Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2260
Gene name
LocationContig_1529:4418..6036
Strand+
Gene length (bp)1618
Transcript length (bp)1569
Coding sequence length (bp)1569
Protein length (aa) 523

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04855 SNF5 SNF5 / SMARCB1 / INI1 2.6E-65 152 378

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09699|SNF5_SCHPO SWI/SNF chromatin-remodeling complex subunit snf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf5 PE=1 SV=1 102 413 7.0E-57
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3 149 415 7.0E-44
sp|Q6DFM1|SNF5_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1 121 385 7.0E-32
sp|Q6GQ82|SNF5_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1 121 385 1.0E-31
sp|Q5U379|SNF5_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1 121 385 3.0E-31
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Swissprot ID Swissprot Description Start End E-value
sp|Q09699|SNF5_SCHPO SWI/SNF chromatin-remodeling complex subunit snf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf5 PE=1 SV=1 102 413 7.0E-57
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3 149 415 7.0E-44
sp|Q6DFM1|SNF5_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1 121 385 7.0E-32
sp|Q6GQ82|SNF5_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1 121 385 1.0E-31
sp|Q5U379|SNF5_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1 121 385 3.0E-31
sp|Q5BIN2|SNF5_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus GN=SMARCB1 PE=2 SV=1 121 385 7.0E-31
sp|Q9Z0H3|SNF5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Mus musculus GN=Smarcb1 PE=1 SV=1 121 385 8.0E-31
sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2 121 385 8.0E-31
sp|Q5ZK40|SNF5_CHICK SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus GN=SMARCB1 PE=2 SV=1 121 385 1.0E-30
sp|O42467|SNF5_TETFL SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1 121 386 2.0E-30
sp|Q9USM3|SFH1_SCHPO Chromatin structure-remodeling complex subunit sfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfh1 PE=1 SV=1 144 344 3.0E-17
sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2 157 319 5.0E-16
sp|Q6C9N2|SFH1_YARLI Chromatin structure-remodeling complex subunit SFH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH1 PE=3 SV=1 147 386 3.0E-15
sp|Q6CSR7|SFH1_KLULA Chromatin structure-remodeling complex subunit SFH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SFH1 PE=3 SV=1 142 306 6.0E-15
sp|Q6FTV3|SFH1_CANGA Chromatin structure-remodeling complex subunit SFH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SFH1 PE=3 SV=1 150 382 2.0E-14
sp|Q754R8|SFH1_ASHGO Chromatin structure-remodeling complex subunit SFH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SFH1 PE=3 SV=1 159 320 3.0E-13
sp|Q06168|SFH1_YEAST Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFH1 PE=1 SV=1 115 382 7.0E-11
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GO

GO Term Description Terminal node
GO:0000228 nuclear chromosome Yes
GO:0006338 chromatin remodeling Yes
GO:0016043 cellular component organization No
GO:0006325 chromatin organization No
GO:0071840 cellular component organization or biogenesis No
GO:0009987 cellular process No
GO:0005694 chromosome No
GO:0043226 organelle No
GO:0043229 intracellular organelle No
GO:0005575 cellular_component No
GO:0043228 non-membrane-bounded organelle No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0008150 biological_process No
GO:0110165 cellular anatomical entity No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.2301 0.9228 0.0724 0.0721 0.1055 0.0004 0.0227 0.0423 0.0174 0.0004

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2011
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4522
Ophiocordyceps australis map64 (Brazil) OphauB2|4269
Ophiocordyceps camponoti-floridani Ophcf2|06477
Ophiocordyceps camponoti-rufipedis Ophun1|5688
Ophiocordyceps kimflemingae Ophio5|5035
Ophiocordyceps subramaniannii Hirsu2|2260 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2260
MASQPSASAPETGPAMAAATPADDKDATPASASPADMPVRTKESFNRLMVERYTTRDALAAAALGQQLQQTRKTS
QEMRDKIQEYRLLRNEYKAWFPPARLYGEGYNGFANGHTENQMQPPSSRIVYPSQRPRPGRRTTPLLKYSRKDML
KQAEQHEELVPLRLEVEWDKIRLRDTFTWNLHERILHVELFAAQLVEDMGLKPPAANHVYDQIVHQMREQLNDFY
PFAFSEEDALDPELPYSAYKNDEMRILIKLNITIGQHTLVDQFEWEINNPSNSPEEFAANMARDLSLSGEFTTAI
AHCIREQTQLFTKSLYSVGHPFDGRPIEDSDLVSAFLQTPLTSVFRPQQQAKEYAPYMYEMSEADLERNEMVFSR
EQRRQKRSINRRGGPQLPDLRERQRTIRTLIVSSVLPGAAANVDDSRLYKRVAGAARKRMARDGDLSESDESEDS
APESPAPSQLAVGTARTRGMRGAASAAQQRMANLGRSETPEVSAALHHHETRTSRRFREETEEPAHLATTAT*
Coding >Hirsu2|2260
ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG
GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG
GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG
CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG
CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC
GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC
AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC
ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG
CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC
CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG
ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG
TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC
GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG
CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG
GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC
GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC
ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG
AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG
GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG
GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG
ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGGCGACTACCGCGACCTGA
Transcript >Hirsu2|2260
ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG
GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG
GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG
CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG
CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC
GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC
AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC
ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG
CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC
CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG
ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG
TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC
GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG
CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG
GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC
GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC
ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG
AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG
GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG
GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG
ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGGCGACTACCGCGACCTGA
Gene >Hirsu2|2260
ATGGCCTCCCAGCCGTCCGCGTCGGCGCCTGAGACGGGGCCCGCCATGGCGGCCGCGACGCCGGCCGACGACAAG
GACGCGACGCCGGCGTCGGCCTCGCCGGCCGACATGCCCGTCCGCACCAAGGAGTCCTTCAACCGGCTGATGGTG
GAGCGCTACACGACGCGCGACGCCCTGGCCGCCGCCGCCCTCGGCCAGCAGCTGCAGCAGACGCGCAAGACGTCG
CAGGAGATGCGGGACAAGATCCAGGAGTACCGCCTGCTTCGCAACGAGTACAAGGCCTGGTTCCCGCCGGCCAGG
CTCTACGGCGAGGGCTACAACGGCTTCGCCAACGGCCACACCGAGAACCAGATGCAGCCGCCGTCGTCGCGCATC
GTCTACCCGTCCCAGCGGCCGCGTCCCGGCCGGCGGACGACCCCCCTGCTCAAGTACAGCCGCAAGGACATGCTC
AAGCAGGCCGAGCAGCACGAGGAGCTGGTCCCGCTGCGGCTCGAGGTCGAGTGGGACAAGATCCGGCTGCGCGAC
ACCTTCACCTGGAACCTGCACGAGCGCATCCTCCACGTCGAGCTCTTCGCCGCCCAGCTGGTCGAGGACATGGGG
CTCAAGCCGCCGGCCGCCAACCACGTCTACGACCAGATCGTCCACCAGATGCGCGAGCAGCTCAACGACTTCTAC
CCCTTTGCCTTCTCCGAGGAGGACGCGCTCGACCCCGAACTCCCCTACTCCGCCTACAAGAACGACGAGATGCGG
ATCCTCATCAAGCTCAACATCACCATCGGCCAGCACACCCTCGTCGACCAGTTCGAGTGGGAGATCAACAACCCG
TCCAACTCGCCCGAGGAGTTCGCCGCCAACATGGCCCGCGACCTGTCGCTGAGCGGCGAGTTCACGACGGCCATC
GCCCACTGCATCCGCGAGCAGACCCAGCTCTTCACCAAGAGCCTCTACAGCGTCGGCCACCCCTTCGACGGCCGG
CCCATCGAGGACTCGGACCTGGTGTCCGCCTTCCTGCAGACCCCCCTGACCTCCGTCTTCCGACCGCAGCAGCAG
GCCAAGGAGTACGCGCCCTACATGTACGAGATGAGCGAGGCCGACCTGGAGCGGAACGAGATGGTCTTCTCGCGC
GAGCAGCGGCGCCAAAAACGGTCCATCAACCGCCGCGGCGGGCCGCAGCTGCCCGACCTGAGGGAGAGGCAACGC
ACCATCCGCACCCTCATCGTCTCGTCCGTCCTGCCCGGCGCCGCCGCCAACGTCGACGACAGCCGGCTGTACAAG
AGGGTCGCCGGCGCGGCGCGCAAGCGCATGGCCCGCGACGGCGACCTGTCCGAGTCGGACGAGAGCGAGGACTCG
GCCCCCGAGTCGCCCGCCCCGTCGCAGCTGGCCGTCGGCACCGCCCGCACGAGGGGGATGCGCGGCGCCGCCTCG
GCCGCCCAGCAGAGGATGGCCAACCTGGGCCGCTCCGAGACGCCCGAGGTCAGCGCCGCCCTGCACCACCACGAG
ACGAGGACGTCCCGCCGCTTCCGGGAGGAGACGGAGGAGCCGGCCCACCTGTGGGTGACGCTCAAGGTCAACAAG
GACAAGCTGCGGCGGGTGATGAAGGGCGACTACCGCGACCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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