© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|222 |
| Gene name | |
| Location | Contig_104:7237..9856 |
| Strand | + |
| Gene length (bp) | 2619 |
| Transcript length (bp) | 2484 |
| Coding sequence length (bp) | 2484 |
| Protein length (aa) | 828 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04100 | Vps53_N | Vps53-like, N-terminal | 1.7E-104 | 15 | 389 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5ZLD7|VPS53_CHICK | Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1 | 11 | 708 | 6.0E-117 |
| sp|P87129|VPS53_SCHPO | Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1 | 69 | 709 | 2.0E-110 |
| sp|Q8CCB4|VPS53_MOUSE | Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=1 SV=1 | 11 | 708 | 1.0E-109 |
| sp|Q5VIR6|VPS53_HUMAN | Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1 | 11 | 612 | 1.0E-98 |
| sp|Q5R5J4|VPS53_PONAB | Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1 | 11 | 612 | 1.0E-98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5ZLD7|VPS53_CHICK | Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1 | 11 | 708 | 6.0E-117 |
| sp|P87129|VPS53_SCHPO | Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1 | 69 | 709 | 2.0E-110 |
| sp|Q8CCB4|VPS53_MOUSE | Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=1 SV=1 | 11 | 708 | 1.0E-109 |
| sp|Q5VIR6|VPS53_HUMAN | Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1 | 11 | 612 | 1.0E-98 |
| sp|Q5R5J4|VPS53_PONAB | Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1 | 11 | 612 | 1.0E-98 |
| sp|Q0WQF4|VP53A_ARATH | Vacuolar protein sorting-associated protein 53 A OS=Arabidopsis thaliana GN=VPS53 PE=1 SV=1 | 19 | 714 | 4.0E-86 |
| sp|P34561|VPS53_CAEEL | Vacuolar protein sorting-associated protein 53 homolog OS=Caenorhabditis elegans GN=vps-53 PE=1 SV=4 | 19 | 803 | 4.0E-81 |
| sp|P47061|VPS53_YEAST | Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1 SV=1 | 13 | 611 | 5.0E-57 |
| sp|F4I7Y2|VP53B_ARATH | Vacuolar protein sorting-associated protein 53 B OS=Arabidopsis thaliana GN=At1g50970 PE=2 SV=1 | 49 | 388 | 1.0E-36 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Golgi apparatus | 0.6069 | 0.2521 | 0.3159 | 0.1368 | 0.1261 | 0.0043 | 0.4315 | 0.3589 | 0.6679 | 0.0205 |
| Orthofinder run ID | 4 |
| Orthogroup | 1994 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|222 MNGSSAEAPSLDAADYDPMGHLNLLFSHPSTVSSISQVSKTLRAHQDALSDEIDALELAQAYQPNSSLERMQSAQ AELAQLFRKIETVRSRAIETEQNITSMTADIKRLDGTKRNLTLSMTALKRLQMLTTAYEQLRGLAKTRQYRECAG LLQAVIQLMKHFNSYRSIEQIATLSREVSDLQRELQEQICEDFEMAFARGEVAAKKGMLIEACYVMDALGDSAKS RLLNWYVNTELREYRQVFRGNDEAGSLDNIGRRYAWFKRMMKTHEDEHAALFPAHWRMNELLVTAFCEGTRDDFK GILERSMRRAEGNKVDVNLLLSCLQETLDFEQNLEKRFSNEPRASIDTLSSAEERTHSFGGLISAAFEPYLGLWI ESQEKQLASMIPKYRTQPPIPPDEEFSPQAVMTSAIELFHFYKLTLSQCAKLSPSECLLDLSKTLAKYLDEYAQQ VLLHKLQSGGQQGPSLQDAVLVLNTADFWHLNTNQLEENIKKRIENELVPKVDLTSQSDAFLGVASAAVLALVHM VELDCEGVWREMRNTNWSTMDSAGDQSSYVGELVRHVNDKTQEILGVVAKQQYARAFCDHLVEHLATGYINNIVQ CRPISEVGAQQMLVDKYALTKSFGGLLSYHNPSPNPQPPPSSFVRRVEHSMSRMDPLLKTLQVRAAPPEGLVQAY LIHIADRSDTNFKKILELKGVRKKDQAHLIELFGIHREGSSNDKLTQNSALLTPLMSGSGPGGGAGMGSANVTAA LGDGRFDAGSLGEKFLSAARDIGTGSGDRVTPSGLEKATINENLRSFGKFFKKDFGGFGARFGKRDGSVGAEEGQ QR* |
| Coding | >Hirsu2|222 ATGAATGGAAGCTCGGCGGAGGCTCCCTCTCTGGACGCAGCCGACTACGATCCTATGGGGCACCTCAACCTCCTG TTCTCGCATCCGTCCACCGTCTCCTCGATAAGCCAGGTCTCGAAAACGCTCCGGGCTCACCAAGATGCGCTGTCA GACGAGATCGACGCCCTGGAATTGGCGCAGGCGTACCAGCCTAACTCGAGCCTCGAGCGCATGCAGTCGGCGCAG GCGGAGCTGGCCCAGCTCTTCCGCAAGATAGAGACGGTCCGGTCCCGGGCGATCGAGACGGAGCAGAACATCACG TCGATGACGGCCGACATCAAGAGACTGGACGGCACGAAGCGGAACCTGACGCTCAGCATGACGGCCCTGAAGCGG CTGCAGATGCTGACCACGGCCTACGAGCAGCTACGGGGCCTGGCCAAGACGCGGCAGTACCGGGAATGCGCGGGA CTGCTCCAGGCCGTTATACAGCTCATGAAGCACTTCAACAGTTATCGCAGCATTGAACAGATTGCCACCCTGAGC CGCGAGGTGTCGGACCTGCAGCGCGAACTCCAGGAGCAGATCTGCGAGGACTTCGAAATGGCCTTCGCCAGGGGC GAGGTCGCCGCCAAGAAGGGCATGCTTATTGAGGCTTGCTACGTCATGGACGCCCTGGGAGACTCGGCCAAGTCT CGCCTCCTCAACTGGTACGTCAACACGGAGCTGCGCGAGTACCGGCAGGTATTTCGGGGCAACGACGAGGCCGGC AGCCTCGACAACATCGGGCGACGGTACGCCTGGTTCAAGAGGATGATGAAGACGCACGAGGACGAGCACGCCGCG CTCTTCCCGGCTCACTGGCGGATGAACGAGCTGCTGGTCACGGCCTTTTGCGAGGGCACCCGCGACGACTTCAAG GGCATCCTGGAGCGGAGCATGCGGCGCGCCGAAGGCAACAAGGTCGACGTCAACCTGCTCCTCAGCTGCCTGCAG GAGACGCTCGACTTCGAGCAGAACCTGGAGAAGCGCTTCTCCAACGAGCCGCGCGCCAGCATCGACACGTTGAGC TCGGCGGAGGAAAGGACGCACAGCTTTGGCGGGCTCATCTCCGCCGCCTTCGAGCCCTACCTCGGCCTGTGGATA GAGTCGCAGGAGAAGCAGCTGGCGTCGATGATACCCAAATACCGCACCCAGCCCCCCATCCCGCCGGACGAGGAG TTTTCGCCGCAGGCCGTCATGACCTCGGCCATCGAGCTGTTCCACTTCTACAAGCTTACCCTGTCGCAGTGCGCC AAGCTGTCGCCCAGCGAGTGCTTGCTGGACCTGTCCAAGACGCTGGCCAAGTACCTGGACGAATATGCCCAGCAG GTGCTGCTCCACAAGCTGCAGTCGGGCGGCCAGCAGGGCCCGTCGCTGCAGGACGCGGTGCTGGTCCTGAACACG GCCGACTTTTGGCACCTCAACACGAACCAGCTGGAGGAGAACATCAAGAAGCGGATCGAGAACGAGCTCGTGCCC AAGGTGGACCTGACGTCGCAGTCGGACGCCTTCCTGGGGGTCGCGAGCGCGGCCGTGCTGGCGCTGGTACACATG GTCGAGCTGGACTGCGAAGGGGTGTGGCGGGAGATGCGGAACACGAACTGGAGCACCATGGACAGCGCCGGCGAC CAGAGCTCCTACGTCGGAGAGCTGGTGCGGCACGTCAACGACAAGACGCAGGAGATACTGGGGGTGGTGGCCAAG CAACAGTACGCCAGGGCGTTCTGCGACCACCTGGTGGAACACCTGGCGACGGGCTACATCAACAACATCGTGCAG TGTCGGCCCATCTCCGAGGTCGGCGCGCAGCAGATGCTGGTTGACAAGTACGCCCTGACCAAGTCGTTTGGGGGC CTGCTGTCGTACCACAACCCGTCGCCCAACCCGCAGCCGCCGCCGTCGAGCTTCGTGAGGAGGGTAGAGCACTCG ATGAGCCGGATGGACCCGCTGCTGAAGACACTGCAAGTGCGGGCCGCCCCCCCGGAGGGGCTCGTCCAGGCATAC CTGATCCATATCGCGGATCGGTCCGACACGAACTTCAAGAAGATCCTGGAGCTCAAGGGGGTCCGGAAAAAAGAC CAGGCCCACCTGATCGAGCTGTTCGGCATCCACCGAGAGGGCAGCTCCAACGATAAGCTGACGCAGAACTCGGCG CTCCTGACGCCGCTCATGTCGGGCTCCGGCCCCGGCGGCGGGGCGGGCATGGGCTCGGCCAACGTGACGGCGGCG CTGGGCGACGGCCGCTTCGACGCCGGGTCGCTGGGGGAGAAGTTCCTCAGCGCGGCGCGGGACATCGGCACCGGC AGCGGGGACCGCGTGACGCCGAGCGGGCTGGAGAAGGCGACGATCAACGAGAACCTTCGCAGCTTCGGCAAGTTC TTCAAGAAGGACTTTGGGGGGTTCGGCGCGAGGTTCGGCAAGCGAGACGGGAGCGTCGGCGCCGAGGAAGGGCAG CAGCGGTGA |
| Transcript | >Hirsu2|222 ATGAATGGAAGCTCGGCGGAGGCTCCCTCTCTGGACGCAGCCGACTACGATCCTATGGGGCACCTCAACCTCCTG TTCTCGCATCCGTCCACCGTCTCCTCGATAAGCCAGGTCTCGAAAACGCTCCGGGCTCACCAAGATGCGCTGTCA GACGAGATCGACGCCCTGGAATTGGCGCAGGCGTACCAGCCTAACTCGAGCCTCGAGCGCATGCAGTCGGCGCAG GCGGAGCTGGCCCAGCTCTTCCGCAAGATAGAGACGGTCCGGTCCCGGGCGATCGAGACGGAGCAGAACATCACG TCGATGACGGCCGACATCAAGAGACTGGACGGCACGAAGCGGAACCTGACGCTCAGCATGACGGCCCTGAAGCGG CTGCAGATGCTGACCACGGCCTACGAGCAGCTACGGGGCCTGGCCAAGACGCGGCAGTACCGGGAATGCGCGGGA CTGCTCCAGGCCGTTATACAGCTCATGAAGCACTTCAACAGTTATCGCAGCATTGAACAGATTGCCACCCTGAGC CGCGAGGTGTCGGACCTGCAGCGCGAACTCCAGGAGCAGATCTGCGAGGACTTCGAAATGGCCTTCGCCAGGGGC GAGGTCGCCGCCAAGAAGGGCATGCTTATTGAGGCTTGCTACGTCATGGACGCCCTGGGAGACTCGGCCAAGTCT CGCCTCCTCAACTGGTACGTCAACACGGAGCTGCGCGAGTACCGGCAGGTATTTCGGGGCAACGACGAGGCCGGC AGCCTCGACAACATCGGGCGACGGTACGCCTGGTTCAAGAGGATGATGAAGACGCACGAGGACGAGCACGCCGCG CTCTTCCCGGCTCACTGGCGGATGAACGAGCTGCTGGTCACGGCCTTTTGCGAGGGCACCCGCGACGACTTCAAG GGCATCCTGGAGCGGAGCATGCGGCGCGCCGAAGGCAACAAGGTCGACGTCAACCTGCTCCTCAGCTGCCTGCAG GAGACGCTCGACTTCGAGCAGAACCTGGAGAAGCGCTTCTCCAACGAGCCGCGCGCCAGCATCGACACGTTGAGC TCGGCGGAGGAAAGGACGCACAGCTTTGGCGGGCTCATCTCCGCCGCCTTCGAGCCCTACCTCGGCCTGTGGATA GAGTCGCAGGAGAAGCAGCTGGCGTCGATGATACCCAAATACCGCACCCAGCCCCCCATCCCGCCGGACGAGGAG TTTTCGCCGCAGGCCGTCATGACCTCGGCCATCGAGCTGTTCCACTTCTACAAGCTTACCCTGTCGCAGTGCGCC AAGCTGTCGCCCAGCGAGTGCTTGCTGGACCTGTCCAAGACGCTGGCCAAGTACCTGGACGAATATGCCCAGCAG GTGCTGCTCCACAAGCTGCAGTCGGGCGGCCAGCAGGGCCCGTCGCTGCAGGACGCGGTGCTGGTCCTGAACACG GCCGACTTTTGGCACCTCAACACGAACCAGCTGGAGGAGAACATCAAGAAGCGGATCGAGAACGAGCTCGTGCCC AAGGTGGACCTGACGTCGCAGTCGGACGCCTTCCTGGGGGTCGCGAGCGCGGCCGTGCTGGCGCTGGTACACATG GTCGAGCTGGACTGCGAAGGGGTGTGGCGGGAGATGCGGAACACGAACTGGAGCACCATGGACAGCGCCGGCGAC CAGAGCTCCTACGTCGGAGAGCTGGTGCGGCACGTCAACGACAAGACGCAGGAGATACTGGGGGTGGTGGCCAAG CAACAGTACGCCAGGGCGTTCTGCGACCACCTGGTGGAACACCTGGCGACGGGCTACATCAACAACATCGTGCAG TGTCGGCCCATCTCCGAGGTCGGCGCGCAGCAGATGCTGGTTGACAAGTACGCCCTGACCAAGTCGTTTGGGGGC CTGCTGTCGTACCACAACCCGTCGCCCAACCCGCAGCCGCCGCCGTCGAGCTTCGTGAGGAGGGTAGAGCACTCG ATGAGCCGGATGGACCCGCTGCTGAAGACACTGCAAGTGCGGGCCGCCCCCCCGGAGGGGCTCGTCCAGGCATAC CTGATCCATATCGCGGATCGGTCCGACACGAACTTCAAGAAGATCCTGGAGCTCAAGGGGGTCCGGAAAAAAGAC CAGGCCCACCTGATCGAGCTGTTCGGCATCCACCGAGAGGGCAGCTCCAACGATAAGCTGACGCAGAACTCGGCG CTCCTGACGCCGCTCATGTCGGGCTCCGGCCCCGGCGGCGGGGCGGGCATGGGCTCGGCCAACGTGACGGCGGCG CTGGGCGACGGCCGCTTCGACGCCGGGTCGCTGGGGGAGAAGTTCCTCAGCGCGGCGCGGGACATCGGCACCGGC AGCGGGGACCGCGTGACGCCGAGCGGGCTGGAGAAGGCGACGATCAACGAGAACCTTCGCAGCTTCGGCAAGTTC TTCAAGAAGGACTTTGGGGGGTTCGGCGCGAGGTTCGGCAAGCGAGACGGGAGCGTCGGCGCCGAGGAAGGGCAG CAGCGGTGA |
| Gene | >Hirsu2|222 ATGAATGGAAGCTCGGCGGAGGCTCCCTCTCTGGACGCAGGTAAGACTCCTATCGTCGCGCGCCCGAACCACGAC GGCTGATGGGGGCTCCCGGGCGCAGCCGACTACGATCCTATGGGGCACCTCAACCTCCTGTTCTCGCATCCGTCC ACCGTCTCCTCGATAAGCCAGGTCTCGAAAACGCTCCGGGCTCACCAAGATGCGCTGTCAGACGAGATCGACGCC CTGGAATTGGCGCAGGCGTACCAGCCTAACTCGAGCCTCGAGCGCATGCAGTCGGCGCAGGCGGAGCTGGCCCAG CTCTTCCGCAAGATAGAGACGGTCCGGTCCCGGGCGATCGAGACGGAGCAGAACATCACGTCGATGACGGCCGAC ATCAAGAGACTGGACGGCACGAAGCGGAACCTGACGCTCAGCATGACGGCCCTGAAGCGGCTGCAGATGCTGACC ACGGCCTACGAGCAGCTACGGGGCCTGGCCAAGACGCGGCAGTACCGGGAATGCGCGGGACTGCTCCAGGCCGTT ATACAGCTCATGAAGCACTTCAACAGTTATCGCAGCATTGAACAGATTGCCACCCTGAGCCGCGAGGTGTCGGAC CTGCAGCGCGAACTCCAGGAGCAGATCTGCGAGGACTTCGAAATGGCCTTCGCCAGGGGCGAGGTCGCCGCCAAG AAGGGCATGCTTATTGAGGCTTGCTACGTCATGGACGCCCTGGGAGACTCGGCCAAGTCTCGCCTCCTCAACTGG TACGTCAACACGGAGCTGCGCGAGTACCGGCAGGTATTTCGGGGCAACGACGAGGCCGGCAGCCTCGACAACATC GGGCGACGGTACGCCTGGTTCAAGAGGATGATGAAGACGCACGAGGACGAGCACGCCGCGCTCTTCCCGGCTCAC TGGCGGATGAACGAGCTGCTGGTCACGGCCTTTTGCGAGGGCACCCGCGACGACTTCAAGGGCATCCTGGAGCGG AGCATGCGGCGCGCCGAAGGCAACAAGGTCGACGTCAACCTGCTCCTCAGCTGCCTGCAGGAGACGCTCGACTTC GAGCAGAACCTGGAGAAGCGCTTCTCCAACGAGCCGCGCGCCAGCATCGACACGTTGAGCTCGGCGGAGGAAAGG ACGCACAGCTTTGGCGGGCTCATCTCCGCCGCCTTCGAGCCCTACCTCGGCCTGTGGATAGAGTCGCAGGAGAAG CAGCTGGCGTCGATGATACCCAAATACCGCACCCAGCCCCCCATCCCGCCGGACGAGGAGTTTTCGCCGCAGGCC GTCATGACCTCGGCCATCGAGCTGTTCCACTTCTACAAGCTTACCCTGTCGCAGTGCGCCAAGCTGTCGCCCAGC GAGTGCTTGCTGGACCTGTCCAAGACGCTGGCCAAGTACCTGGACGAATATGCCCAGCAGGTGCTGCTCCACAAG CTGCAGTCGGGCGGCCAGCAGGGCCCGTCGCTGCAGGACGCGGTGCTGGTCCTGAACACGGCCGACTTTTGGCAC CTCAACACGAACCAGCTGGAGGAGAACATCAAGAAGCGGATCGAGAACGAGCTCGTGCCCAAGGTGGACCTGACG TCGCAGTCGGACGCCTTCCTGGGGGTCGCGAGCGCGGCCGTGCTGGCGCTGGTACACATGGTCGAGCTGGACTGC GAAGGGGTGTGGCGGGAGATGCGGAACACGAACTGGAGCACCATGGACAGCGCCGGCGACCAGAGCTCCTACGTC GGAGAGCTGGTGCGGCACGTCAACGACAAGACGCAGGAGATACTGGGGGTGGTGGCCAAGCAACAGTACGCCAGG GCGTTCTGCGACCACCTGGTGGAACACCTGGCGACGGGCTACATCAACAACATCGTGCAGTGTCGGCCCATCTCC GAGGTCGGCGCGCAGCAGGTAAGAGGACAAGGGATGACGGGCCCTTGCGGTCTGCGGAGAGGAGAGTCTGTTCTC GCTGACGACGACGGACAGATGCTGGTTGACAAGTACGCCCTGACCAAGTCGTTTGGGGGCCTGCTGTCGTACCAC AACCCGTCGCCCAACCCGCAGCCGCCGCCGTCGAGCTTCGTGAGGAGGGTAGAGCACTCGATGAGCCGGATGGAC CCGCTGCTGAAGACACTGCAAGTGCGGGCCGCCCCCCCGGAGGGGCTCGTCCAGGCATACCTGATCCATATCGCG GATCGGTCCGACACGAACTTCAAGAAGATCCTGGAGCTCAAGGGGGTCCGGAAAAAAGACCAGGCCCACCTGATC GAGCTGTTCGGCATCCACCGAGAGGGCAGCTCCAACGATAAGCTGACGCAGAACTCGGCGCTCCTGACGCCGCTC ATGTCGGGCTCCGGCCCCGGCGGCGGGGCGGGCATGGGCTCGGCCAACGTGACGGCGGCGCTGGGCGACGGCCGC TTCGACGCCGGGTCGCTGGGGGAGAAGTTCCTCAGCGCGGCGCGGGACATCGGCACCGGCAGCGGGGACCGCGTG ACGCCGAGCGGGCTGGAGAAGGCGACGATCAACGAGAACCTTCGCAGCTTCGGCAAGTTCTTCAAGAAGGACTTT GGGGGGTTCGGCGCGAGGTTCGGCAAGCGAGACGGGAGCGTCGGCGCCGAGGAAGGGCAGCAGCGGTGA |