Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2295
Gene name
LocationContig_154:17015..17702
Strand-
Gene length (bp)687
Transcript length (bp)687
Coding sequence length (bp)687
Protein length (aa) 229

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06472 ABC_membrane_2 ABC transporter transmembrane region 2 5.8E-14 152 219

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P41909|PXA1_YEAST Peroxisomal long-chain fatty acid import protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PXA1 PE=1 SV=2 77 208 2.0E-10
sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 139 219 8.0E-10
sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=1 SV=1 139 219 6.0E-09
sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 139 219 9.0E-09
sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 134 210 1.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P41909|PXA1_YEAST Peroxisomal long-chain fatty acid import protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PXA1 PE=1 SV=2 77 208 2.0E-10
sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 139 219 8.0E-10
sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=1 SV=1 139 219 6.0E-09
sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 139 219 9.0E-09
sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 134 210 1.0E-07
sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2 135 210 7.0E-07
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GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0140359 ABC-type transporter activity Yes
GO:0005524 ATP binding Yes
GO:0016021 integral component of membrane Yes
GO:0022857 transmembrane transporter activity No
GO:0015399 primary active transmembrane transporter activity No
GO:0097159 organic cyclic compound binding No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0022804 active transmembrane transporter activity No
GO:0031224 intrinsic component of membrane No
GO:0036094 small molecule binding No
GO:0042626 ATPase-coupled transmembrane transporter activity No
GO:0005488 binding No
GO:0032555 purine ribonucleotide binding No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0051179 localization No
GO:0017076 purine nucleotide binding No
GO:0030554 adenyl nucleotide binding No
GO:1901265 nucleoside phosphate binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0005215 transporter activity No
GO:0043167 ion binding No
GO:0032559 adenyl ribonucleotide binding No
GO:0000166 nucleotide binding No
GO:0043168 anion binding No
GO:0032553 ribonucleotide binding No
GO:0110165 cellular anatomical entity No
GO:0006810 transport No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0140657 ATP-dependent activity No
GO:0097367 carbohydrate derivative binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion|Peroxisome Transmembrane domain|Peroxisomal targeting signal 0.0933 0.1787 0.11 0.0645 0.715 0.0557 0.5816 0.3046 0.391 0.7516

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9030
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2295 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2295
MAAQSNLRRTAAEDALATFVEKWSTLIGGKLRNTSRTARALATLALTLSIVLGAEGTRRRWKRQRLEREQGRKLV
RTNSWLHNKDGSRTIYVPYKQGTSKVTISTTKPLTFEAHRRLFLNPPRVSGLGDGAVPAAHTKPGLNLAFLHQFL
SLMSIMIPRWSSKEAGLLLSHGVFLLLRTYLSLVVARLDGELVRDLVAGNGKAFLWGILKVRCATPPPTCRARHT
FQR*
Coding >Hirsu2|2295
ATGGCTGCGCAATCAAACCTGCGAAGAACGGCGGCCGAGGACGCGCTGGCGACCTTCGTCGAGAAATGGAGCACC
CTCATCGGCGGCAAGCTCCGCAACACTTCGCGCACGGCACGCGCCCTGGCGACCCTCGCCCTTACCTTGTCCATC
GTCCTGGGAGCCGAGGGCACGCGCCGCCGCTGGAAGCGGCAGCGTCTTGAGCGCGAGCAGGGTCGGAAGCTCGTC
CGAACCAACTCGTGGCTGCACAACAAAGACGGCTCGCGCACGATTTACGTCCCCTACAAGCAGGGCACCTCCAAG
GTCACCATCAGCACCACCAAGCCGCTCACCTTCGAGGCCCACCGCCGCCTTTTCCTCAACCCGCCCCGCGTCTCC
GGCCTCGGCGATGGAGCCGTCCCGGCCGCGCACACCAAGCCGGGCCTGAATTTGGCCTTTTTGCACCAGTTCCTG
AGCCTCATGAGCATTATGATACCCCGATGGTCCAGTAAGGAGGCCGGGCTGCTCCTCAGCCACGGCGTCTTCCTC
CTGCTGCGAACGTACCTTTCGTTGGTCGTTGCGCGCTTGGACGGTGAGCTTGTTCGTGATCTCGTCGCCGGCAAC
GGCAAGGCCTTTCTCTGGGGCATCCTCAAGGTACGCTGCGCTACGCCCCCTCCCACTTGCCGGGCACGACATACT
TTCCAGCGCTGA
Transcript >Hirsu2|2295
ATGGCTGCGCAATCAAACCTGCGAAGAACGGCGGCCGAGGACGCGCTGGCGACCTTCGTCGAGAAATGGAGCACC
CTCATCGGCGGCAAGCTCCGCAACACTTCGCGCACGGCACGCGCCCTGGCGACCCTCGCCCTTACCTTGTCCATC
GTCCTGGGAGCCGAGGGCACGCGCCGCCGCTGGAAGCGGCAGCGTCTTGAGCGCGAGCAGGGTCGGAAGCTCGTC
CGAACCAACTCGTGGCTGCACAACAAAGACGGCTCGCGCACGATTTACGTCCCCTACAAGCAGGGCACCTCCAAG
GTCACCATCAGCACCACCAAGCCGCTCACCTTCGAGGCCCACCGCCGCCTTTTCCTCAACCCGCCCCGCGTCTCC
GGCCTCGGCGATGGAGCCGTCCCGGCCGCGCACACCAAGCCGGGCCTGAATTTGGCCTTTTTGCACCAGTTCCTG
AGCCTCATGAGCATTATGATACCCCGATGGTCCAGTAAGGAGGCCGGGCTGCTCCTCAGCCACGGCGTCTTCCTC
CTGCTGCGAACGTACCTTTCGTTGGTCGTTGCGCGCTTGGACGGTGAGCTTGTTCGTGATCTCGTCGCCGGCAAC
GGCAAGGCCTTTCTCTGGGGCATCCTCAAGGTACGCTGCGCTACGCCCCCTCCCACTTGCCGGGCACGACATACT
TTCCAGCGCTGA
Gene >Hirsu2|2295
ATGGCTGCGCAATCAAACCTGCGAAGAACGGCGGCCGAGGACGCGCTGGCGACCTTCGTCGAGAAATGGAGCACC
CTCATCGGCGGCAAGCTCCGCAACACTTCGCGCACGGCACGCGCCCTGGCGACCCTCGCCCTTACCTTGTCCATC
GTCCTGGGAGCCGAGGGCACGCGCCGCCGCTGGAAGCGGCAGCGTCTTGAGCGCGAGCAGGGTCGGAAGCTCGTC
CGAACCAACTCGTGGCTGCACAACAAAGACGGCTCGCGCACGATTTACGTCCCCTACAAGCAGGGCACCTCCAAG
GTCACCATCAGCACCACCAAGCCGCTCACCTTCGAGGCCCACCGCCGCCTTTTCCTCAACCCGCCCCGCGTCTCC
GGCCTCGGCGATGGAGCCGTCCCGGCCGCGCACACCAAGCCGGGCCTGAATTTGGCCTTTTTGCACCAGTTCCTG
AGCCTCATGAGCATTATGATACCCCGATGGTCCAGTAAGGAGGCCGGGCTGCTCCTCAGCCACGGCGTCTTCCTC
CTGCTGCGAACGTACCTTTCGTTGGTCGTTGCGCGCTTGGACGGTGAGCTTGTTCGTGATCTCGTCGCCGGCAAC
GGCAAGGCCTTTCTCTGGGGCATCCTCAAGGTACGCTGCGCTACGCCCCCTCCCACTTGCCGGGCACGACATACT
TTCCAGCGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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