Protein ID | Hirsu2|2297 |
Gene name | |
Location | Contig_154:26072..26723 |
Strand | + |
Gene length (bp) | 651 |
Transcript length (bp) | 342 |
Coding sequence length (bp) | 342 |
Protein length (aa) | 114 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03911 | Sec61_beta | Sec61beta family | 9.0E-19 | 65 | 105 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9HFC7|SC61B_YARLI | Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1 | 24 | 111 | 5.0E-32 |
sp|Q8J2P4|SC61B_KLULA | Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1 | 30 | 108 | 3.0E-28 |
sp|P52871|SC6B2_YEAST | Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1 | 29 | 109 | 1.0E-26 |
sp|O43002|SC61B_SCHPO | Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1 | 1 | 113 | 2.0E-21 |
sp|P52870|SC6B1_YEAST | Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1 | 25 | 107 | 7.0E-19 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9HFC7|SC61B_YARLI | Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1 | 24 | 111 | 5.0E-32 |
sp|Q8J2P4|SC61B_KLULA | Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1 | 30 | 108 | 3.0E-28 |
sp|P52871|SC6B2_YEAST | Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1 | 29 | 109 | 1.0E-26 |
sp|O43002|SC61B_SCHPO | Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1 | 1 | 113 | 2.0E-21 |
sp|P52870|SC6B1_YEAST | Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1 | 25 | 107 | 7.0E-19 |
sp|Q5RB31|SC61B_PONAB | Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 | 36 | 109 | 3.0E-13 |
sp|P60468|SC61B_HUMAN | Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2 | 36 | 109 | 3.0E-13 |
sp|P60467|SC61B_CANLF | Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 | 36 | 109 | 3.0E-13 |
sp|Q9CQS8|SC61B_MOUSE | Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 | 36 | 109 | 9.0E-13 |
sp|Q54YR4|SC61B_DICDI | Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1 | 53 | 109 | 8.0E-09 |
sp|P38389|SC61B_ARATH | Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1 | 69 | 107 | 2.0E-07 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 41 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 82 | 104 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2297 MSSPRSSSPVNSQAAASGVSAGRASSPTPPGGARTAIRRRAAADQKEKIANARPTSTRAAGAGGSSSTMLRLYTD ESPGLKVDPVIVLVLSLVFIFSVVALHIIAKITRRFSS* |
Coding | >Hirsu2|2297 ATGTCTTCTCCCCGGTCTTCATCCCCCGTCAACTCGCAGGCGGCGGCCAGCGGCGTCAGCGCTGGCCGCGCCTCG TCCCCGACACCTCCAGGAGGCGCCAGGACGGCAATCCGACGACGCGCTGCGGCCGATCAGAAGGAGAAGATCGCC AATGCCCGGCCCACCAGCACGAGGGCTGCCGGTGCCGGCGGCTCCAGCAGCACCATGCTGAGACTCTATACGGAC GAATCGCCCGGCCTGAAGGTCGATCCTGTCATCGTACTCGTTCTTTCTCTCGTGTTCATCTTCAGTGTTGTGGCC CTGCACATTATCGCCAAGATCACGCGACGATTTTCGAGCTAG |
Transcript | >Hirsu2|2297 ATGTCTTCTCCCCGGTCTTCATCCCCCGTCAACTCGCAGGCGGCGGCCAGCGGCGTCAGCGCTGGCCGCGCCTCG TCCCCGACACCTCCAGGAGGCGCCAGGACGGCAATCCGACGACGCGCTGCGGCCGATCAGAAGGAGAAGATCGCC AATGCCCGGCCCACCAGCACGAGGGCTGCCGGTGCCGGCGGCTCCAGCAGCACCATGCTGAGACTCTATACGGAC GAATCGCCCGGCCTGAAGGTCGATCCTGTCATCGTACTCGTTCTTTCTCTCGTGTTCATCTTCAGTGTTGTGGCC CTGCACATTATCGCCAAGATCACGCGACGATTTTCGAGCTAG |
Gene | >Hirsu2|2297 ATGGTATGCGCCCCTCTCCGACTCCAATTCCCTCACCGCGAATGCAACCTGCCAGCTTTCCCAGGGTGCACCAGA ATCGCTGCCGGAAGCGAGAGCCATTTCGCCGCTGATACTCGTTCGCCGTATGCTAACACGAGGCTCTCCACAGTC TTCTCCCCGGTCTTCATCCCCCGTCAACTCGCAGGCGGCGGCCAGCGGCGTCAGCGCTGGCCGCGCCTCGTCCCC GACACCTCCAGGAGGCGCCAGGACGGCAATCCGACGACGCGCTGCGGCCGATCAGAAGGAGAAGATCGCCAATGC CCGGCCCACCAGCACGAGGGCTGCCGGTGCCGGCGGCTCCAGCAGCACCATGCTGAGTACGTGTCTCCCCCGTGC TCGGGCTCACCCTTGCAGCTGCCGGCTCCTCGTGCATTGATTGGGAATCCGAATTAACGCTTCTTTTCCGTCGCA GGACTCTATACGGACGAATCGCCCGGCCTGAAGGTCGATCCTGTCATCGTACTCGTTCTTTCTCTCGTGTTCATC TTCAGTGTTGTGGCCCTGCACAGTGAGTGTTTCTCAATCGGGCCTATCCCTATCTAAAGTCTGGTAAATACTGAC GGACCGCGTCCTGCAGTTATCGCCAAGATCACGCGACGATTTTCGAGCTAG |