© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|228 |
| Gene name | |
| Location | Contig_104:26501..26771 |
| Strand | - |
| Gene length (bp) | 270 |
| Transcript length (bp) | 270 |
| Coding sequence length (bp) | 270 |
| Protein length (aa) | 90 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.3047 | 0.2077 | 0.361 | 0.3359 | 0.4696 | 0.1823 | 0.7018 | 0.5315 | 0.3952 | 0.1806 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 62 | 80 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 9027 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|228 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|228 MLRTTSRQTVEEIALQMGELRGNASTPRYNTPLPNPFVSDNVTVCVDEHTLFVVEVTWMQRLGGVVVVIGLFVVF AKTLAEDLAGVPLL* |
| Coding | >Hirsu2|228 ATGCTCCGGACGACCTCCCGCCAGACTGTTGAAGAAATAGCTCTGCAGATGGGCGAGCTCCGCGGGAACGCAAGT ACACCGAGGTACAACACACCACTCCCTAACCCATTTGTCTCCGACAACGTCACCGTGTGCGTTGACGAGCACACC CTCTTCGTTGTAGAAGTGACCTGGATGCAGCGTTTGGGTGGCGTCGTCGTCGTTATCGGCCTCTTCGTCGTCTTT GCGAAGACGTTGGCGGAGGATCTTGCCGGCGTCCCGCTTCTGTAG |
| Transcript | >Hirsu2|228 ATGCTCCGGACGACCTCCCGCCAGACTGTTGAAGAAATAGCTCTGCAGATGGGCGAGCTCCGCGGGAACGCAAGT ACACCGAGGTACAACACACCACTCCCTAACCCATTTGTCTCCGACAACGTCACCGTGTGCGTTGACGAGCACACC CTCTTCGTTGTAGAAGTGACCTGGATGCAGCGTTTGGGTGGCGTCGTCGTCGTTATCGGCCTCTTCGTCGTCTTT GCGAAGACGTTGGCGGAGGATCTTGCCGGCGTCCCGCTTCTGTAG |
| Gene | >Hirsu2|228 ATGCTCCGGACGACCTCCCGCCAGACTGTTGAAGAAATAGCTCTGCAGATGGGCGAGCTCCGCGGGAACGCAAGT ACACCGAGGTACAACACACCACTCCCTAACCCATTTGTCTCCGACAACGTCACCGTGTGCGTTGACGAGCACACC CTCTTCGTTGTAGAAGTGACCTGGATGCAGCGTTTGGGTGGCGTCGTCGTCGTTATCGGCCTCTTCGTCGTCTTT GCGAAGACGTTGGCGGAGGATCTTGCCGGCGTCCCGCTTCTGTAG |