© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|230 |
| Gene name | |
| Location | Contig_104:30460..32006 |
| Strand | - |
| Gene length (bp) | 1546 |
| Transcript length (bp) | 1485 |
| Coding sequence length (bp) | 1485 |
| Protein length (aa) | 495 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 3.4E-43 | 1 | 327 |
| PF11954 | DUF3471 | Domain of unknown function (DUF3471) | 8.8E-15 | 387 | 480 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5HDB2|FLP_STAAC | Protein flp OS=Staphylococcus aureus (strain COL) GN=flp PE=4 SV=1 | 1 | 326 | 1.0E-13 |
| sp|Q6GDZ1|FLP_STAAR | Protein flp OS=Staphylococcus aureus (strain MRSA252) GN=flp PE=3 SV=1 | 1 | 326 | 2.0E-13 |
| sp|Q8NUZ4|FLP_STAAW | Protein flp OS=Staphylococcus aureus (strain MW2) GN=flp PE=3 SV=1 | 1 | 326 | 3.0E-13 |
| sp|Q7A3Q5|FLP_STAAN | Protein flp OS=Staphylococcus aureus (strain N315) GN=flp PE=1 SV=1 | 1 | 326 | 1.0E-12 |
| sp|Q99RJ0|FLP_STAAM | Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=flp PE=3 SV=1 | 1 | 326 | 1.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5HDB2|FLP_STAAC | Protein flp OS=Staphylococcus aureus (strain COL) GN=flp PE=4 SV=1 | 1 | 326 | 1.0E-13 |
| sp|Q6GDZ1|FLP_STAAR | Protein flp OS=Staphylococcus aureus (strain MRSA252) GN=flp PE=3 SV=1 | 1 | 326 | 2.0E-13 |
| sp|Q8NUZ4|FLP_STAAW | Protein flp OS=Staphylococcus aureus (strain MW2) GN=flp PE=3 SV=1 | 1 | 326 | 3.0E-13 |
| sp|Q7A3Q5|FLP_STAAN | Protein flp OS=Staphylococcus aureus (strain N315) GN=flp PE=1 SV=1 | 1 | 326 | 1.0E-12 |
| sp|Q99RJ0|FLP_STAAM | Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=flp PE=3 SV=1 | 1 | 326 | 1.0E-12 |
| sp|Q9KJ74|FLP_STAAU | Protein flp OS=Staphylococcus aureus GN=flp PE=4 SV=1 | 1 | 326 | 2.0E-12 |
| sp|Q2FVH6|FLP_STAA8 | Protein flp OS=Staphylococcus aureus (strain NCTC 8325) GN=flp PE=4 SV=1 | 1 | 326 | 2.0E-12 |
| sp|Q6G6M9|FLP_STAAS | Protein flp OS=Staphylococcus aureus (strain MSSA476) GN=flp PE=3 SV=1 | 1 | 326 | 3.0E-12 |
| sp|Q579G4|DAP_BRUAB | D-aminopeptidase OS=Brucella abortus biovar 1 (strain 9-941) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|B2SD81|DAP_BRUA1 | D-aminopeptidase OS=Brucella abortus (strain S19) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|Q2YLB4|DAP_BRUA2 | D-aminopeptidase OS=Brucella abortus (strain 2308) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|A9MCM7|DAP_BRUC2 | D-aminopeptidase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|A9WVV8|DAP_BRUSI | D-aminopeptidase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|Q8FV99|DAP_BRUSU | D-aminopeptidase OS=Brucella suis biovar 1 (strain 1330) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|C0RM93|DAP_BRUMB | D-aminopeptidase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|Q8YD27|DAP_BRUME | D-aminopeptidase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=dap PE=3 SV=1 | 7 | 351 | 1.0E-11 |
| sp|P00811|AMPC_ECOLI | Beta-lactamase OS=Escherichia coli (strain K12) GN=ampC PE=1 SV=1 | 1 | 329 | 2.0E-11 |
| sp|A5VVL2|DAP_BRUO2 | D-aminopeptidase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dap PE=3 SV=1 | 7 | 351 | 2.0E-11 |
| sp|P15555|DAC_STRSR | D-alanyl-D-alanine carboxypeptidase OS=Streptomyces sp. (strain R61) PE=1 SV=2 | 4 | 351 | 3.0E-10 |
| sp|P45460|AMPC_YEREN | Beta-lactamase OS=Yersinia enterocolitica GN=ampC PE=3 SV=1 | 1 | 330 | 5.0E-09 |
| sp|Q9ZBA9|DAP_OCHAN | D-aminopeptidase OS=Ochrobactrum anthropi GN=dap PE=1 SV=3 | 7 | 327 | 3.0E-08 |
| sp|Q06317|PBP4_AMYLA | Penicillin-binding protein 4 OS=Amycolatopsis lactamdurans GN=pbp PE=3 SV=1 | 4 | 345 | 4.0E-08 |
| sp|P05364|AMPC_ENTCL | Beta-lactamase OS=Enterobacter cloacae GN=ampC PE=1 SV=1 | 1 | 329 | 4.0E-07 |
| sp|P32959|PBPE_BACSU | Penicillin-binding protein 4* OS=Bacillus subtilis (strain 168) GN=pbpE PE=1 SV=1 | 8 | 211 | 8.0E-07 |
| sp|P05193|AMPC_CITFR | Beta-lactamase OS=Citrobacter freundii GN=ampC PE=1 SV=1 | 1 | 329 | 3.0E-06 |
| sp|P24735|AMPC_PSEAE | Beta-lactamase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ampC PE=1 SV=2 | 1 | 325 | 3.0E-06 |
| sp|P94958|AMPC_MORMO | Beta-lactamase OS=Morganella morganii GN=ampC PE=3 SV=1 | 1 | 325 | 6.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Peroxisomal targeting signal | 0.7891 | 0.2037 | 0.6024 | 0.1952 | 0.0833 | 0.0783 | 0.1053 | 0.054 | 0.1792 | 0.0536 |
| Orthofinder run ID | 4 |
| Orthogroup | 111 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|230 MQMQHVPGLAIAILQNDTVASTGYGWASIDPPKPCTADTLFDIASASKSLTAASVGLLIHDNVRYPEVRYNATMS SLLPDDFVMAKEEYTKEVTVADVLSHRTGIASHDLSYFGSGATLPDDARSVTRNLRNLDIAYPLRFKHVYCNMMY TVASYLVEKKSGLPFADFLERYFFGPLNMTSTNLQPGRARAKGLGDRIATGYVWHNKRKQYQGLELLDSPEAQGA DAVITSVNDYIKWVKAMVNHEPPITNDIYKGLVRPRIVEDEGDSPQRPFTSPAYYAAGWETYSYRGHTVVSHDGS DIGFHSYHFFVPELKAGGVIFDNSDSGGPILNILMREVIDEFLNVPKAKRVNWVAVETEGAEAKAGARLEGDAKA EDLRDRCPGVREPEPQTLPLDAYTGKYWNPGYREMTVQINNGSLFVDAGDRSMAFTLKFRHLCNQTKYTAHSRSP ASLGFADSDDLDAEFRLENNKAVRMGLQLDDDLPGFIWFDKREA* |
| Coding | >Hirsu2|230 ATGCAGATGCAACACGTGCCCGGTCTGGCCATCGCGATCCTGCAGAACGACACGGTAGCTTCCACGGGTTACGGA TGGGCGTCCATCGACCCGCCCAAGCCGTGCACGGCGGACACCTTATTCGACATTGCCTCGGCCTCGAAGTCGTTG ACTGCTGCGTCGGTCGGGCTTCTGATCCACGACAATGTCCGCTACCCAGAGGTGCGGTACAATGCCACCATGTCG AGCTTGCTGCCCGACGACTTCGTCATGGCCAAGGAAGAATATACCAAGGAGGTCACCGTAGCAGATGTCCTGAGC CACAGGACAGGGATAGCGAGCCACGACCTATCATATTTCGGTTCCGGCGCAACACTGCCTGATGACGCCAGGTCG GTCACGAGGAATCTACGCAACTTGGACATAGCGTATCCATTACGGTTCAAACACGTCTACTGCAACATGATGTAT ACCGTGGCGTCGTACTTGGTTGAGAAGAAGAGCGGGCTCCCCTTCGCCGACTTCCTCGAACGATACTTCTTCGGG CCCCTGAACATGACGTCGACCAACCTCCAGCCGGGACGCGCCCGCGCCAAGGGACTCGGGGACCGCATAGCCACC GGATACGTGTGGCATAACAAGAGGAAGCAATACCAAGGGCTCGAACTGCTTGACAGTCCCGAAGCCCAAGGGGCC GACGCCGTGATAACGAGCGTCAACGACTACATCAAATGGGTCAAGGCCATGGTGAACCACGAACCCCCCATCACC AACGACATCTACAAAGGACTCGTCCGACCGAGGATAGTCGAGGATGAGGGAGACAGCCCACAGCGGCCGTTCACC TCACCAGCGTACTACGCTGCCGGGTGGGAGACGTACTCTTACCGGGGCCACACGGTCGTCAGTCATGACGGGAGC GATATTGGCTTCCACTCATATCATTTCTTCGTCCCCGAACTCAAGGCCGGCGGCGTCATATTCGACAACTCGGAC AGCGGCGGCCCCATCCTCAACATCCTCATGCGAGAGGTCATCGACGAGTTCCTGAACGTGCCCAAGGCGAAACGG GTGAACTGGGTCGCGGTCGAGACCGAAGGCGCCGAGGCCAAGGCAGGCGCCCGACTGGAGGGAGATGCGAAGGCG GAGGACTTGCGCGACCGCTGCCCCGGCGTCAGAGAGCCAGAGCCCCAGACCCTACCGCTCGACGCTTACACGGGA AAGTACTGGAACCCGGGTTACCGCGAGATGACGGTCCAGATCAACAACGGGAGTCTCTTCGTCGACGCCGGCGAT CGATCGATGGCGTTCACGCTCAAGTTCCGTCATCTATGCAACCAGACCAAGTACACTGCGCACTCGAGATCTCCT GCCTCCCTAGGATTCGCGGACTCGGACGACCTGGATGCTGAGTTTCGGTTGGAAAACAACAAGGCGGTCAGGATG GGCTTGCAACTCGACGACGACTTGCCCGGGTTCATTTGGTTTGACAAACGCGAGGCATGA |
| Transcript | >Hirsu2|230 ATGCAGATGCAACACGTGCCCGGTCTGGCCATCGCGATCCTGCAGAACGACACGGTAGCTTCCACGGGTTACGGA TGGGCGTCCATCGACCCGCCCAAGCCGTGCACGGCGGACACCTTATTCGACATTGCCTCGGCCTCGAAGTCGTTG ACTGCTGCGTCGGTCGGGCTTCTGATCCACGACAATGTCCGCTACCCAGAGGTGCGGTACAATGCCACCATGTCG AGCTTGCTGCCCGACGACTTCGTCATGGCCAAGGAAGAATATACCAAGGAGGTCACCGTAGCAGATGTCCTGAGC CACAGGACAGGGATAGCGAGCCACGACCTATCATATTTCGGTTCCGGCGCAACACTGCCTGATGACGCCAGGTCG GTCACGAGGAATCTACGCAACTTGGACATAGCGTATCCATTACGGTTCAAACACGTCTACTGCAACATGATGTAT ACCGTGGCGTCGTACTTGGTTGAGAAGAAGAGCGGGCTCCCCTTCGCCGACTTCCTCGAACGATACTTCTTCGGG CCCCTGAACATGACGTCGACCAACCTCCAGCCGGGACGCGCCCGCGCCAAGGGACTCGGGGACCGCATAGCCACC GGATACGTGTGGCATAACAAGAGGAAGCAATACCAAGGGCTCGAACTGCTTGACAGTCCCGAAGCCCAAGGGGCC GACGCCGTGATAACGAGCGTCAACGACTACATCAAATGGGTCAAGGCCATGGTGAACCACGAACCCCCCATCACC AACGACATCTACAAAGGACTCGTCCGACCGAGGATAGTCGAGGATGAGGGAGACAGCCCACAGCGGCCGTTCACC TCACCAGCGTACTACGCTGCCGGGTGGGAGACGTACTCTTACCGGGGCCACACGGTCGTCAGTCATGACGGGAGC GATATTGGCTTCCACTCATATCATTTCTTCGTCCCCGAACTCAAGGCCGGCGGCGTCATATTCGACAACTCGGAC AGCGGCGGCCCCATCCTCAACATCCTCATGCGAGAGGTCATCGACGAGTTCCTGAACGTGCCCAAGGCGAAACGG GTGAACTGGGTCGCGGTCGAGACCGAAGGCGCCGAGGCCAAGGCAGGCGCCCGACTGGAGGGAGATGCGAAGGCG GAGGACTTGCGCGACCGCTGCCCCGGCGTCAGAGAGCCAGAGCCCCAGACCCTACCGCTCGACGCTTACACGGGA AAGTACTGGAACCCGGGTTACCGCGAGATGACGGTCCAGATCAACAACGGGAGTCTCTTCGTCGACGCCGGCGAT CGATCGATGGCGTTCACGCTCAAGTTCCGTCATCTATGCAACCAGACCAAGTACACTGCGCACTCGAGATCTCCT GCCTCCCTAGGATTCGCGGACTCGGACGACCTGGATGCTGAGTTTCGGTTGGAAAACAACAAGGCGGTCAGGATG GGCTTGCAACTCGACGACGACTTGCCCGGGTTCATTTGGTTTGACAAACGCGAGGCATGA |
| Gene | >Hirsu2|230 ATGCAGATGCAACACGTGCCCGGTCTGGCCATCGCGATCCTGCAGAACGACACGGTAGCTTCCACGGGTTACGGA TGGGCGTCCATCGACCCGCCCAAGCCGTGCACGGCGGACACCTTATTCGACATTGCCTCGGCCTCGAAGTCGTTG ACTGCTGCGTCGGTCGGGCTTCTGATCCACGACAATGTCCGCTACCCAGAGGTGCGGTACAATGCCACCATGTCG AGCTTGCTGCCCGACGACTTCGTCATGGCCAAGGAAGAATATACCAAGGAGGTCACCGTAGCAGATGTCCTGAGC CACAGGACAGGGATAGCGAGGTATATTTCGATGACTTGAGTCCTCGGTGGCTTTCGTACTGACTGGGGTGACGTG ATACAGCCACGACCTATCATATTTCGGTTCCGGCGCAACACTGCCTGATGACGCCAGGTCGGTCACGAGGAATCT ACGCAACTTGGACATAGCGTATCCATTACGGTTCAAACACGTCTACTGCAACATGATGTATACCGTGGCGTCGTA CTTGGTTGAGAAGAAGAGCGGGCTCCCCTTCGCCGACTTCCTCGAACGATACTTCTTCGGGCCCCTGAACATGAC GTCGACCAACCTCCAGCCGGGACGCGCCCGCGCCAAGGGACTCGGGGACCGCATAGCCACCGGATACGTGTGGCA TAACAAGAGGAAGCAATACCAAGGGCTCGAACTGCTTGACAGTCCCGAAGCCCAAGGGGCCGACGCCGTGATAAC GAGCGTCAACGACTACATCAAATGGGTCAAGGCCATGGTGAACCACGAACCCCCCATCACCAACGACATCTACAA AGGACTCGTCCGACCGAGGATAGTCGAGGATGAGGGAGACAGCCCACAGCGGCCGTTCACCTCACCAGCGTACTA CGCTGCCGGGTGGGAGACGTACTCTTACCGGGGCCACACGGTCGTCAGTCATGACGGGAGCGATATTGGCTTCCA CTCATATCATTTCTTCGTCCCCGAACTCAAGGCCGGCGGCGTCATATTCGACAACTCGGACAGCGGCGGCCCCAT CCTCAACATCCTCATGCGAGAGGTCATCGACGAGTTCCTGAACGTGCCCAAGGCGAAACGGGTGAACTGGGTCGC GGTCGAGACCGAAGGCGCCGAGGCCAAGGCAGGCGCCCGACTGGAGGGAGATGCGAAGGCGGAGGACTTGCGCGA CCGCTGCCCCGGCGTCAGAGAGCCAGAGCCCCAGACCCTACCGCTCGACGCTTACACGGGAAAGTACTGGAACCC GGGTTACCGCGAGATGACGGTCCAGATCAACAACGGGAGTCTCTTCGTCGACGCCGGCGATCGATCGATGGCGTT CACGCTCAAGTTCCGTCATCTATGCAACCAGACCAAGTACACTGCGCACTCGAGATCTCCTGCCTCCCTAGGATT CGCGGACTCGGACGACCTGGATGCTGAGTTTCGGTTGGAAAACAACAAGGCGGTCAGGATGGGCTTGCAACTCGA CGACGACTTGCCCGGGTTCATTTGGTTTGACAAACGCGAGGCATGA |