© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2276 |
| Gene name | |
| Location | Contig_1531:3805..4873 |
| Strand | + |
| Gene length (bp) | 1068 |
| Transcript length (bp) | 1068 |
| Coding sequence length (bp) | 1068 |
| Protein length (aa) | 356 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.3102 | 0.1021 | 0.0871 | 0.495 | 0.2452 | 0.1433 | 0.4156 | 0.4981 | 0.4891 | 0.0019 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 107 | 129 | 22 |
| 2 | 144 | 166 | 22 |
| 3 | 221 | 243 | 22 |
| 4 | 258 | 280 | 22 |
| 5 | 292 | 314 | 22 |
| 6 | 324 | 346 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4989 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2276 MDSTVAYRMSLVLPPQTPGGGGPRYRVSTSGRPATMLRPQTFWPVDWPAMRQMYESEQTSQPFPDGYDGKPLALP TETEVAAEEDEYGLAEGVRRMLTVFPYRDASWVPAMLFVFGTTAIFVASFFKLMPVVDPGSVFPGEAEVALPVTI AVGAAALISGGGLSILAAFNVNRGPVPVDKAGRPVPGAYHPALLGSREWVWFPGLAELGADFLPNLAFRGGFVAW CGGMTLGVAAVSGLPGVLDPKAADFPRKIDTFILTPLLVGASFIFTGSLMLALASQDRWYKPAVASVAWHASFAN VLAAACLAASASLGLFAKPRLLLAATANSLAGVFFLIGALLQWFVVMKLFPPNPD* |
| Coding | >Hirsu2|2276 ATGGACAGCACGGTGGCGTACCGGATGTCGCTGGTGCTGCCGCCGCAGACGCCCGGCGGCGGCGGCCCGCGGTAC CGGGTGTCGACGAGCGGGCGGCCGGCGACGATGCTGCGGCCGCAGACCTTCTGGCCCGTCGACTGGCCGGCGATG AGGCAGATGTACGAGTCGGAGCAGACGTCGCAGCCGTTCCCGGACGGGTACGACGGCAAGCCGCTGGCGCTGCCG ACGGAGACGGAGGTGGCGGCGGAGGAGGACGAGTACGGGCTGGCGGAGGGGGTGCGGCGGATGCTGACCGTGTTC CCCTACCGCGACGCGTCGTGGGTGCCGGCGATGCTGTTCGTCTTCGGCACCACGGCCATCTTCGTCGCCTCCTTC TTCAAGCTGATGCCCGTCGTCGACCCCGGGTCCGTGTTCCCGGGCGAGGCCGAGGTGGCGCTGCCGGTGACCATC GCCGTCGGCGCCGCGGCCCTCATCTCCGGCGGCGGCCTGTCCATCCTGGCCGCCTTCAACGTCAACCGCGGGCCG GTGCCGGTCGACAAGGCCGGCCGCCCCGTGCCGGGCGCCTACCACCCGGCCCTGCTCGGCAGCCGCGAGTGGGTC TGGTTCCCGGGCCTGGCCGAGCTCGGCGCCGACTTCCTGCCCAACCTGGCCTTCCGCGGCGGCTTCGTCGCCTGG TGCGGCGGCATGACGCTCGGCGTCGCCGCCGTCTCCGGCCTGCCGGGCGTGCTCGACCCCAAGGCCGCCGACTTC CCGCGCAAGATCGACACCTTCATCCTGACCCCGCTGCTCGTCGGCGCCTCCTTCATCTTCACCGGCTCGCTCATG CTCGCCCTCGCCTCCCAGGACCGCTGGTACAAGCCGGCCGTCGCCTCCGTCGCCTGGCACGCCTCCTTCGCCAAC GTCCTGGCCGCCGCCTGCCTGGCCGCCTCGGCCTCGCTCGGCCTCTTCGCCAAGCCGCGCCTGCTGCTGGCCGCC ACCGCAAACTCCCTCGCCGGCGTCTTCTTCCTCATCGGCGCCCTGCTGCAGTGGTTCGTCGTCATGAAGCTGTTC CCCCCCAACCCCGACTGA |
| Transcript | >Hirsu2|2276 ATGGACAGCACGGTGGCGTACCGGATGTCGCTGGTGCTGCCGCCGCAGACGCCCGGCGGCGGCGGCCCGCGGTAC CGGGTGTCGACGAGCGGGCGGCCGGCGACGATGCTGCGGCCGCAGACCTTCTGGCCCGTCGACTGGCCGGCGATG AGGCAGATGTACGAGTCGGAGCAGACGTCGCAGCCGTTCCCGGACGGGTACGACGGCAAGCCGCTGGCGCTGCCG ACGGAGACGGAGGTGGCGGCGGAGGAGGACGAGTACGGGCTGGCGGAGGGGGTGCGGCGGATGCTGACCGTGTTC CCCTACCGCGACGCGTCGTGGGTGCCGGCGATGCTGTTCGTCTTCGGCACCACGGCCATCTTCGTCGCCTCCTTC TTCAAGCTGATGCCCGTCGTCGACCCCGGGTCCGTGTTCCCGGGCGAGGCCGAGGTGGCGCTGCCGGTGACCATC GCCGTCGGCGCCGCGGCCCTCATCTCCGGCGGCGGCCTGTCCATCCTGGCCGCCTTCAACGTCAACCGCGGGCCG GTGCCGGTCGACAAGGCCGGCCGCCCCGTGCCGGGCGCCTACCACCCGGCCCTGCTCGGCAGCCGCGAGTGGGTC TGGTTCCCGGGCCTGGCCGAGCTCGGCGCCGACTTCCTGCCCAACCTGGCCTTCCGCGGCGGCTTCGTCGCCTGG TGCGGCGGCATGACGCTCGGCGTCGCCGCCGTCTCCGGCCTGCCGGGCGTGCTCGACCCCAAGGCCGCCGACTTC CCGCGCAAGATCGACACCTTCATCCTGACCCCGCTGCTCGTCGGCGCCTCCTTCATCTTCACCGGCTCGCTCATG CTCGCCCTCGCCTCCCAGGACCGCTGGTACAAGCCGGCCGTCGCCTCCGTCGCCTGGCACGCCTCCTTCGCCAAC GTCCTGGCCGCCGCCTGCCTGGCCGCCTCGGCCTCGCTCGGCCTCTTCGCCAAGCCGCGCCTGCTGCTGGCCGCC ACCGCAAACTCCCTCGCCGGCGTCTTCTTCCTCATCGGCGCCCTGCTGCAGTGGTTCGTCGTCATGAAGCTGTTC CCCCCCAACCCCGACTGA |
| Gene | >Hirsu2|2276 ATGGACAGCACGGTGGCGTACCGGATGTCGCTGGTGCTGCCGCCGCAGACGCCCGGCGGCGGCGGCCCGCGGTAC CGGGTGTCGACGAGCGGGCGGCCGGCGACGATGCTGCGGCCGCAGACCTTCTGGCCCGTCGACTGGCCGGCGATG AGGCAGATGTACGAGTCGGAGCAGACGTCGCAGCCGTTCCCGGACGGGTACGACGGCAAGCCGCTGGCGCTGCCG ACGGAGACGGAGGTGGCGGCGGAGGAGGACGAGTACGGGCTGGCGGAGGGGGTGCGGCGGATGCTGACCGTGTTC CCCTACCGCGACGCGTCGTGGGTGCCGGCGATGCTGTTCGTCTTCGGCACCACGGCCATCTTCGTCGCCTCCTTC TTCAAGCTGATGCCCGTCGTCGACCCCGGGTCCGTGTTCCCGGGCGAGGCCGAGGTGGCGCTGCCGGTGACCATC GCCGTCGGCGCCGCGGCCCTCATCTCCGGCGGCGGCCTGTCCATCCTGGCCGCCTTCAACGTCAACCGCGGGCCG GTGCCGGTCGACAAGGCCGGCCGCCCCGTGCCGGGCGCCTACCACCCGGCCCTGCTCGGCAGCCGCGAGTGGGTC TGGTTCCCGGGCCTGGCCGAGCTCGGCGCCGACTTCCTGCCCAACCTGGCCTTCCGCGGCGGCTTCGTCGCCTGG TGCGGCGGCATGACGCTCGGCGTCGCCGCCGTCTCCGGCCTGCCGGGCGTGCTCGACCCCAAGGCCGCCGACTTC CCGCGCAAGATCGACACCTTCATCCTGACCCCGCTGCTCGTCGGCGCCTCCTTCATCTTCACCGGCTCGCTCATG CTCGCCCTCGCCTCCCAGGACCGCTGGTACAAGCCGGCCGTCGCCTCCGTCGCCTGGCACGCCTCCTTCGCCAAC GTCCTGGCCGCCGCCTGCCTGGCCGCCTCGGCCTCGCTCGGCCTCTTCGCCAAGCCGCGCCTGCTGCTGGCCGCC ACCGCAAACTCCCTCGCCGGCGTCTTCTTCCTCATCGGCGCCCTGCTGCAGTGGTTCGTCGTCATGAAGCTGTTC CCCCCCAACCCCGACTGA |