© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2215 |
| Gene name | |
| Location | Contig_1514:40..2033 |
| Strand | - |
| Gene length (bp) | 1993 |
| Transcript length (bp) | 1266 |
| Coding sequence length (bp) | 1266 |
| Protein length (aa) | 422 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.1373 | 0.1287 | 0.1375 | 0.6243 | 0.0846 | 0.0071 | 0.4227 | 0.4901 | 0.2914 | 0.0076 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 60 | 82 | 22 |
| 3 | 122 | 144 | 22 |
| 4 | 159 | 181 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7517 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|2215 (this protein) |
| Ophiocordyceps subramaniannii | Hirsu2|6000 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2215 MDLDVSLLYLITFFGIACLALILWTLKLLIRNPAIYYARYVRYPLLVNFRWLRATRLESAMFIVFLLINFGAILI PSFFPGWRQVQTRAALMAIVNTAPLCMGGRAPIVDALNIPRNWYLMLHSWIGVVAITEAATHSIIALSLRPRPGS LTQTGWANVILSAKGMGIVGILPLALHLALRRKHDDRIRDRMQQISVEDMDLWKQAKDSSGNSDLLTRRRSTLAE ERAGLSREYLNRDSAKKVIIFWSLEANSQMEWVKDQVKSLQNLDPANKLLIMWCGYPRPREGFKPFKDSRFWMCL DTGAVLSFDELIVSKIKEERARLPGNMGVIVCGDWSFCNKMRKGTIDSMKGSSISFMETEYHPRRIGSQDIKMEQ LAGRFNDRGRLRRRKNDEEEELRDMANHLSDARTYSVVSSLYSEAA* |
| Coding | >Hirsu2|2215 ATGGACCTTGATGTGAGCTTGCTGTACCTCATTACCTTCTTTGGCATTGCCTGTCTAGCTCTGATCCTTTGGACA CTTAAACTTCTGATTCGCAACCCAGCAATCTACTATGCCAGATACGTTCGGTACCCTCTCCTGGTCAACTTCAGG TGGCTACGCGCGACCCGCCTCGAATCAGCGATGTTCATAGTCTTCCTCCTCATTAACTTCGGCGCTATTCTCATA CCTTCGTTCTTCCCCGGATGGAGGCAGGTTCAAACGAGAGCAGCCTTAATGGCTATCGTGAATACCGCCCCTCTC TGCATGGGTGGTCGGGCGCCTATTGTCGACGCATTGAATATTCCACGCAACTGGTATCTTATGCTACACTCCTGG ATCGGTGTGGTTGCTATCACGGAAGCTGCCACACATTCCATTATTGCTCTGAGCTTAAGGCCAAGGCCAGGCTCT TTGACTCAGACTGGCTGGGCAAATGTTATTCTATCGGCAAAGGGCATGGGCATTGTCGGCATTCTTCCTTTAGCC CTGCACTTGGCATTACGACGGAAACACGACGATCGGATCCGCGACAGAATGCAACAAATTAGCGTGGAAGACATG GATCTGTGGAAACAGGCAAAGGATTCTTCTGGCAACAGTGACTTACTGACTCGGCGGAGAAGCACGTTAGCCGAG GAGCGTGCGGGTCTTTCTCGAGAATATCTTAACCGAGACTCTGCAAAAAAAGTTATTATATTTTGGTCTCTTGAG GCCAATTCGCAGATGGAATGGGTGAAAGATCAGGTTAAATCGTTGCAAAATCTCGATCCGGCAAATAAATTGCTT ATCATGTGGTGCGGATATCCTCGTCCGAGAGAAGGATTTAAGCCTTTCAAGGACTCAAGATTTTGGATGTGCTTG GACACAGGAGCAGTTTTGAGCTTTGACGAATTAATTGTCTCCAAGATCAAAGAAGAGCGAGCGCGCCTACCAGGC AATATGGGAGTGATAGTTTGCGGAGACTGGTCATTCTGCAACAAGATGCGCAAGGGTACCATAGACAGTATGAAG GGTAGCTCAATCTCATTTATGGAGACTGAGTATCACCCCCGCAGAATTGGCAGTCAAGACATCAAGATGGAACAA CTTGCAGGCAGATTCAACGATCGGGGAAGACTCAGGCGGAGAAAGAATGACGAGGAAGAGGAGCTTCGGGACATG GCTAATCACTTGTCGGATGCAAGAACGTACTCCGTGGTCTCTAGCCTTTACTCGGAAGCAGCCTAG |
| Transcript | >Hirsu2|2215 ATGGACCTTGATGTGAGCTTGCTGTACCTCATTACCTTCTTTGGCATTGCCTGTCTAGCTCTGATCCTTTGGACA CTTAAACTTCTGATTCGCAACCCAGCAATCTACTATGCCAGATACGTTCGGTACCCTCTCCTGGTCAACTTCAGG TGGCTACGCGCGACCCGCCTCGAATCAGCGATGTTCATAGTCTTCCTCCTCATTAACTTCGGCGCTATTCTCATA CCTTCGTTCTTCCCCGGATGGAGGCAGGTTCAAACGAGAGCAGCCTTAATGGCTATCGTGAATACCGCCCCTCTC TGCATGGGTGGTCGGGCGCCTATTGTCGACGCATTGAATATTCCACGCAACTGGTATCTTATGCTACACTCCTGG ATCGGTGTGGTTGCTATCACGGAAGCTGCCACACATTCCATTATTGCTCTGAGCTTAAGGCCAAGGCCAGGCTCT TTGACTCAGACTGGCTGGGCAAATGTTATTCTATCGGCAAAGGGCATGGGCATTGTCGGCATTCTTCCTTTAGCC CTGCACTTGGCATTACGACGGAAACACGACGATCGGATCCGCGACAGAATGCAACAAATTAGCGTGGAAGACATG GATCTGTGGAAACAGGCAAAGGATTCTTCTGGCAACAGTGACTTACTGACTCGGCGGAGAAGCACGTTAGCCGAG GAGCGTGCGGGTCTTTCTCGAGAATATCTTAACCGAGACTCTGCAAAAAAAGTTATTATATTTTGGTCTCTTGAG GCCAATTCGCAGATGGAATGGGTGAAAGATCAGGTTAAATCGTTGCAAAATCTCGATCCGGCAAATAAATTGCTT ATCATGTGGTGCGGATATCCTCGTCCGAGAGAAGGATTTAAGCCTTTCAAGGACTCAAGATTTTGGATGTGCTTG GACACAGGAGCAGTTTTGAGCTTTGACGAATTAATTGTCTCCAAGATCAAAGAAGAGCGAGCGCGCCTACCAGGC AATATGGGAGTGATAGTTTGCGGAGACTGGTCATTCTGCAACAAGATGCGCAAGGGTACCATAGACAGTATGAAG GGTAGCTCAATCTCATTTATGGAGACTGAGTATCACCCCCGCAGAATTGGCAGTCAAGACATCAAGATGGAACAA CTTGCAGGCAGATTCAACGATCGGGGAAGACTCAGGCGGAGAAAGAATGACGAGGAAGAGGAGCTTCGGGACATG GCTAATCACTTGTCGGATGCAAGAACGTACTCCGTGGTCTCTAGCCTTTACTCGGAAGCAGCCTAG |
| Gene | >Hirsu2|2215 ATGGACCTTGATGTGAGCTTGCTGTACCTCATTACCTTCTTTGGCATTGCCTGTCTAGCTCTGATCCTTTGGACA CTTAAACTTCTGATTCGCAACCCAGCAATCTACTATGCCAGATACGTTCGGTACCCTCTCCTGGTCAACTTCAGG TGGCTACGCGCGACCCGCCTCGAATCAGCGATGTTCATAGTCTTCCTCCTCATTAACTTCGGCGCTATTCTCATA CCTTCGTTCTTCCCCGGATGGAGGCAGGTTCAAACGAGAGCAGCCTTAATGGCTATCGTGAATACCGCCCCTCTC TGCATGGGTGGTCGGGCGCCTATTGTCGACGCATTGAATATTCCACGCAACTGGTATCTTATGCTACACTCCTGG ATCGGTGTGGTTGCTATCACGGAAGCTGCCACACATTCCATTATTGCTCTGAGCTTAAGGCCAAGGCCAGGCTCT TTGACTCAGACTGGCTGGGCAGTAAGTTTTCGTCTAGCGCTCTTGACACCACCTTCTTGCTCAAATTTGAAGACT TTTGGTTTAATATTAGGCGCACCTCTCACCGCTTTTCCGCTGATCAAGCGGGCTCTTGGAAAGTGGTTTCTCTGG ACGCACAGGGCAGTATCGCTATGTGCACTCTCACTGCTCTTGAACCACGTACTCAATGCTCCATCTACACGATCC AGGGTTCTAATCGGAAGCTCGTGTGGGTTCTGGCTGGCCACAACTGCCTTCCGAGTCGTAAGAATCATATACTAC TGGCATACTGCAGAGATTATCGAGATCTCGGCGACTGCCGATACCGTGCAATTGGAAGTTTATCTCAATCGCCCC ATTCGCCTTCATGCGGGTTGCCACTTCCATATTTTTTTCCCATTTACTTGGTATCCCATGAAAAAAATGATGAAG TACAATCTGATGCATAGCTTCACTGGCGTTGCGTTCTGGCATCCTGCCTATGACAAGTCCCAGTCGGTCTCAAGC TTGAAGTTTTTGCTTTCGCGGCACGGAAGCCATAGAAGTGCAATTTCAAGATTGAAAGAGGGCCAATCGATTCTT TTAGATGGTCCGTATGGACAAGATCTAAACCTGCAAAATTTCCAGAATGTTATTCTATCGGCAAAGGGCATGGGC ATTGTCGGCATTCTTCCTTTAGCCCTGCACTTGGCATTACGACGGAAACACGACGATCGGATCCGCGACAGAATG CAACAAATTAGCGTGGAAGACATGGATCTGTGGAAACAGGCAAAGGATTCTTCTGGCAACAGTGACTTACTGACT CGGCGGAGAAGCACGTTAGCCGAGGAGCGTGCGGGTCTTTCTCGAGAATATCTTAACCGAGACTCTGCAAAAAAA GTTATTATATTTTGGTCTCTTGAGGCCAATTCGCAGATGGAATGGGTGAAAGATCAGGTTAAATCGTTGCAAAAT CTCGATCCGGCAAATGTGAGTGGACTCCAAAATGGCTGTTCGGACATTCAATCATCTAATATCTGGCTAGAAATT GCTTATCATGTGGTGCGGATATCCTCGTCCGAGAGAAGGATTTAAGCCTTTCAAGGACTCAAGATTTTGGATGTG CTTGGACACAGGAGCAGTTTTGAGCTTTGACGAATTAATTGTCTCCAAGATCAAAGAAGAGCGAGCGCGCCTACC AGGCAATATGGGAGTGATAGGTACGTGTATCGGCTTCCACTTACCTGGTCAATCATTCATGCTCGTAGTTTGCGG AGACTGGTCATTCTGCAACAAGATGCGCAAGGGTACCATAGACAGTATGAAGGGTAGCTCAATCTCATTTATGGA GACTGAGTATCACCCCCGCAGAATTGGCAGTCAAGACATCAAGATGGAACAACTTGCAGGCAGATTCAACGATCG GGGAAGACTCAGGCGGAGAAAGAATGACGAGGAAGAGGAGCTTCGGGACATGGCTAATCACTTGTCGGATGCAAG AACGTACTCCGTGGTCTCTAGCCTTTACTCGGAAGCAGCCTAG |