Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2237
Gene name
LocationContig_152:13208..15035
Strand-
Gene length (bp)1827
Transcript length (bp)1638
Coding sequence length (bp)1638
Protein length (aa) 546

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04146 YTH YT521-B-like domain 6.8E-68 315 515

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 316 379 1.0E-12
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 315 379 9.0E-12
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 428 517 6.0E-11
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 428 517 1.0E-10
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 316 379 2.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 316 379 1.0E-12
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 315 379 9.0E-12
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 428 517 6.0E-11
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 428 517 1.0E-10
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 316 379 2.0E-10
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 428 517 2.0E-10
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 455 514 5.0E-10
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 316 379 5.0E-10
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 316 379 8.0E-10
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 313 378 5.0E-09
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 313 378 6.0E-09
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 313 378 6.0E-09
sp|Q9BYJ9|YTHD1_HUMAN YTH domain-containing family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1 309 387 1.0E-08
sp|Q0VCZ3|YTHD2_BOVIN YTH domain-containing family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1 311 387 3.0E-08
sp|Q9Y5A9|YTHD2_HUMAN YTH domain-containing family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2 311 387 3.0E-08
sp|Q91YT7|YTHD2_MOUSE YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=1 SV=1 311 387 3.0E-08
sp|Q4R5D9|YTHD2_MACFA YTH domain-containing family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1 311 387 3.0E-08
sp|Q5RFL8|YTHD3_PONAB YTH domain-containing family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1 311 387 4.0E-08
sp|Q7Z739|YTHD3_HUMAN YTH domain-containing family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1 311 387 4.0E-08
sp|Q8BYK6|YTHD3_MOUSE YTH domain-containing family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2 311 387 4.0E-08
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 461 514 5.0E-08
sp|P59326|YTHD1_MOUSE YTH domain-containing family protein 1 OS=Mus musculus GN=Ythdf1 PE=1 SV=1 311 387 6.0E-08
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 459 514 3.0E-07
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 459 514 3.0E-07
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 459 514 4.0E-07
sp|Q06390|MRB1_YEAST Methylated RNA-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO92 PE=1 SV=1 313 387 1.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.592 0.5362 0.1341 0.0266 0.0623 0.0013 0.1406 0.0762 0.0493 0.005

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup407
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7438
Ophiocordyceps australis map64 (Brazil) OphauB2|7806
Ophiocordyceps camponoti-floridani Ophcf2|07380
Ophiocordyceps camponoti-rufipedis Ophun1|3210
Ophiocordyceps kimflemingae Ophio5|5140
Ophiocordyceps subramaniannii Hirsu2|2237 (this protein)
Ophiocordyceps subramaniannii Hirsu2|7705
Ophiocordyceps subramaniannii Hirsu2|8182
Ophiocordyceps subramaniannii Hirsu2|8426

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2237
MTTMANALPTVAYRSGQYPQGAQRYMPTTSPPMVQQMPHMPPFGAPPPMAMGQAYYIHQPQMPQYFGAGHMSPSQ
GPPPMSARQGLAYYPNQMMMNPPQSAFYYTQANPYPGQQQHAASSVVPCHYALGTTQNPDARKPPRPTADGPGVP
AQNSRQGQEEPGSRQSTVRGPPRKPRQSGHAIWIGNLPPQTDLMNLVHHVCKETAGLESLFLISKSNCAFANFKD
ENTCMAAQQKLHDSKFQSVRLVSRLRKNTVEGVSGLTAPTGPAASSVVVAVPADAAHDSPASDPVSPGPAASQAS
KPRTNSAGEGNAQNDRFFILKSLTMEDLELSVRTGIWATQSHNEEALNTAFKNFDHVYLIFSANKSGEYFGYARM
VSEINDDPAAAIEFAPKSQTTSTLDLPKAIPTDATEYAPKGRIIDDSARGTIFWEAEREDSESGSDNVSEVSSNK
STGTEEENKTWGKPFKLEWLSISRLPFYRTRGLRNPWNSNREVKIARDGTELEPSVGRRLIGLFNRVQSPGLAPS
AMGPPMALLQGYGPMRTHGQ*
Coding >Hirsu2|2237
ATGACGACGATGGCCAACGCGCTGCCCACCGTCGCCTACCGATCCGGCCAGTATCCACAAGGAGCCCAGCGGTAC
ATGCCGACCACGTCGCCGCCCATGGTCCAGCAGATGCCGCACATGCCTCCATTCGGGGCTCCTCCCCCGATGGCC
ATGGGCCAGGCCTACTACATCCACCAGCCCCAGATGCCTCAGTACTTTGGTGCCGGCCACATGTCGCCCTCGCAA
GGCCCGCCGCCGATGTCTGCGAGGCAGGGCCTCGCCTACTACCCGAACCAGATGATGATGAACCCTCCGCAGTCC
GCCTTCTACTATACCCAAGCGAACCCCTATCCTGGCCAACAGCAGCATGCCGCGTCGAGCGTGGTACCGTGCCAC
TATGCCCTCGGCACGACGCAGAATCCCGACGCTCGGAAGCCTCCTCGCCCGACGGCGGACGGCCCGGGGGTCCCG
GCCCAGAACTCCAGGCAAGGCCAAGAGGAGCCCGGCAGCCGACAGAGTACGGTCCGCGGACCCCCGAGAAAACCT
CGTCAGAGCGGTCACGCCATCTGGATCGGCAATCTGCCCCCGCAGACCGACCTCATGAATCTGGTCCATCACGTT
TGCAAGGAGACCGCTGGGCTCGAGTCCCTTTTCCTCATATCGAAGAGCAACTGCGCCTTCGCGAATTTCAAAGAC
GAAAACACTTGCATGGCGGCGCAGCAAAAGCTGCACGACTCCAAGTTTCAATCCGTCCGGCTCGTCAGTCGACTG
CGGAAGAATACCGTGGAGGGAGTCTCTGGCCTGACAGCCCCCACGGGCCCGGCGGCGAGCAGCGTCGTCGTTGCC
GTGCCGGCCGACGCGGCGCATGACAGCCCCGCTTCTGACCCCGTCAGCCCGGGCCCAGCCGCTAGCCAGGCCAGC
AAGCCCAGGACGAACTCGGCCGGCGAGGGTAACGCGCAAAACGACCGATTCTTCATACTCAAGAGCTTGACCATG
GAAGATCTCGAGCTGAGCGTGCGGACCGGCATATGGGCAACACAGTCTCACAACGAGGAGGCTCTTAATACGGCG
TTCAAGAATTTCGACCACGTCTATCTGATCTTCTCGGCTAACAAGTCGGGAGAGTATTTTGGCTACGCTCGAATG
GTCTCGGAGATCAACGACGATCCGGCCGCAGCGATCGAGTTTGCGCCGAAATCACAGACGACGAGCACTTTGGAT
CTCCCCAAGGCGATTCCTACGGACGCGACAGAATATGCGCCCAAGGGCAGAATCATCGACGACTCTGCCAGAGGC
ACCATCTTCTGGGAGGCTGAACGGGAGGATTCGGAGAGTGGATCGGATAACGTGAGCGAAGTGTCGAGCAACAAG
AGCACTGGCACGGAGGAAGAGAATAAGACGTGGGGCAAGCCGTTCAAGCTGGAGTGGCTGTCGATCAGCCGGCTG
CCCTTCTACCGCACGCGAGGGCTGAGGAACCCGTGGAACTCGAATCGGGAGGTCAAGATTGCAAGAGATGGAACG
GAGCTGGAGCCGTCGGTCGGCCGCAGACTCATTGGCCTCTTCAACCGGGTGCAGAGCCCAGGCCTGGCCCCGTCG
GCGATGGGTCCGCCCATGGCGCTGCTGCAGGGCTACGGACCCATGAGGACGCATGGTCAATAA
Transcript >Hirsu2|2237
ATGACGACGATGGCCAACGCGCTGCCCACCGTCGCCTACCGATCCGGCCAGTATCCACAAGGAGCCCAGCGGTAC
ATGCCGACCACGTCGCCGCCCATGGTCCAGCAGATGCCGCACATGCCTCCATTCGGGGCTCCTCCCCCGATGGCC
ATGGGCCAGGCCTACTACATCCACCAGCCCCAGATGCCTCAGTACTTTGGTGCCGGCCACATGTCGCCCTCGCAA
GGCCCGCCGCCGATGTCTGCGAGGCAGGGCCTCGCCTACTACCCGAACCAGATGATGATGAACCCTCCGCAGTCC
GCCTTCTACTATACCCAAGCGAACCCCTATCCTGGCCAACAGCAGCATGCCGCGTCGAGCGTGGTACCGTGCCAC
TATGCCCTCGGCACGACGCAGAATCCCGACGCTCGGAAGCCTCCTCGCCCGACGGCGGACGGCCCGGGGGTCCCG
GCCCAGAACTCCAGGCAAGGCCAAGAGGAGCCCGGCAGCCGACAGAGTACGGTCCGCGGACCCCCGAGAAAACCT
CGTCAGAGCGGTCACGCCATCTGGATCGGCAATCTGCCCCCGCAGACCGACCTCATGAATCTGGTCCATCACGTT
TGCAAGGAGACCGCTGGGCTCGAGTCCCTTTTCCTCATATCGAAGAGCAACTGCGCCTTCGCGAATTTCAAAGAC
GAAAACACTTGCATGGCGGCGCAGCAAAAGCTGCACGACTCCAAGTTTCAATCCGTCCGGCTCGTCAGTCGACTG
CGGAAGAATACCGTGGAGGGAGTCTCTGGCCTGACAGCCCCCACGGGCCCGGCGGCGAGCAGCGTCGTCGTTGCC
GTGCCGGCCGACGCGGCGCATGACAGCCCCGCTTCTGACCCCGTCAGCCCGGGCCCAGCCGCTAGCCAGGCCAGC
AAGCCCAGGACGAACTCGGCCGGCGAGGGTAACGCGCAAAACGACCGATTCTTCATACTCAAGAGCTTGACCATG
GAAGATCTCGAGCTGAGCGTGCGGACCGGCATATGGGCAACACAGTCTCACAACGAGGAGGCTCTTAATACGGCG
TTCAAGAATTTCGACCACGTCTATCTGATCTTCTCGGCTAACAAGTCGGGAGAGTATTTTGGCTACGCTCGAATG
GTCTCGGAGATCAACGACGATCCGGCCGCAGCGATCGAGTTTGCGCCGAAATCACAGACGACGAGCACTTTGGAT
CTCCCCAAGGCGATTCCTACGGACGCGACAGAATATGCGCCCAAGGGCAGAATCATCGACGACTCTGCCAGAGGC
ACCATCTTCTGGGAGGCTGAACGGGAGGATTCGGAGAGTGGATCGGATAACGTGAGCGAAGTGTCGAGCAACAAG
AGCACTGGCACGGAGGAAGAGAATAAGACGTGGGGCAAGCCGTTCAAGCTGGAGTGGCTGTCGATCAGCCGGCTG
CCCTTCTACCGCACGCGAGGGCTGAGGAACCCGTGGAACTCGAATCGGGAGGTCAAGATTGCAAGAGATGGAACG
GAGCTGGAGCCGTCGGTCGGCCGCAGACTCATTGGCCTCTTCAACCGGGTGCAGAGCCCAGGCCTGGCCCCGTCG
GCGATGGGTCCGCCCATGGCGCTGCTGCAGGGCTACGGACCCATGAGGACGCATGGTCAATAA
Gene >Hirsu2|2237
ATGACGACGATGGCCAACGCGCTGCCCACCGTCGCCTACCGATCCGGCCAGTATCCACAAGGAGCCCAGCGGTAC
ATGCCGACCACGTCGCCGCCCATGGTCCAGCAGATGCCGCACATGCCTCCATTCGGGGCTCCTCCCCCGATGGCC
ATGGGCCAGGCCTACTACATCCACCAGCCCCAGATGCCTCAGTACTTTGGTGCCGGCCACATGTCGCCCTCGCAA
GGCCCGCCGCCGATGTCTGCGAGGCAGGGCCTCGCCTACTACCCGAACCAGATGATGATGAACCCTCCGCAGTCC
GCCTTCTACTATACCCAAGCGAACCCCTATCCTGGCCAACAGCAGCATGCCGCGTCGAGCGTGGTACCGTGCCAC
TATGCCCTCGGCACGACGCAGAATCCCGACGCTCGGAAGCCTCCTCGCCCGACGGCGGACGGCCCGGGGGTCCCG
GCCCAGAACTCCAGGCAAGGCCAAGGTGAGTGGCCGGCGGCGAAGCGGCATGTGATGACGAGTGCTGAGTGGGTT
GCAGAGGAGCCCGGCAGCCGACAGAGTACGGTCCGCGGACCCCCGAGAAAACCTCGTCAGAGCGGTAAGGGATCC
TCCCTCCCCACCGTCGAAGCAACCGTCGTCGGCGCCGACGGACTGACTGCTGTCCAGGTCACGCCATCTGGATCG
GCAATCTGCCCCCGCAGACCGACCTCATGAATCTGGTCCATCACGTTTGCAAGGAGACCGCTGGGCTCGAGTCCC
TTTTCCTCATATCGAAGAGCAACTGCGCCTTCGCGAATTTCAAAGACGAAAACACTTGCATGGCGGCGCAGCAAA
AGCTGCACGACTCCAAGTTTCAATCCGTCCGGCTCGTCAGTCGACTGCGGAAGAATACCGTGGAGGGAGTCTCTG
GCCTGACAGCCCCCACGGGCCCGGCGGCGAGCAGCGTCGTCGTTGCCGTGCCGGCCGACGCGGCGCATGACAGCC
CCGCTTCTGACCCCGTCAGCCCGGGCCCAGCCGCTAGCCAGGCCAGCAAGCCCAGGACGAACTCGGCCGGCGAGG
GTAACGCGCAAAACGACCGATTCTTCATACTCAAGAGCTTGACCATGGAAGATCTCGAGCTGAGCGTGCGGACCG
GCATATGGGCAACACAGTCTCACAACGAGGAGGCTCTTAATACGGCGTTCAAGGTGAGGGCCCGGGCAACATGGG
GAGGATAGGCGGTCACGAAGAGACTCAGTCTGCTAACTCGCCCAGAATTTCGACCACGTCTATCTGATCTTCTCG
GCTAACAAGTCGGGAGAGTATTTTGGCTACGCTCGAATGGTCTCGGAGATCAACGACGATCCGGCCGCAGCGATC
GAGTTTGCGCCGAAATCACAGACGACGAGCACTTTGGATCTCCCCAAGGCGATTCCTACGGACGCGACAGAATAT
GCGCCCAAGGGCAGAATCATCGACGACTCTGCCAGAGGCACCATCTTCTGGGAGGCTGAACGGGAGGATTCGGAG
AGTGGATCGGATAACGTGAGCGAAGTGTCGAGCAACAAGAGCACTGGCACGGAGGAAGAGAATAAGACGTGGGGC
AAGCCGTTCAAGCTGGAGTGGCTGTCGATCAGCCGGCTGCCCTTCTACCGCACGCGAGGGCTGAGGAACCCGTGG
AACTCGAATCGGGAGGTCAAGATTGCAAGAGATGGAACGGAGCTGGAGCCGTCGGTCGGCCGCAGACTCATTGGC
CTCTTCAACCGGGTGCAGAGCCCAGGCCTGGCCCCGTCGGCGATGGGTCCGCCCATGGCGCTGCTGCAGGGCTAC
GGACCCATGAGGACGCATGGTCAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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