© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2286 |
| Gene name | |
| Location | Contig_1539:411..2486 |
| Strand | + |
| Gene length (bp) | 2075 |
| Transcript length (bp) | 1698 |
| Coding sequence length (bp) | 1698 |
| Protein length (aa) | 566 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03909 | BSD | BSD domain | 6.4E-16 | 110 | 172 |
| PF03909 | BSD | BSD domain | 4.7E-14 | 189 | 244 |
| PF08567 | PH_TFIIH | TFIIH p62 subunit, N-terminal domain | 2.1E-18 | 5 | 76 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P5N7|TFB1_NEUCR | Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 | 6 | 466 | 2.0E-143 |
| sp|O13745|TFB1_SCHPO | RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2 | 6 | 388 | 6.0E-61 |
| sp|P32776|TFB1_YEAST | RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 | 6 | 323 | 6.0E-41 |
| sp|Q9P5N7|TFB1_NEUCR | Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 | 469 | 549 | 4.0E-13 |
| sp|P32780|TF2H1_HUMAN | General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1 | 6 | 413 | 3.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P5N7|TFB1_NEUCR | Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 | 6 | 466 | 2.0E-143 |
| sp|O13745|TFB1_SCHPO | RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2 | 6 | 388 | 6.0E-61 |
| sp|P32776|TFB1_YEAST | RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 | 6 | 323 | 6.0E-41 |
| sp|Q9P5N7|TFB1_NEUCR | Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 | 469 | 549 | 4.0E-13 |
| sp|P32780|TF2H1_HUMAN | General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1 | 6 | 413 | 3.0E-10 |
| sp|Q9DBA9|TF2H1_MOUSE | General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2 | 6 | 413 | 6.0E-09 |
| sp|Q960E8|TF2H1_DROME | General transcription factor IIH subunit 1 OS=Drosophila melanogaster GN=Tfb1 PE=2 SV=1 | 31 | 241 | 4.0E-08 |
| sp|Q55FP1|TF2H1_DICDI | General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1 | 124 | 265 | 1.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.4753 | 0.5904 | 0.0984 | 0.0639 | 0.0925 | 0.0014 | 0.1579 | 0.2495 | 0.173 | 0.0307 |
| Orthofinder run ID | 4 |
| Orthogroup | 2023 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2286 MATPTVTWTPNVEGPQPIFLPVSGITNLQQTPDSSAKVMLKIFEKAQDGADPVTYLFHFNTSEARNEAKSIKDVL SRLLADLRSNDGSIPSASMAFSSAVNSQPSARWFDDSRLKTYIELQQSLMKKDKSLHQTYMEAIATKPESISGAA FNSQFWSTRTNLLRAHAIETNQKRGPYNVLSTVKPRTVDGELKLNISVEQVQMILAQHPLVKRIYNENVPKLSEA DFWSRFFLSQLFKKLRGERVTESDRPDPFFDKYDMNDNTRGSQSKIMAQSVPHIIDLEANEENQGGFKGGNAKDV EMRPRANIPIVKTLNSLSEKIMANVAPSDGTVDHGQSDQWQGHGGRYDAYYEVSLRDLRDDDQEHRLMLNVKDKN NIFSKQDCSPSANTGTFAKQNTADVLSEMRSIMNEAWASNADGSSLLAAVDCDDESDSGDDRQACLRVGCGAAVK AAEKEVLSGILQQRSQKYERAPELQYLAESLKRSGARIAAVADEAETERESTIRKRKQEIRDHFERTGKKIRWKS DMVGGGRHAVLKILQPVLDALDMAQGHYATALAVEDAAGA* |
| Coding | >Hirsu2|2286 ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG |
| Transcript | >Hirsu2|2286 ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG |
| Gene | >Hirsu2|2286 ATGGCAACTCCGGTCGGGCGCACTCTGTTCAAGAAAAAAGATGGCATTCTCACGTTAACGAGCGACCATCAGACC GTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATCACCAGTGCGTTCAAA TACCAGCTGCTACCTTCTCTTGCATATATTGTGTGTTTAATAACTCGGAACGACCCGCAGATCTCCAGCAAACAC CCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCTGACCCTGTGACCTATCTCT TCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTTTCTAGACTATTGGCTGACC TGCGTAGCAACGATGGTAGCATTCCGAGGTCGGCAGTTGGGACACCGTTACCTGCTGGACCCTCAACCCCAATCG GCAATGGCAGCGCCTCGATGGCTTTCTCCAGCGCCGTAAACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTC GACTGAAGACATATATTGAGCTGCAGCAATCCCTCATGAAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGG CGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCTTTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCC TGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGCCCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCG TAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAGGTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGA GAATATACAATGAAAACGTACCGAAACTTTCTGAGGCAGACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCA AGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGCCCCGACCCGTTCTTCGACAAATACGACATGAATGACA ACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGTGTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAA ATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTGGAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAA CGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTCGCGCCATCGGATGGGACCGTTGATCATGGACAAAGTG ACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATATTACGAAGTCTCATTGCGTGACTTGAGAGATGACGACC AAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAACAACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAA ACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTCCTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGG CGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTTGACTGCGACGACGAGAGCGACAGCGGTGACGATAGAC AGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAAGCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGC AGCGGTCACAGAAATACGGTCAGATTAGCGACGGAACATCCCCAATTGGCCTACCTTCTACAATAGCTGACAAGT GTGCCCTGACACACGCCACCTGCATCGAGTTCCTCCATCAATTCTGGAATGCTTTTTTGTCGGCTGAGCCAGAAC GCGCCCCCGAACTGCAGTATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGG CCGAGACTGAGAGAGAGTCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGA AGATTCGGTGGAAGTCGGACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATG CACTGGACATGGCCCAAGGGCATTACGCTACAGCCCTCGCGGTGGAAGGTATACAAATCTCGACTGAGCACTGAG CCGGACATACCGCTACCGCGAGGAATATTCTAGACGCAGCCGGAGCATAG |