Protein ID | Hirsu2|2285 |
Gene name | |
Location | Contig_1538:2356..3951 |
Strand | - |
Gene length (bp) | 1595 |
Transcript length (bp) | 1503 |
Coding sequence length (bp) | 1503 |
Protein length (aa) | 501 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1852 | 0.1839 | 0.2103 | 0.2663 | 0.3756 | 0.0352 | 0.8279 | 0.4908 | 0.4953 | 0.0446 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 36 | 58 | 22 |
2 | 73 | 92 | 19 |
3 | 97 | 119 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2022 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2285 MARSSSTEFFGSQVGGDGVINYAYTDMPGRLLVRDIYYFFVYSWSLPLLLTPMFAYGSDGLDELWPNWPNMLSLA AQLLLVGMQLFFVLALLPLTVLLPIWVAAAVVLAFLALNWAICWLLNGSSILLDSDPEYASARPEHAHEQWLFLN GVAAGKHWTKSNLNRLALTFGRPIKGVHNGTSGIIFDIVECLVQRNFTYATADVRLCFKVLRDVLYDPAKSKVVF IVHSQGGIEGGLVIDWLLQEMPQDLLAKLEVYTFGNAANHFNNPHRHVLSQELTQSGPRAALDTLVTESSVATPA EAEAGGGGGGGGGGYFARDRQSRSRSPSSSRTLPAAEDRAIGHIEHYAHSTDFVALWGVLHFSTNRMASPQLPRF MGRVFKRSSGRGGHLFNQHYLDGMFPLARDPRTGALVGADERNDFMEEPVRVGDEGDAMHGQREAIELAYAVTLG PAAARRALRKKHVRVKDLSRLWGYRNGRSPPDKTPSPLLADGVVRTATPA* |
Coding | >Hirsu2|2285 ATGGCCCGCTCGTCCTCTACCGAGTTCTTCGGCTCCCAGGTCGGCGGCGACGGCGTCATCAACTATGCCTACACC GACATGCCCGGCCGGCTGCTCGTCCGGGACATCTACTACTTCTTCGTCTACTCGTGGTCCCTGCCGCTGCTCCTG ACGCCCATGTTCGCCTATGGCTCCGACGGCCTGGACGAGCTGTGGCCCAACTGGCCCAACATGCTCTCCCTCGCC GCCCAGCTCCTCCTCGTCGGCATGCAGCTCTTCTTCGTCCTCGCCCTGCTGCCGCTGACGGTCCTGCTGCCCATC TGGGTCGCGGCCGCCGTCGTCCTGGCCTTCCTCGCCCTCAACTGGGCCATCTGCTGGCTGCTCAACGGCTCGAGC ATCCTGCTCGACTCGGATCCCGAGTACGCCAGCGCCCGCCCCGAGCACGCCCACGAGCAGTGGCTCTTTCTCAAC GGCGTCGCCGCCGGCAAGCACTGGACCAAGAGCAACCTCAACCGCCTGGCCCTCACCTTCGGCCGGCCCATCAAG GGCGTCCACAACGGCACGTCGGGCATCATCTTCGACATCGTCGAGTGCCTGGTCCAGCGTAACTTCACCTACGCC ACCGCCGACGTCAGGCTCTGCTTCAAGGTGCTGCGCGACGTCCTCTACGACCCGGCCAAGTCCAAGGTCGTCTTC ATCGTCCACTCGCAGGGCGGCATCGAGGGCGGCCTGGTCATCGACTGGCTGCTGCAGGAGATGCCGCAGGACCTG CTGGCCAAGCTCGAGGTCTACACCTTTGGCAACGCGGCCAATCACTTCAACAACCCCCATCGCCACGTCTTGTCG CAGGAGCTGACCCAGTCCGGGCCCCGCGCCGCCCTCGACACCCTCGTGACCGAGTCGAGCGTCGCCACGCCCGCC GAGGCCGAGGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATACTTTGCGCGGGACCGGCAGTCGCGGTCCCGG TCGCCGTCGTCGTCGCGAACGCTGCCGGCGGCCGAGGACCGGGCCATCGGCCACATCGAGCACTACGCACACAGC ACCGACTTCGTCGCCCTCTGGGGCGTCCTGCACTTCTCGACGAACCGCATGGCCTCGCCCCAGCTGCCGCGCTTC ATGGGCCGCGTCTTCAAGCGGTCCTCGGGCCGCGGCGGCCACCTCTTCAACCAGCACTATCTGGACGGCATGTTC CCGCTGGCGCGCGACCCGCGCACGGGCGCCCTGGTCGGCGCCGACGAGCGCAACGACTTCATGGAGGAGCCGGTC CGGGTCGGCGACGAGGGCGACGCCATGCACGGCCAGCGCGAGGCCATCGAGCTCGCCTACGCCGTCACGCTCGGC CCGGCCGCCGCCCGCCGCGCCCTGCGCAAGAAGCACGTCAGGGTCAAGGACCTCAGCCGCCTGTGGGGCTACCGC AACGGCCGCAGCCCGCCCGACAAGACGCCGTCGCCGCTGCTGGCGGACGGCGTGGTGCGGACCGCGACCCCGGCG TGA |
Transcript | >Hirsu2|2285 ATGGCCCGCTCGTCCTCTACCGAGTTCTTCGGCTCCCAGGTCGGCGGCGACGGCGTCATCAACTATGCCTACACC GACATGCCCGGCCGGCTGCTCGTCCGGGACATCTACTACTTCTTCGTCTACTCGTGGTCCCTGCCGCTGCTCCTG ACGCCCATGTTCGCCTATGGCTCCGACGGCCTGGACGAGCTGTGGCCCAACTGGCCCAACATGCTCTCCCTCGCC GCCCAGCTCCTCCTCGTCGGCATGCAGCTCTTCTTCGTCCTCGCCCTGCTGCCGCTGACGGTCCTGCTGCCCATC TGGGTCGCGGCCGCCGTCGTCCTGGCCTTCCTCGCCCTCAACTGGGCCATCTGCTGGCTGCTCAACGGCTCGAGC ATCCTGCTCGACTCGGATCCCGAGTACGCCAGCGCCCGCCCCGAGCACGCCCACGAGCAGTGGCTCTTTCTCAAC GGCGTCGCCGCCGGCAAGCACTGGACCAAGAGCAACCTCAACCGCCTGGCCCTCACCTTCGGCCGGCCCATCAAG GGCGTCCACAACGGCACGTCGGGCATCATCTTCGACATCGTCGAGTGCCTGGTCCAGCGTAACTTCACCTACGCC ACCGCCGACGTCAGGCTCTGCTTCAAGGTGCTGCGCGACGTCCTCTACGACCCGGCCAAGTCCAAGGTCGTCTTC ATCGTCCACTCGCAGGGCGGCATCGAGGGCGGCCTGGTCATCGACTGGCTGCTGCAGGAGATGCCGCAGGACCTG CTGGCCAAGCTCGAGGTCTACACCTTTGGCAACGCGGCCAATCACTTCAACAACCCCCATCGCCACGTCTTGTCG CAGGAGCTGACCCAGTCCGGGCCCCGCGCCGCCCTCGACACCCTCGTGACCGAGTCGAGCGTCGCCACGCCCGCC GAGGCCGAGGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATACTTTGCGCGGGACCGGCAGTCGCGGTCCCGG TCGCCGTCGTCGTCGCGAACGCTGCCGGCGGCCGAGGACCGGGCCATCGGCCACATCGAGCACTACGCACACAGC ACCGACTTCGTCGCCCTCTGGGGCGTCCTGCACTTCTCGACGAACCGCATGGCCTCGCCCCAGCTGCCGCGCTTC ATGGGCCGCGTCTTCAAGCGGTCCTCGGGCCGCGGCGGCCACCTCTTCAACCAGCACTATCTGGACGGCATGTTC CCGCTGGCGCGCGACCCGCGCACGGGCGCCCTGGTCGGCGCCGACGAGCGCAACGACTTCATGGAGGAGCCGGTC CGGGTCGGCGACGAGGGCGACGCCATGCACGGCCAGCGCGAGGCCATCGAGCTCGCCTACGCCGTCACGCTCGGC CCGGCCGCCGCCCGCCGCGCCCTGCGCAAGAAGCACGTCAGGGTCAAGGACCTCAGCCGCCTGTGGGGCTACCGC AACGGCCGCAGCCCGCCCGACAAGACGCCGTCGCCGCTGCTGGCGGACGGCGTGGTGCGGACCGCGACCCCGGCG TGA |
Gene | >Hirsu2|2285 ATGGCCCGCTCGTCCTCTACCGAGTTCTTCGGCTCCCAGGTCGGCGGCGACGGCGTCATCAACTATGCCTACACC GACATGCCCGGCCGGCTGCTCGTCCGGGACATCTACTACTTCTTCGTCTACTCGTGGTCCCTGCCGCTGCTCCTG ACGCCCATGTTCGCCTATGGCTCCGACGGCCTGGACGAGCTGTGGCCCAACTGGCCCAACATGCTCTCCCTCGCC GCCCAGCTCCTCCTCGTCGGCATGCAGCTCTTCTTCGTCCTCGCCCTGCTGCCGCTGACGGTCCTGCTGCCCATC TGGGTCGCGGCCGCCGTCGTCCTGGCCTTCCTCGCCCTCAACTGGGCCATCTGCTGGCTGCTCAACGGCTCGAGC ATCCTGCTCGACTCGGATCCCGAGTACGCCAGCGCCCGCCCCGAGCACGCCCACGAGCAGTGGCTCTTTCTCAAC GGCGTCGCCGCCGGGTAAGTCGACCCCTTCCGGGCCGAGAGCGCCGAAGCCAAGGAGGGGCGGGGAAGGGGGCTG AAATGAAGGAACCCCTTTTCGCGCCGCGCAGCAAGCACTGGACCAAGAGCAACCTCAACCGCCTGGCCCTCACCT TCGGCCGGCCCATCAAGGGCGTCCACAACGGCACGTCGGGCATCATCTTCGACATCGTCGAGTGCCTGGTCCAGC GTAACTTCACCTACGCCACCGCCGACGTCAGGCTCTGCTTCAAGGTGCTGCGCGACGTCCTCTACGACCCGGCCA AGTCCAAGGTCGTCTTCATCGTCCACTCGCAGGGCGGCATCGAGGGCGGCCTGGTCATCGACTGGCTGCTGCAGG AGATGCCGCAGGACCTGCTGGCCAAGCTCGAGGTCTACACCTTTGGCAACGCGGCCAATCACTTCAACAACCCCC ATCGCCACGTCTTGTCGCAGGAGCTGACCCAGTCCGGGCCCCGCGCCGCCCTCGACACCCTCGTGACCGAGTCGA GCGTCGCCACGCCCGCCGAGGCCGAGGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATACTTTGCGCGGGACC GGCAGTCGCGGTCCCGGTCGCCGTCGTCGTCGCGAACGCTGCCGGCGGCCGAGGACCGGGCCATCGGCCACATCG AGCACTACGCACACAGCACCGACTTCGTCGCCCTCTGGGGCGTCCTGCACTTCTCGACGAACCGCATGGCCTCGC CCCAGCTGCCGCGCTTCATGGGCCGCGTCTTCAAGCGGTCCTCGGGCCGCGGCGGCCACCTCTTCAACCAGCACT ATCTGGACGGCATGTTCCCGCTGGCGCGCGACCCGCGCACGGGCGCCCTGGTCGGCGCCGACGAGCGCAACGACT TCATGGAGGAGCCGGTCCGGGTCGGCGACGAGGGCGACGCCATGCACGGCCAGCGCGAGGCCATCGAGCTCGCCT ACGCCGTCACGCTCGGCCCGGCCGCCGCCCGCCGCGCCCTGCGCAAGAAGCACGTCAGGGTCAAGGACCTCAGCC GCCTGTGGGGCTACCGCAACGGCCGCAGCCCGCCCGACAAGACGCCGTCGCCGCTGCTGGCGGACGGCGTGGTGC GGACCGCGACCCCGGCGTGA |