© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2247 |
| Gene name | |
| Location | Contig_1522:4759..5430 |
| Strand | - |
| Gene length (bp) | 671 |
| Transcript length (bp) | 594 |
| Coding sequence length (bp) | 594 |
| Protein length (aa) | 198 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01048 | PNP_UDP_1 | Phosphorylase superfamily | 5.0E-08 | 59 | 146 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0009116 | nucleoside metabolic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0055086 | nucleobase-containing small molecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901657 | glycosyl compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Extracellular | 0.5702 | 0.5159 | 0.6887 | 0.1643 | 0.1908 | 0.0339 | 0.0893 | 0.2069 | 0.2197 | 0.0631 |
| Orthofinder run ID | 4 |
| Orthogroup | 47 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2247 MVILDSPNCYSIGWIAALPIERAVATALLDEHHKAPAGFDQHPSDTNAYTWGKIGAHNIEVAREPRETTDPEVHF GIIASGNQVVADAAARDRMADLVGEACLCFEMEAAGLMASFPCLAVRGISDYADSHENAQWQRYASATAAAYAKD LLGYVPARQLRDTRPAAQAINSSQSSVTDFMLDRPTCYLTHVKWPKT* |
| Coding | >Hirsu2|2247 ATGGTGATACTCGACAGCCCTAACTGCTACTCCATTGGATGGATCGCGGCCTTACCCATCGAGCGAGCCGTGGCC ACGGCTCTGCTCGACGAGCACCATAAAGCGCCCGCTGGCTTCGATCAGCACCCGTCGGACACGAACGCATATACA TGGGGCAAGATCGGTGCGCACAACATAGAGGTGGCACGCGAGCCGCGAGAGACGACAGACCCGGAAGTTCACTTC GGAATCATTGCCTCGGGAAACCAGGTTGTGGCAGATGCCGCGGCTCGTGACCGGATGGCGGACCTGGTAGGCGAG GCGTGTCTCTGTTTCGAGATGGAGGCGGCCGGTCTGATGGCCTCGTTCCCCTGCCTCGCTGTTCGGGGCATCTCC GACTATGCCGACTCGCACGAGAATGCCCAGTGGCAGCGCTACGCGTCGGCGACCGCGGCCGCGTACGCCAAGGAT CTGCTTGGCTACGTCCCGGCCAGGCAGCTCCGAGATACGCGGCCGGCCGCTCAGGCGATCAATTCCAGTCAGTCC TCGGTTACAGACTTCATGTTAGATAGACCAACATGTTATCTAACGCACGTCAAGTGGCCCAAGACGTAA |
| Transcript | >Hirsu2|2247 ATGGTGATACTCGACAGCCCTAACTGCTACTCCATTGGATGGATCGCGGCCTTACCCATCGAGCGAGCCGTGGCC ACGGCTCTGCTCGACGAGCACCATAAAGCGCCCGCTGGCTTCGATCAGCACCCGTCGGACACGAACGCATATACA TGGGGCAAGATCGGTGCGCACAACATAGAGGTGGCACGCGAGCCGCGAGAGACGACAGACCCGGAAGTTCACTTC GGAATCATTGCCTCGGGAAACCAGGTTGTGGCAGATGCCGCGGCTCGTGACCGGATGGCGGACCTGGTAGGCGAG GCGTGTCTCTGTTTCGAGATGGAGGCGGCCGGTCTGATGGCCTCGTTCCCCTGCCTCGCTGTTCGGGGCATCTCC GACTATGCCGACTCGCACGAGAATGCCCAGTGGCAGCGCTACGCGTCGGCGACCGCGGCCGCGTACGCCAAGGAT CTGCTTGGCTACGTCCCGGCCAGGCAGCTCCGAGATACGCGGCCGGCCGCTCAGGCGATCAATTCCAGTCAGTCC TCGGTTACAGACTTCATGTTAGATAGACCAACATGTTATCTAACGCACGTCAAGTGGCCCAAGACGTAA |
| Gene | >Hirsu2|2247 ATGGTGATACTCGACAGCCCTAACTGCTACTCCATTGGATGGATCGCGGCCTTACCCATCGAGCGAGCCGTGGCC ACGGCTCTGCTCGACGAGCACCATAAAGCGCCCGCTGGCTTCGATCAGCACCCGTCGGACACGAACGCATATACA TGGGGCAAGATCGGTGCGCACAACATAGTCGTCGCCTCTCTCCCTGCCGGCATGGCCGGGACCACGCCGGCGGGA TGGCGTGCGCCTCGTGTGACGCGCCCCAGGAGGTGGCACGCGAGCCGCGAGAGACGACAGACCCGGAAGTTCACT TCGGAATCATTGCCTCGGGAAACCAGGTTGTGGCAGATGCCGCGGCTCGTGACCGGATGGCGGACCTGGTAGGCG AGGCGTGTCTCTGTTTCGAGATGGAGGCGGCCGGTCTGATGGCCTCGTTCCCCTGCCTCGCTGTTCGGGGCATCT CCGACTATGCCGACTCGCACGAGAATGCCCAGTGGCAGCGCTACGCGTCGGCGACCGCGGCCGCGTACGCCAAGG ATCTGCTTGGCTACGTCCCGGCCAGGCAGCTCCGAGATACGCGGCCGGCCGCTCAGGCGATCAATTCCAGTCAGT CCTCGGTTACAGACTTCATGTTAGATAGACCAACATGTTATCTAACGCACGTCAAGTGGCCCAAGACGTAA |