© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2218 |
| Gene name | |
| Location | Contig_1515:4253..6127 |
| Strand | + |
| Gene length (bp) | 1874 |
| Transcript length (bp) | 1758 |
| Coding sequence length (bp) | 1758 |
| Protein length (aa) | 586 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q2EG98|PK1L3_MOUSE | Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=1 SV=2 | 201 | 578 | 3.0E-11 |
| sp|Q2EG98|PK1L3_MOUSE | Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=1 SV=2 | 239 | 578 | 4.0E-11 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.8102 | 0.3937 | 0.0752 | 0.2408 | 0.0405 | 0.065 | 0.2136 | 0.0596 | 0.5135 | 0.0016 |
| Orthofinder run ID | 4 |
| Orthogroup | 4984 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2218 MSSAPGVQYCPYRTNIDLNNVQYSDFSKVEFYQPDFDSDEELVVDQDNQGSADPWGGDAAGDQPQPQPSSAGPAS SKSKKKGKKDKRKGKEKSSNTLPDDDAVNRGSGDNHVAASGSNKDRKTKKMDSPSLPVEDAQKEAQEAGDDEWAQ MTKKKKKKNKKEKEKGKAKGGKNKGPASGPAAGEAAAGQDAKEEGAEEDLSTEPTETTSDPDAAAQSASEPATPS AEAKAGGDGADADAPEEAAEMSDKPKDAEASAEKPENAEASAEPEDVKPAPDDKPENAEASAEPEDAKPASDEPE DAKPATDDKPGNAEASQSEPSAEQPAAPAEEPAPTADATDATDAVEPSPAESSAPAAESTTVEEQPAKDSPEQPD VSEKIADASEQTADEKPDEKPAPEAAEKPSEDAPDTTDHTAPAEQSEPAGDEEKPSSEAPVSDDAPGSAAPESVH EPEKKGEDSSENPVAAEDKQDVSEEPTGSQDKPDVTEDEANKPHDEPADTPAEPENAPDATAVAAVAADNDDEAD KHDAPADDAAESQEKTESSQEPPESGDEPQATGTDEDAKTEEPVVEDSKADESERRGPKD* |
| Coding | >Hirsu2|2218 ATGAGTTCCGCTCCCGGCGTTCAGTACTGTCCGTACCGGACCAATATTGATTTGAACAATGTCCAGTACTCCGAC TTCTCCAAAGTAGAATTTTATCAGCCCGACTTTGACTCCGATGAGGAACTAGTAGTAGACCAAGACAACCAAGGC TCGGCAGATCCTTGGGGTGGAGATGCCGCGGGAGACCAGCCACAGCCACAACCATCGTCAGCCGGCCCAGCCTCC AGCAAGAGTAAGAAAAAGGGCAAGAAAGACAAACGGAAGGGCAAAGAGAAGAGTTCGAATACACTGCCGGACGAC GACGCAGTCAACCGAGGCAGCGGAGACAACCACGTAGCCGCCTCGGGCAGTAATAAGGACCGGAAAACAAAGAAG ATGGATTCTCCATCACTGCCGGTCGAAGATGCCCAGAAGGAGGCCCAGGAAGCAGGCGACGACGAATGGGCCCAG ATGACGAAGAAGAAGAAGAAGAAGAACAAGAAGGAGAAGGAGAAGGGCAAGGCAAAGGGTGGTAAGAACAAGGGC CCCGCCAGCGGTCCGGCGGCGGGAGAAGCCGCTGCCGGCCAAGATGCAAAGGAGGAAGGGGCGGAGGAGGACCTT TCGACCGAACCGACCGAGACGACTTCAGACCCGGACGCCGCCGCGCAATCGGCATCCGAACCGGCCACGCCGTCT GCCGAAGCAAAGGCCGGCGGCGATGGGGCCGACGCCGATGCTCCCGAAGAGGCTGCCGAAATGTCCGATAAGCCT AAAGATGCGGAAGCGTCTGCTGAGAAGCCGGAGAATGCGGAAGCGTCTGCTGAGCCCGAAGACGTGAAGCCGGCG CCTGATGATAAGCCGGAGAATGCGGAAGCATCTGCTGAGCCCGAAGATGCGAAGCCCGCGTCTGATGAGCCCGAA GATGCGAAGCCAGCAACTGATGATAAGCCGGGGAATGCCGAAGCCAGCCAATCGGAGCCCTCTGCGGAGCAACCC GCTGCTCCGGCTGAGGAACCAGCTCCGACCGCAGACGCCACAGACGCCACGGACGCCGTGGAGCCGTCGCCAGCG GAATCGTCCGCGCCAGCTGCCGAATCTACAACCGTCGAAGAGCAACCTGCCAAAGACTCGCCCGAACAGCCCGAC GTGTCCGAGAAGATAGCTGATGCTTCCGAGCAGACAGCCGATGAGAAGCCTGATGAGAAGCCAGCGCCCGAAGCT GCGGAAAAGCCGAGCGAGGACGCGCCCGACACAACAGATCACACTGCGCCAGCTGAGCAGTCCGAGCCCGCTGGA GATGAAGAGAAGCCCAGTTCTGAGGCGCCGGTATCCGATGATGCGCCCGGGAGTGCTGCCCCAGAGTCGGTCCAC GAGCCCGAGAAAAAGGGGGAAGACTCCTCCGAAAACCCTGTCGCGGCCGAAGACAAGCAAGATGTCTCCGAAGAG CCTACCGGGAGTCAAGACAAGCCCGACGTGACGGAAGACGAGGCCAATAAACCGCACGACGAGCCAGCCGACACG CCAGCGGAGCCCGAGAACGCCCCGGACGCCACCGCCGTAGCAGCTGTTGCCGCCGACAACGACGACGAGGCTGAT AAGCACGATGCCCCGGCAGATGACGCGGCAGAATCTCAAGAAAAGACGGAGAGCTCGCAAGAGCCTCCCGAATCC GGCGATGAGCCTCAGGCAACGGGCACGGACGAGGACGCCAAGACTGAGGAGCCTGTTGTCGAGGACTCCAAGGCC GACGAGTCTGAGCGCCGAGGGCCTAAAGACTAA |
| Transcript | >Hirsu2|2218 ATGAGTTCCGCTCCCGGCGTTCAGTACTGTCCGTACCGGACCAATATTGATTTGAACAATGTCCAGTACTCCGAC TTCTCCAAAGTAGAATTTTATCAGCCCGACTTTGACTCCGATGAGGAACTAGTAGTAGACCAAGACAACCAAGGC TCGGCAGATCCTTGGGGTGGAGATGCCGCGGGAGACCAGCCACAGCCACAACCATCGTCAGCCGGCCCAGCCTCC AGCAAGAGTAAGAAAAAGGGCAAGAAAGACAAACGGAAGGGCAAAGAGAAGAGTTCGAATACACTGCCGGACGAC GACGCAGTCAACCGAGGCAGCGGAGACAACCACGTAGCCGCCTCGGGCAGTAATAAGGACCGGAAAACAAAGAAG ATGGATTCTCCATCACTGCCGGTCGAAGATGCCCAGAAGGAGGCCCAGGAAGCAGGCGACGACGAATGGGCCCAG ATGACGAAGAAGAAGAAGAAGAAGAACAAGAAGGAGAAGGAGAAGGGCAAGGCAAAGGGTGGTAAGAACAAGGGC CCCGCCAGCGGTCCGGCGGCGGGAGAAGCCGCTGCCGGCCAAGATGCAAAGGAGGAAGGGGCGGAGGAGGACCTT TCGACCGAACCGACCGAGACGACTTCAGACCCGGACGCCGCCGCGCAATCGGCATCCGAACCGGCCACGCCGTCT GCCGAAGCAAAGGCCGGCGGCGATGGGGCCGACGCCGATGCTCCCGAAGAGGCTGCCGAAATGTCCGATAAGCCT AAAGATGCGGAAGCGTCTGCTGAGAAGCCGGAGAATGCGGAAGCGTCTGCTGAGCCCGAAGACGTGAAGCCGGCG CCTGATGATAAGCCGGAGAATGCGGAAGCATCTGCTGAGCCCGAAGATGCGAAGCCCGCGTCTGATGAGCCCGAA GATGCGAAGCCAGCAACTGATGATAAGCCGGGGAATGCCGAAGCCAGCCAATCGGAGCCCTCTGCGGAGCAACCC GCTGCTCCGGCTGAGGAACCAGCTCCGACCGCAGACGCCACAGACGCCACGGACGCCGTGGAGCCGTCGCCAGCG GAATCGTCCGCGCCAGCTGCCGAATCTACAACCGTCGAAGAGCAACCTGCCAAAGACTCGCCCGAACAGCCCGAC GTGTCCGAGAAGATAGCTGATGCTTCCGAGCAGACAGCCGATGAGAAGCCTGATGAGAAGCCAGCGCCCGAAGCT GCGGAAAAGCCGAGCGAGGACGCGCCCGACACAACAGATCACACTGCGCCAGCTGAGCAGTCCGAGCCCGCTGGA GATGAAGAGAAGCCCAGTTCTGAGGCGCCGGTATCCGATGATGCGCCCGGGAGTGCTGCCCCAGAGTCGGTCCAC GAGCCCGAGAAAAAGGGGGAAGACTCCTCCGAAAACCCTGTCGCGGCCGAAGACAAGCAAGATGTCTCCGAAGAG CCTACCGGGAGTCAAGACAAGCCCGACGTGACGGAAGACGAGGCCAATAAACCGCACGACGAGCCAGCCGACACG CCAGCGGAGCCCGAGAACGCCCCGGACGCCACCGCCGTAGCAGCTGTTGCCGCCGACAACGACGACGAGGCTGAT AAGCACGATGCCCCGGCAGATGACGCGGCAGAATCTCAAGAAAAGACGGAGAGCTCGCAAGAGCCTCCCGAATCC GGCGATGAGCCTCAGGCAACGGGCACGGACGAGGACGCCAAGACTGAGGAGCCTGTTGTCGAGGACTCCAAGGCC GACGAGTCTGAGCGCCGAGGGCCTAAAGACTAA |
| Gene | >Hirsu2|2218 ATGAGTTCCGCTCCCGGCGTTCAGTACTGTCCGTACCGGACCAATATTGATTTGAACAATGTCCAGTACTCCGAC TTCTCCAAAGTAGAATTTTATCAGCCCGACTTTGACTCCGATGAGGAACTAGTAGTAGACCAAGACAACCAAGGT GAGCACGTTCCGTCCCGGCCCTGCACCAACTGCCGTTGACAAGTAGAAGGCTCGGCAGATCCTTGGGGTGGAGAT GCCGCGGGAGACCAGCCACAGCCACAACCATCGTCAGCCGGCCCAGCCTCCAGCAAGAGTAAGAAAAAGGGCAAG AAAGACAAACGGAAGGGCAAAGAGAAGAGTTCGAATACACTGCCGGACGACGACGCAGTCAACCGAGGCAGCGGA GACAACCACGTAGCCGCCTCGGGCAGTAATAAGGACCGGAAAACAAAGAAGATGGATTCTCCATCACTGCCGGTC GAAGATGCCCAGAAGGAGGCCCAGGAAGCAGGCGACGACGAATGGGCCCAGATGACGAAGAAGAAGAAGAAGAAG AACAAGAAGGAGAAGGAGAAGGGCAAGGCAAAGGGTGGTAAGAACAAGGGCCCCGCCAGCGGTCCGGCGGCGGGA GAAGCCGCTGCCGGCCAAGATGCAAAGGAGGAAGGGGCGGAGGAGGACCTTTCGACCGAACCGACCGAGACGACT TCAGACCCGGACGCCGCCGCGCAATCGGCATCCGAACCGGCCACGCCGTCTGCCGAAGCAAAGGCCGGCGGCGAT GGGGCCGACGCCGATGCTCCCGAAGAGGCTGCCGAAATGTCCGATAAGCCTAAAGATGCGGAAGCGTCTGCTGAG AAGCCGGAGAATGCGGAAGCGTCTGCTGAGCCCGAAGACGTGAAGCCGGCGCCTGATGATAAGCCGGAGAATGCG GAAGCATCTGCTGAGCCCGAAGATGCGAAGCCCGCGTCTGATGAGCCCGAAGATGCGAAGCCAGCAACTGATGAT AAGCCGGGGAATGCCGAAGCCAGCCAATCGGAGCCCTCTGCGGAGCAACCCGCTGCTCCGGCTGAGGAACCAGCT CCGACCGCAGACGCCACAGACGCCACGGACGCCGTGGAGCCGTCGCCAGCGGAATCGTCCGCGCCAGCTGCCGAA TCTACAACCGTCGAAGAGCAACCTGCCAAAGACTCGCCCGAACAGCCCGACGTGTCCGAGAAGATAGCTGATGCT TCCGAGCAGACAGCCGATGAGAAGCCTGATGAGAAGCCAGCGCCCGAAGCTGCGGAAAAGCCGAGCGAGGACGCG CCCGACACAACAGATCACACTGCGCCAGCTGAGCAGTCCGAGCCCGCTGGAGATGAAGAGAAGCCCAGTTCTGAG GCGCCGGTATCCGATGATGCGCCCGGGAGTGCTGCCCCAGAGTCGGTCCACGAGCCCGAGAAAAAGGGGGAAGAC TCCTCCGAAAACCCTGTCGCGGCCGAAGACAAGCAAGATGTCTCCGAAGAGCCTACCGGGAGTCAAGACAAGCCC GACGTGACGGAAGACGAGGCCAATAAACCGCACGACGAGCCAGCCGACACGCCAGCGGAGCCCGAGAACGCCCCG GACGCCACCGCCGTAGCAGCTGTTGCCGCCGACAACGACGACGAGGCTGATAAGCACGATGCCCCGGCAGATGAC GCGGCAGAATCTCAAGAAAAGACGGAGAGCTCGCAAGAGCCTCCCGAATCCGGCGATGAGCCTCAGGCAACGGGC ACGGACGAGGACGCCAAGACTGAGGAGCCTGTTGTCGAGGACTCCAAGGCCGACGAGTCTGAGGTGAAGGACCCC GAGACTGCGGATCCTGCGGCCGAGGTCAATGAGACGACAGCCGACGCGACCAGCGCCGAGGGCCTAAAGACTAA |