© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2225 |
| Gene name | |
| Location | Contig_1518:228..846 |
| Strand | - |
| Gene length (bp) | 618 |
| Transcript length (bp) | 531 |
| Coding sequence length (bp) | 531 |
| Protein length (aa) | 177 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11566 | PI31_Prot_N | PI31 proteasome regulator N-terminal | 1.0E-46 | 27 | 170 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6521 | 0.293 | 0.1996 | 0.1977 | 0.3323 | 0.0528 | 0.1493 | 0.2097 | 0.3185 | 0.0107 |
| Orthofinder run ID | 4 |
| Orthogroup | 6059 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2225 MASPLGAPAVLRRMADALPAHAKGDESSDIASSYELVALLAHAFFCALDFKLCALDEDKPLPATADGRDAAVPER LPAHWNAVFGSLSFVYSHKQSSMRFVIRVDRMGGKVEVRGLAVGDDHIHRFERPVRDIVRSAALPIRITLTPAGD EDRSDLPDKLRAAFLTEQAMAGTPPD* |
| Coding | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCCCGCCACGGCAGACGGCCGAGATGCTGCCGTGCCCGAGCGC CTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCGTCGATGCGCTTC GTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGACCACATCCACCGC TTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACGCCCGCCGGCGAC GAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCCGGTACTCCTCCT GACTAG |
| Transcript | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCCCGCCACGGCAGACGGCCGAGATGCTGCCGTGCCCGAGCGC CTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCGTCGATGCGCTTC GTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGACCACATCCACCGC TTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACGCCCGCCGGCGAC GAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCCGGTACTCCTCCT GACTAG |
| Gene | >Hirsu2|2225 ATGGCGTCGCCGCTCGGCGCCCCCGCGGTGCTCCGCCGCATGGCCGACGCCCTGCCCGCCCACGCCAAGGGCGAC GAGTCGTCCGACATCGCGAGCTCGTACGAGCTCGTCGCCCTGCTCGCCCACGCCTTCTTCTGCGCCCTCGACTTC AAGCTCTGCGCCCTCGACGAGGATAAGCCCCTTCGTACGCCCGCCGTCCTCTCCGCGGCAGTGGCGTCGTGATCA TGTGCTAAGAGCTCGCCCTCGCCCCGGCCCCCGACCTCTCCTGCAGCCGCCACGGCAGACGGCCGAGATGCTGCC GTGCCCGAGCGCCTGCCCGCGCACTGGAACGCAGTCTTCGGCTCCCTGAGCTTCGTCTACTCCCACAAGCAGTCG TCGATGCGCTTCGTCATCCGCGTCGACCGCATGGGCGGCAAGGTCGAGGTCCGCGGCCTCGCCGTCGGCGACGAC CACATCCACCGCTTCGAGCGCCCCGTCCGCGACATCGTCCGCTCCGCCGCCCTGCCCATCCGCATCACCCTGACG CCCGCCGGCGACGAGGACCGCTCCGACCTACCCGACAAGCTGCGCGCCGCCTTCCTCACCGAACAGGCCATGGCC GGTACTCCTCCTGACTAG |