Protein ID | Hirsu2|2255 |
Gene name | |
Location | Contig_1526:5805..6129 |
Strand | - |
Gene length (bp) | 324 |
Transcript length (bp) | 324 |
Coding sequence length (bp) | 324 |
Protein length (aa) | 108 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08510 | PIG-P | PIG-P | 4.1E-23 | 2 | 94 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.2801 | 0.2507 | 0.4417 | 0.1281 | 0.4691 | 0.1575 | 0.6497 | 0.2942 | 0.3376 | 0.0226 |
Orthofinder run ID | 4 |
Orthogroup | 2008 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2255 LSIPAYFVLTLCSIYVALAAYNTEMLTLPLASVETVVDGAGKLAVIDAKGRLRGSSRRERKCESNGRLRWREVWS EGTDAVMDIPLAGVCEVLYGEGRDECAFEDAT* |
Coding | >Hirsu2|2255 CTGTCCATCCCGGCCTACTTCGTCCTGACGCTCTGCTCCATCTACGTCGCGCTCGCGGCCTACAACACGGAGATG CTGACGCTGCCGCTGGCCAGCGTCGAGACCGTCGTCGACGGCGCCGGAAAGCTGGCCGTCATCGACGCCAAGGGC CGCCTGCGCGGCAGCAGCCGCCGCGAGCGCAAGTGCGAGAGCAACGGCCGCCTGCGCTGGCGCGAGGTCTGGAGC GAGGGCACCGACGCCGTCATGGACATTCCCCTCGCCGGCGTGTGCGAGGTCTTGTATGGCGAGGGGCGCGACGAG TGCGCCTTTGAAGATGCGACGTGA |
Transcript | >Hirsu2|2255 CTGTCCATCCCGGCCTACTTCGTCCTGACGCTCTGCTCCATCTACGTCGCGCTCGCGGCCTACAACACGGAGATG CTGACGCTGCCGCTGGCCAGCGTCGAGACCGTCGTCGACGGCGCCGGAAAGCTGGCCGTCATCGACGCCAAGGGC CGCCTGCGCGGCAGCAGCCGCCGCGAGCGCAAGTGCGAGAGCAACGGCCGCCTGCGCTGGCGCGAGGTCTGGAGC GAGGGCACCGACGCCGTCATGGACATTCCCCTCGCCGGCGTGTGCGAGGTCTTGTATGGCGAGGGGCGCGACGAG TGCGCCTTTGAAGATGCGACGTGA |
Gene | >Hirsu2|2255 CTGTCCATCCCGGCCTACTTCGTCCTGACGCTCTGCTCCATCTACGTCGCGCTCGCGGCCTACAACACGGAGATG CTGACGCTGCCGCTGGCCAGCGTCGAGACCGTCGTCGACGGCGCCGGAAAGCTGGCCGTCATCGACGCCAAGGGC CGCCTGCGCGGCAGCAGCCGCCGCGAGCGCAAGTGCGAGAGCAACGGCCGCCTGCGCTGGCGCGAGGTCTGGAGC GAGGGCACCGACGCCGTCATGGACATTCCCCTCGCCGGCGTGTGCGAGGTCTTGTATGGCGAGGGGCGCGACGAG TGCGCCTTTGAAGATGCGACGTGA |