Protein ID | Hirsu2|2225 |
Gene name | |
Location | Contig_1518:228..846 |
Strand | - |
Gene length (bp) | 618 |
Transcript length (bp) | 531 |
Coding sequence length (bp) | 531 |
Protein length (aa) | 177 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11566 | PI31_Prot_N | PI31 proteasome regulator N-terminal | 1.0E-46 | 27 | 170 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6521 | 0.293 | 0.1996 | 0.1977 | 0.3323 | 0.0528 | 0.1493 | 0.2097 | 0.3185 | 0.0107 |
Orthofinder run ID | 4 |
Orthogroup | 6059 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2225 MASPLGAPAVLRRMADALPAHAKGDESSDIASSYELVALLAHAFFCALDFKLCALDEDKPLPATADGRDAAVPER LPAHWNAVFGSLSFVYSHKQSSMRFVIRVDRMGGKVEVRGLAVGDDHIHRFERPVRDIVRSAALPIRITLTPAGD EDRSDLPDKLRAAFLTEQAMAGTPPD* |
Coding | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCCCGCCACGGCAGACGGCCGAGATGCTGCCGTGCCCGAGCGC CTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCGTCGATGCGCTTC GTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGACCACATCCACCGC TTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACGCCCGCCGGCGAC GAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCCGGTACTCCTCCT GACTAG |
Transcript | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCCCGCCACGGCAGACGGCCGAGATGCTGCCGTGCCCGAGCGC CTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCGTCGATGCGCTTC GTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGACCACATCCACCGC TTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACGCCCGCCGGCGAC GAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCCGGTACTCCTCCT GACTAG |
Gene | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCGTACGCCCGCCGTCCTCTCCGCGGCAGTGGCGTCGTGATCA TGTGCTAAGAGCTCGCCCTCGCCCCGGCCCCCGACCTCTCCTGCAGCCGCCACGGCAGACGGCCGAGATGCTGCC GTGCCCGAGCGCCTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCG TCGATGCGCTTCGTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGAC CACATCCACCGCTTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACG CCCGCCGGCGACGAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCC GGTACTCCTCCTGACTAG |