Protein ID | Hirsu2|2288 |
Gene name | |
Location | Contig_154:947..2181 |
Strand | - |
Gene length (bp) | 1234 |
Transcript length (bp) | 579 |
Coding sequence length (bp) | 579 |
Protein length (aa) | 193 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01775 | Ribosomal_L18A | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | 4.4E-53 | 22 | 144 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P0CX23|RL20A_YEAST | 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1 | 19 | 191 | 1.0E-84 |
sp|P0CX24|RL20B_YEAST | 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1 | 19 | 191 | 1.0E-84 |
sp|P0CT69|RL20B_SCHPO | 60S ribosomal protein L20-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2002 PE=1 SV=1 | 22 | 191 | 8.0E-78 |
sp|P0CT68|RL20A_SCHPO | 60S ribosomal protein L20-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2001 PE=1 SV=1 | 22 | 191 | 8.0E-78 |
sp|O57561|RL18A_SALSA | 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1 | 20 | 191 | 1.0E-64 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P0CX23|RL20A_YEAST | 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1 | 19 | 191 | 1.0E-84 |
sp|P0CX24|RL20B_YEAST | 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1 | 19 | 191 | 1.0E-84 |
sp|P0CT69|RL20B_SCHPO | 60S ribosomal protein L20-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2002 PE=1 SV=1 | 22 | 191 | 8.0E-78 |
sp|P0CT68|RL20A_SCHPO | 60S ribosomal protein L20-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2001 PE=1 SV=1 | 22 | 191 | 8.0E-78 |
sp|O57561|RL18A_SALSA | 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1 | 20 | 191 | 1.0E-64 |
sp|Q8WQI7|RL18A_SPOFR | 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1 | 20 | 191 | 3.0E-64 |
sp|Q7ZWJ4|RL18A_DANRE | 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1 | 20 | 191 | 7.0E-64 |
sp|Q90YU9|RL18A_ICTPU | 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1 | 20 | 191 | 2.0E-63 |
sp|P62718|RL18A_RAT | 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1 | 20 | 191 | 2.0E-62 |
sp|P62717|RL18A_MOUSE | 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1 | 20 | 191 | 2.0E-62 |
sp|Q3T003|RL18A_BOVIN | 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1 | 20 | 191 | 2.0E-62 |
sp|Q02543|RL18A_HUMAN | 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2 | 20 | 191 | 2.0E-62 |
sp|P41093|RL18A_DROME | 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1 | 20 | 191 | 7.0E-61 |
sp|O44480|RL18A_CAEEL | 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3 SV=2 | 22 | 190 | 2.0E-55 |
sp|Q54MK8|RL18A_DICDI | 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2 | 22 | 191 | 2.0E-55 |
sp|P51418|R18A2_ARATH | 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2 | 21 | 191 | 1.0E-49 |
sp|Q8L7K0|R18A1_ARATH | 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1 | 21 | 191 | 3.0E-49 |
sp|Q943F3|RL18A_ORYSJ | 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1 | 21 | 191 | 5.0E-49 |
sp|Q9ATF5|RL18A_CASSA | 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1 | 21 | 191 | 7.0E-49 |
sp|Q9LUD4|R18A3_ARATH | 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1 | 21 | 191 | 1.0E-47 |
sp|P0DJ18|RL18A_TETTH | 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A PE=1 SV=1 | 21 | 191 | 2.0E-37 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006412 | translation | Yes |
GO:0003735 | structural constituent of ribosome | Yes |
GO:0005840 | ribosome | Yes |
GO:0034645 | cellular macromolecule biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0043228 | non-membrane-bounded organelle | No |
GO:0009058 | biosynthetic process | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0043226 | organelle | No |
GO:0043232 | intracellular non-membrane-bounded organelle | No |
GO:0019538 | protein metabolic process | No |
GO:0044271 | cellular nitrogen compound biosynthetic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0043229 | intracellular organelle | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0009987 | cellular process | No |
GO:0043043 | peptide biosynthetic process | No |
GO:0005198 | structural molecule activity | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0043603 | cellular amide metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:1901566 | organonitrogen compound biosynthetic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0110165 | cellular anatomical entity | No |
GO:0003674 | molecular_function | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0005575 | cellular_component | No |
GO:0044237 | cellular metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0006518 | peptide metabolic process | No |
GO:0043604 | amide biosynthetic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.5488 | 0.4272 | 0.0318 | 0.1521 | 0.2478 | 0.0073 | 0.0793 | 0.1285 | 0.0207 | 0.0032 |
Orthofinder run ID | 4 |
Orthogroup | 2024 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2288 MTGPEPCRRQSKTLTTVTMGRLQEYEVIGRHLPTEANPTPDMYRMTIFAPNQTVAKSRFWYFLRGLRKVKKATGE IVSVKTLHEKHPQKVKNFGIWIRYDSRSGTHNMYKEYREMSRVDAVEALYADMAARHRARFRSIHILRVVELEKT DDIKRPYIRQLVTKNLSFPLPHRVNKAASKKLFSAQRPSTFA* |
Coding | >Hirsu2|2288 ATGACGGGGCCTGAGCCCTGCAGGCGCCAGTCGAAGACATTGACCACCGTCACCATGGGTCGTCTTCAGGAGTAC GAGGTCATTGGGCGCCATCTGCCCACCGAGGCAAACCCCACCCCGGACATGTACCGGATGACCATCTTCGCCCCT AACCAGACTGTTGCAAAGTCCAGATTTTGGTACTTCTTGCGCGGTCTGCGGAAGGTCAAGAAGGCCACTGGTGAG ATCGTCAGCGTCAAGACGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTCGGTATCTGGATCCGCTACGAC TCGCGGTCCGGCACGCACAACATGTACAAGGAGTACCGTGAAATGTCGCGTGTCGACGCCGTCGAGGCCCTGTAC GCCGACATGGCTGCCCGCCACCGCGCTCGCTTCAGGTCGATCCACATCCTCCGTGTCGTTGAGCTCGAGAAGACC GACGACATCAAGCGTCCGTATATCAGGCAGCTCGTCACCAAGAACCTAAGCTTCCCTCTCCCCCACCGTGTCAAC AAAGCCGCCAGCAAGAAGCTATTCAGCGCGCAGCGACCATCTACCTTCGCTTAG |
Transcript | >Hirsu2|2288 ATGACGGGGCCTGAGCCCTGCAGGCGCCAGTCGAAGACATTGACCACCGTCACCATGGGTCGTCTTCAGGAGTAC GAGGTCATTGGGCGCCATCTGCCCACCGAGGCAAACCCCACCCCGGACATGTACCGGATGACCATCTTCGCCCCT AACCAGACTGTTGCAAAGTCCAGATTTTGGTACTTCTTGCGCGGTCTGCGGAAGGTCAAGAAGGCCACTGGTGAG ATCGTCAGCGTCAAGACGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTCGGTATCTGGATCCGCTACGAC TCGCGGTCCGGCACGCACAACATGTACAAGGAGTACCGTGAAATGTCGCGTGTCGACGCCGTCGAGGCCCTGTAC GCCGACATGGCTGCCCGCCACCGCGCTCGCTTCAGGTCGATCCACATCCTCCGTGTCGTTGAGCTCGAGAAGACC GACGACATCAAGCGTCCGTATATCAGGCAGCTCGTCACCAAGAACCTAAGCTTCCCTCTCCCCCACCGTGTCAAC AAAGCCGCCAGCAAGAAGCTATTCAGCGCGCAGCGACCATCTACCTTCGCTTAG |
Gene | >Hirsu2|2288 ATGACGGGGCCTGAGCCCTGCAGGCGCGTGTGGATTGCCTTCCGAGCCCTCTCCACCCTCCGCACACAAAAATTA TCGCCGTGTCGCTAATTGCATCTTCGACAAACCTTCCCAGTTCGCCAGCAGTCGAAGACATTGACCACCGTCACC GTAAGTCATCATAACGCACCAACTCATGACCGAATAGAACTGACGCAGGATACAGATGGGTAAGTCCCTCTGTCT CTATTCATCCTTGGCCGCCAATCGGTCCCCCCCCGACGTCACCTCCCCGTTTCCGAGACCAAGGCCGACATCATC GCGGTGCGCCGGCACCTCTCGCGATTCCAGCCACCGAGCTCGAGATCCGAGAGTACGAGTACACCATGTATCGAA TTTTTGAAAGACGATCCGGGTGGTACTGCCGTGGCAGCAAGAGGAGGGTCAAGGGAATTGGACGACTGTAATCCT CTAAAACCACACATGTCCAAGAGGGGGGATGCCTCTGCTCGATTCATCTGCAGGCGGAATTGGACTGCGATCAAC GTCCGCCCGCTCACATGTCGAACGAGGATCGCTCAAAACTCGAGCGCAGAAGACTGATTGCTTTCGTCAACAGGT CGTCTTCAGGAGTACGAGGTCATTGGGCGCCATCTGCCCACCGAGGCAAACCCCACCCCGGACATGTACCGGATG ACCATCTTCGCCCCTAACCAGACTGTTGCAAAGTCCAGATTTTGGTACTTCTTGCGCGGTCTGCGGAAGGTCAAG AAGGCCACTGGTGAGATCGTCAGCGTCAAGACGGTATGCGCCACCCGCGCCGTGACCCAACAGGCAGACAAGTAC TCACATTTGCCTGCAGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTCGGTATCTGGATCCGCTACGACTC GCGGTCCGGCACGCACAACATGTACAAGGAGTACCGTGAAATGTCGCGTGTCGACGCCGTCGAGGCCCTGTACGC CGACATGGCTGCCCGCCACCGCGCTCGCTTCAGGTCGATCCACGTACGTGCAAGACGGAATCGCCGCTTCCCAAG AGACTGCTTACTAACAACTAGGTAGATCCTCCGTGTCGTTGAGCTCGAGAAGACCGACGACATCAAGCGTCCGTA TATCAGGCAGCTCGTCACCAAGAACCTAAGCTTCCCTCTCCCCCACCGTGTCAACAAAGCCGCCAGCAAGAAGCT ATTCAGCGCGCAGCGACCATCTACCTTCGCTTAG |