© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2260 |
| Gene name | |
| Location | Contig_1529:4418..6036 |
| Strand | + |
| Gene length (bp) | 1618 |
| Transcript length (bp) | 1569 |
| Coding sequence length (bp) | 1569 |
| Protein length (aa) | 523 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04855 | SNF5 | SNF5 / SMARCB1 / INI1 | 2.6E-65 | 152 | 378 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09699|SNF5_SCHPO | SWI/SNF chromatin-remodeling complex subunit snf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf5 PE=1 SV=1 | 102 | 413 | 7.0E-57 |
| sp|P18480|SNF5_YEAST | SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3 | 149 | 415 | 7.0E-44 |
| sp|Q6DFM1|SNF5_XENTR | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1 | 121 | 385 | 7.0E-32 |
| sp|Q6GQ82|SNF5_XENLA | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1 | 121 | 385 | 1.0E-31 |
| sp|Q5U379|SNF5_DANRE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1 | 121 | 385 | 3.0E-31 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09699|SNF5_SCHPO | SWI/SNF chromatin-remodeling complex subunit snf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf5 PE=1 SV=1 | 102 | 413 | 7.0E-57 |
| sp|P18480|SNF5_YEAST | SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3 | 149 | 415 | 7.0E-44 |
| sp|Q6DFM1|SNF5_XENTR | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1 | 121 | 385 | 7.0E-32 |
| sp|Q6GQ82|SNF5_XENLA | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1 | 121 | 385 | 1.0E-31 |
| sp|Q5U379|SNF5_DANRE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1 | 121 | 385 | 3.0E-31 |
| sp|Q5BIN2|SNF5_BOVIN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus GN=SMARCB1 PE=2 SV=1 | 121 | 385 | 7.0E-31 |
| sp|Q9Z0H3|SNF5_MOUSE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Mus musculus GN=Smarcb1 PE=1 SV=1 | 121 | 385 | 8.0E-31 |
| sp|Q12824|SNF5_HUMAN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2 | 121 | 385 | 8.0E-31 |
| sp|Q5ZK40|SNF5_CHICK | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus GN=SMARCB1 PE=2 SV=1 | 121 | 385 | 1.0E-30 |
| sp|O42467|SNF5_TETFL | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1 | 121 | 386 | 2.0E-30 |
| sp|Q9USM3|SFH1_SCHPO | Chromatin structure-remodeling complex subunit sfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfh1 PE=1 SV=1 | 144 | 344 | 3.0E-17 |
| sp|P93045|BSH_ARATH | Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2 | 157 | 319 | 5.0E-16 |
| sp|Q6C9N2|SFH1_YARLI | Chromatin structure-remodeling complex subunit SFH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH1 PE=3 SV=1 | 147 | 386 | 3.0E-15 |
| sp|Q6CSR7|SFH1_KLULA | Chromatin structure-remodeling complex subunit SFH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SFH1 PE=3 SV=1 | 142 | 306 | 6.0E-15 |
| sp|Q6FTV3|SFH1_CANGA | Chromatin structure-remodeling complex subunit SFH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SFH1 PE=3 SV=1 | 150 | 382 | 2.0E-14 |
| sp|Q754R8|SFH1_ASHGO | Chromatin structure-remodeling complex subunit SFH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SFH1 PE=3 SV=1 | 159 | 320 | 3.0E-13 |
| sp|Q06168|SFH1_YEAST | Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFH1 PE=1 SV=1 | 115 | 382 | 7.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000228 | nuclear chromosome | Yes |
| GO:0006338 | chromatin remodeling | Yes |
| GO:0016043 | cellular component organization | No |
| GO:0006325 | chromatin organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0009987 | cellular process | No |
| GO:0005694 | chromosome | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.2301 | 0.9228 | 0.0724 | 0.0721 | 0.1055 | 0.0004 | 0.0227 | 0.0423 | 0.0174 | 0.0004 |
| Orthofinder run ID | 4 |
| Orthogroup | 2011 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2260 MASQPSASAPETGPAMAAATPADDKDATPASASPADMPVRTKESFNRLMVERYTTRDALAAAALGQQLQQTRKTS QEMRDKIQEYRLLRNEYKAWFPPARLYGEGYNGFANGHTENQMQPPSSRIVYPSQRPRPGRRTTPLLKYSRKDML KQAEQHEELVPLRLEVEWDKIRLRDTFTWNLHERILHVELFAAQLVEDMGLKPPAANHVYDQIVHQMREQLNDFY PFAFSEEDALDPELPYSAYKNDEMRILIKLNITIGQHTLVDQFEWEINNPSNSPEEFAANMARDLSLSGEFTTAI AHCIREQTQLFTKSLYSVGHPFDGRPIEDSDLVSAFLQTPLTSVFRPQQQAKEYAPYMYEMSEADLERNEMVFSR EQRRQKRSINRRGGPQLPDLRERQRTIRTLIVSSVLPGAAANVDDSRLYKRVAGAARKRMARDGDLSESDESEDS APESPAPSQLAVGTARTRGMRGAASAAQQRMANLGRSETPEVSAALHHHETRTSRRFREETEEPAHLATTAT* |
| Coding | >Hirsu2|2260 ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGGCGACTACCGCGACCTGA |
| Transcript | >Hirsu2|2260 ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGGCGACTACCGCGACCTGA |
| Gene | >Hirsu2|2260 ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGTGGGTGACGCTCAAGGTCAACAAG GACAAGCTGCGGCGGGTGATGAAGGGCGACTACCGCGACCTGA |