCGCCTTTGTACAGCACGTGCTGCCCAAGCTGGTCAAG GCCCAGATCATCGACTTCAGCCCGGGCCTGTTCTGCTGA |
Gene | >Hirsu2|2303 ATGGCGCCCATCGTCCACATCGTCTTCTTCCAGTTCAAGCCCGAGCTCACGGCGGCCGAGCGCCAAAAGGTAGGT CCATCGTCCGTCGTCTGCCGCGCGACGGCAGCCCGTGAGGGTGGAGGGATGAAGCGGCTGACGAGACTTGCAAAC GGCCTCAGGTGTGCGACCAGATGCTGGCACTCAAGGACAGCTGCCTGCACCCGGAGTCCGAGAAGCCGTACATCC AGTCGTCGGTCGGCGGGCTGGACCGGAGCATCGAGGGCGCGCAGGAGGGCATGACGCACGCCTTCGTCGTCGAGT TCGCCAGCCAGGACGACCGCGACTACTACGTCCGCCAGGACCCGGCCCACCGCGCCTTTGTACAGCACGTGCTGC CCAAGCTGGTCAAGGCCCAGATCATCGACTTCAGCCCGGGCCTGTTCTGCTGA |