Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|2286
Gene name
Location	Contig_1539:411..2486
Strand	+
Gene length (bp)	2075
Transcript length (bp)	1698
Coding sequence length (bp)	1698
Protein length (aa)	566

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03909	BSD	BSD domain	6.4E-16	110	172
PF03909	BSD	BSD domain	4.7E-14	189	244
PF08567	PH_TFIIH	TFIIH p62 subunit, N-terminal domain	2.1E-18	5	76

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P5N7\|TFB1_NEUCR	Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1	6	466	2.0E-143
sp\|O13745\|TFB1_SCHPO	RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2	6	388	6.0E-61
sp\|P32776\|TFB1_YEAST	RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1	6	323	6.0E-41
sp\|Q9P5N7\|TFB1_NEUCR	Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1	469	549	4.0E-13
sp\|P32780\|TF2H1_HUMAN	General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1	6	413	3.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P5N7\|TFB1_NEUCR	Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1	6	466	2.0E-143
sp\|O13745\|TFB1_SCHPO	RNA polymerase II transcription factor B subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb1 PE=1 SV=2	6	388	6.0E-61
sp\|P32776\|TFB1_YEAST	RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1	6	323	6.0E-41
sp\|Q9P5N7\|TFB1_NEUCR	Putative RNA polymerase II transcription factor B subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B8B20.390 PE=3 SV=1	469	549	4.0E-13
sp\|P32780\|TF2H1_HUMAN	General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1	6	413	3.0E-10
sp\|Q9DBA9\|TF2H1_MOUSE	General transcription factor IIH subunit 1 OS=Mus musculus GN=Gtf2h1 PE=1 SV=2	6	413	6.0E-09
sp\|Q960E8\|TF2H1_DROME	General transcription factor IIH subunit 1 OS=Drosophila melanogaster GN=Tfb1 PE=2 SV=1	31	241	4.0E-08
sp\|Q55FP1\|TF2H1_DICDI	General transcription factor IIH subunit 1 OS=Dictyostelium discoideum GN=gtf2h1 PE=3 SV=1	124	265	1.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|2286 MATPTVTWTPNVEGPQPIFLPVSGITNLQQTPDSSAKVMLKIFEKAQDGADPVTYLFHFNTSEARNEAKSIKDVL SRLLADLRSNDGSIPSASMAFSSAVNSQPSARWFDDSRLKTYIELQQSLMKKDKSLHQTYMEAIATKPESISGAA FNSQFWSTRTNLLRAHAIETNQKRGPYNVLSTVKPRTVDGELKLNISVEQVQMILAQHPLVKRIYNENVPKLSEA DFWSRFFLSQLFKKLRGERVTESDRPDPFFDKYDMNDNTRGSQSKIMAQSVPHIIDLEANEENQGGFKGGNAKDV EMRPRANIPIVKTLNSLSEKIMANVAPSDGTVDHGQSDQWQGHGGRYDAYYEVSLRDLRDDDQEHRLMLNVKDKN NIFSKQDCSPSANTGTFAKQNTADVLSEMRSIMNEAWASNADGSSLLAAVDCDDESDSGDDRQACLRVGCGAAVK AAEKEVLSGILQQRSQKYERAPELQYLAESLKRSGARIAAVADEAETERESTIRKRKQEIRDHFERTGKKIRWKS DMVGGGRHAVLKILQPVLDALDMAQGHYATALAVEDAAGA*
Coding	>Hirsu2\|2286 ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG
Transcript	>Hirsu2\|2286 ATGGCAACTCCGACCGTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATC ACCAATCTCCAGCAAACACCCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCT GACCCTGTGACCTATCTCTTCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTT TCTAGACTATTGGCTGACCTGCGTAGCAACGATGGTAGCATTCCGAGCGCCTCGATGGCTTTCTCCAGCGCCGTA AACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTCGACTGAAGACATATATTGAGCTGCAGCAATCCCTCATG AAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGGCGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCT TTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCCTGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGC CCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCGTAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAG GTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGAGAATATACAATGAAAACGTACCGAAACTTTCTGAGGCA GACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCAAGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGC CCCGACCCGTTCTTCGACAAATACGACATGAATGACAACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGT GTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAAATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTG GAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAACGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTC GCGCCATCGGATGGGACCGTTGATCATGGACAAAGTGACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATAT TACGAAGTCTCATTGCGTGACTTGAGAGATGACGACCAAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAAC AACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAAACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTC CTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGGCGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTT GACTGCGACGACGAGAGCGACAGCGGTGACGATAGACAGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAA GCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGCAGCGGTCACAGAAATACGAACGCGCCCCCGAACTGCAG TATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGGCCGAGACTGAGAGAGAG TCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGAAGATTCGGTGGAAGTCG GACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATGCACTGGACATGGCCCAA GGGCATTACGCTACAGCCCTCGCGGTGGAAGACGCAGCCGGAGCATAG
Gene	>Hirsu2\|2286 ATGGCAACTCCGGTCGGGCGCACTCTGTTCAAGAAAAAAGATGGCATTCTCACGTTAACGAGCGACCATCAGACC GTCACCTGGACACCGAACGTGGAGGGTCCCCAGCCTATCTTCCTTCCAGTTTCCGGAATCACCAGTGCGTTCAAA TACCAGCTGCTACCTTCTCTTGCATATATTGTGTGTTTAATAACTCGGAACGACCCGCAGATCTCCAGCAAACAC CCGACAGCTCCGCAAAGGTGATGCTCAAGATTTTCGAGAAAGCTCAAGACGGAGCTGACCCTGTGACCTATCTCT TCCACTTCAACACCTCGGAGGCTCGGAACGAAGCCAAGTCAATCAAGGACGTTCTTTCTAGACTATTGGCTGACC TGCGTAGCAACGATGGTAGCATTCCGAGGTCGGCAGTTGGGACACCGTTACCTGCTGGACCCTCAACCCCAATCG GCAATGGCAGCGCCTCGATGGCTTTCTCCAGCGCCGTAAACTCGCAGCCGTCGGCACGTTGGTTTGACGACAGTC GACTGAAGACATATATTGAGCTGCAGCAATCCCTCATGAAGAAAGACAAGAGCCTTCATCAGACGTACATGGAGG CGATCGCTACGAAGCCGGAATCCATATCTGGCGCTGCTTTCAACTCTCAGTTCTGGTCCACGCGCACCAATCTCC TGCGAGCGCATGCAATAGAAACCAACCAGAAGAGAGGCCCTTACAACGTGCTGTCGACAGTCAAGCCACGTACCG TAGACGGTGAGCTGAAGCTCAACATCAGCGTGGAGCAGGTCCAGATGATACTAGCCCAGCATCCGCTCGTGAAGA GAATATACAATGAAAACGTACCGAAACTTTCTGAGGCAGACTTCTGGTCTCGTTTCTTTCTCAGCCAGCTATTCA AGAAGCTTCGGGGCGAGCGGGTGACGGAGAGCGACCGCCCCGACCCGTTCTTCGACAAATACGACATGAATGACA ACACGCGAGGCTCACAGAGTAAGATTATGGCTCAAAGTGTTCCGCACATCATCGACCTGGAGGCCAATGAGGAAA ATCAAGGTGGTTTCAAAGGAGGAAATGCCAAAGATGTGGAGATGCGACCCCGTGCGAATATTCCCATCGTGAAAA CGCTTAACAGCCTCAGCGAGAAGATCATGGCCAACGTCGCGCCATCGGATGGGACCGTTGATCATGGACAAAGTG ACCAGTGGCAGGGGCATGGGGGACGCTACGACGCATATTACGAAGTCTCATTGCGTGACTTGAGAGATGACGACC AAGAACATCGCCTTATGCTAAACGTCAAAGACAAGAACAACATCTTTTCCAAGCAGGACTGCTCGCCGTCTGCAA ACACGGGTACTTTCGCAAAGCAGAATACAGCTGACGTCCTGTCCGAGATGAGAAGCATAATGAACGAGGCCTGGG CGAGCAACGCCGATGGCTCCTCTTTGTTAGCGGCAGTTGACTGCGACGACGAGAGCGACAGCGGTGACGATAGAC AGGCGTGCTTGCGCGTCGGCTGTGGGGCAGCCGTCAAAGCAGCAGAAAAGGAAGTTCTGAGCGGTATCCTCCAGC AGCGGTCACAGAAATACGGTCAGATTAGCGACGGAACATCCCCAATTGGCCTACCTTCTACAATAGCTGACAAGT GTGCCCTGACACACGCCACCTGCATCGAGTTCCTCCATCAATTCTGGAATGCTTTTTTGTCGGCTGAGCCAGAAC GCGCCCCCGAACTGCAGTATTTGGCGGAGTCTCTCAAGCGATCGGGCGCACGCATCGCCGCCGTGGCAGATGAGG CCGAGACTGAGAGAGAGTCTACCATTCGTAAGCGAAAGCAGGAGATTCGAGATCATTTCGAGCGCACGGGTAAGA AGATTCGGTGGAAGTCGGACATGGTGGGAGGTGGGCGCCACGCCGTGTTGAAGATACTGCAGCCGGTGCTCGATG CACTGGACATGGCCCAAGGGCATTACGCTACAGCCCTCGCGGTGGAAGGTATACAAATCTCGACTGAGCACTGAG CCGGACATACCGCTACCGCGAGGAATATTCTAGACGCAGCCGGAGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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