Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2286
Gene name
LocationContig_1539:411..2486
Strand+
Gene length (bp)2075
Transcript length (bp)1698
Coding sequence length (bp)1698
Protein length (aa) 566

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03909 BSD BSD domain 6.4E-16 110 172
PF03909 BSD BSD domain 4.7E-14 189 244
PF08567 PH_TFIIH TFIIH p62 subunit, N-terminal domain 2.1E-18 5 76

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9P5N7|TFB1_NEUCR Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 6 466 2.0E-143
sp|O13745|TFB1_SCHPO RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2 6 388 6.0E-61
sp|P32776|TFB1_YEAST RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 6 323 6.0E-41
sp|Q9P5N7|TFB1_NEUCR Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 469 549 4.0E-13
sp|P32780|TF2H1_HUMAN General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1 6 413 3.0E-10
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P5N7|TFB1_NEUCR Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 6 466 2.0E-143
sp|O13745|TFB1_SCHPO RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2 6 388 6.0E-61
sp|P32776|TFB1_YEAST RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 6 323 6.0E-41
sp|Q9P5N7|TFB1_NEUCR Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1 469 549 4.0E-13
sp|P32780|TF2H1_HUMAN General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1 6 413 3.0E-10
sp|Q9DBA9|TF2H1_MOUSE General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2 6 413 6.0E-09
sp|Q960E8|TF2H1_DROME General transcription factor IIH subunit 1 OS=Drosophila melanogaster GN=Tfb1 PE=2 SV=1 31 241 4.0E-08
sp|Q55FP1|TF2H1_DICDI General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1 124 265 1.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.4753 0.5904 0.0984 0.0639 0.0925 0.0014 0.1579 0.2495 0.173 0.0307

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2023
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4141
Ophiocordyceps australis map64 (Brazil) OphauB2|2506
Ophiocordyceps camponoti-floridani Ophcf2|04281
Ophiocordyceps camponoti-rufipedis Ophun1|2098
Ophiocordyceps kimflemingae Ophio5|915
Ophiocordyceps subramaniannii Hirsu2|2286 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2286
MATPTVTWTPNVEGPQPIFLPVSGITNLQQTPDSSAKVMLKIFEKAQDGADPVTYLFHFNTSEARNEAKSIKDVL
SRLLADLRSNDGSIPSASMAFSSAVNSQPSARWFDDSRLKTYIELQQSLMKKDKSLHQTYMEAIATKPESISGAA
FNSQFWSTRTNLLRAHAIETNQKRGPYNVLSTVKPRTVDGELKLNISVEQVQMILAQHPLVKRIYNENVPKLSEA
DFWSRFFLSQLFKKLRGERVTESDRPDPFFDKYDMNDNTRGSQSKIMAQSVPHIIDLEANEENQGGFKGGNAKDV
EMRPRANIPIVKTLNSLSEKIMANVAPSDGTVDHGQSDQWQGHGGRYDAYYEVSLRDLRDDDQEHRLMLNVKDKN
NIFSKQDCSPSANTGTFAKQNTADVLSEMRSIMNEAWASNADGSSLLAAVDCDDESDSGDDRQACLRVGCGAAVK
AAEKEVLSGILQQRSQKYERAPELQYLAESLKRSGARIAAVADEAETERESTIRKRKQEIRDHFERTGKKIRWKS
DMVGGGRHAVLKILQPVLDALDMAQGHYATALAVEDAAGA*
Coding >Hirsu2|2286
ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC
ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT
GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT
TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA
AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG
AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT
TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC
CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG
GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA
GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC
CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT
GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG
GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC
GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT
TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC
AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC
CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT
GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA
GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG
TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG
TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG
GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA
GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG
Transcript >Hirsu2|2286
ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC
ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT
GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT
TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA
AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG
AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT
TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC
CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG
GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA
GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC
CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT
GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG
GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC
GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT
TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC
AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC
CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT
GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA
GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG
TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG
TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG
GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA
GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG
Gene >Hirsu2|2286
ATGGCAACTCCGGTCGGGCGCACTCTGTTCAAGAAAAAAGATGGCATTCTCACGTTAACGAGCGACCATCAGACC
GTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATCACCAGTGCGTTCAAA
TACCAGCTGCTACCTTCTCTTGCATATATTGTGTGTTTAATAACTCGGAACGACCCGCAGATCTCCAGCAAACAC
CCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCTGACCCTGTGACCTATCTCT
TCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTTTCTAGACTATTGGCTGACC
TGCGTAGCAACGATGGTAGCATTCCGAGGTCGGCAGTTGGGACACCGTTACCTGCTGGACCCTCAACCCCAATCG
GCAATGGCAGCGCCTCGATGGCTTTCTCCAGCGCCGTAAACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTC
GACTGAAGACATATATTGAGCTGCAGCAATCCCTCATGAAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGG
CGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCTTTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCC
TGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGCCCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCG
TAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAGGTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGA
GAATATACAATGAAAACGTACCGAAACTTTCTGAGGCAGACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCA
AGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGCCCCGACCCGTTCTTCGACAAATACGACATGAATGACA
ACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGTGTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAA
ATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTGGAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAA
CGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTCGCGCCATCGGATGGGACCGTTGATCATGGACAAAGTG
ACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATATTACGAAGTCTCATTGCGTGACTTGAGAGATGACGACC
AAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAACAACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAA
ACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTCCTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGG
CGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTTGACTGCGACGACGAGAGCGACAGCGGTGACGATAGAC
AGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAAGCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGC
AGCGGTCACAGAAATACGGTCAGATTAGCGACGGAACATCCCCAATTGGCCTACCTTCTACAATAGCTGACAAGT
GTGCCCTGACACACGCCACCTGCATCGAGTTCCTCCATCAATTCTGGAATGCTTTTTTGTCGGCTGAGCCAGAAC
GCGCCCCCGAACTGCAGTATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGG
CCGAGACTGAGAGAGAGTCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGA
AGATTCGGTGGAAGTCGGACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATG
CACTGGACATGGCCCAAGGGCATTACGCTACAGCCCTCGCGGTGGAAGGTATACAAATCTCGACTGAGCACTGAG
CCGGACATACCGCTACCGCGAGGAATATTCTAGACGCAGCCGGAGCATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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