© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|221 |
| Gene name | |
| Location | Contig_104:148..3333 |
| Strand | + |
| Gene length (bp) | 3185 |
| Transcript length (bp) | 3051 |
| Coding sequence length (bp) | 3051 |
| Protein length (aa) | 1017 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00041 | fn3 | Fibronectin type III domain | 3.0E-08 | 2 | 61 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.6992 | 0.3627 | 0.1146 | 0.3361 | 0.0947 | 0.0238 | 0.1927 | 0.1766 | 0.1976 | 0.0656 |
| Orthofinder run ID | 4 |
| Orthogroup | 1991 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|221 METRTDSATLSWTKPVSNRPVQKYLIQVNGVHVGDSPGNETAITVTGLRPNHFYNLRVVAVGPNNFRAGSPVIRL RTFGKDGRPQLGDSRLPTSFVDPDNAHDGSDDENDRPDKPISSLPTVEPLPVLDHNATLSRDSCIAAPGQRRNTL NRRHSPSVASSDQPQARLSASTDPEMSLAELNEKFEGIRKEIDDTLALCAKEAAESQQQEEELKAERDRKRQALK EKEEQTAQLKTMIRVTTEQARAAEKERHKKEQQLKEKESKKAKVRDNITKFDKEVDNMKTDRRGFEVRKAELTRQ RDRDVRKFDNENAELHENCVKLEAELKDKGKQLQDLKAARERLPGADDGRWREEDLRLRRGWENQRRDLHQRLVA ETKNGHILNQHSKDLGDQLSMQQQQAGLSFYNQPASSNIEFEPSPIVPPKRLAPNGTPLLSANMSSPDRIPSAEP TFPGSMDFNAAHVPDLFMDAAADGANELQADMESKGAGGPLSPSAQDLLPSNIFEESEDAEHVESRSPFAPETKA AGEEGPQSPASSNMSFNLISSPHGSANHLPFPQFVEQGDGMSLNAHSSPPTVPATNHSFTNFLLALQRSRGAKAA DAGGPPIGSLKSAQSQSFPSAADDGEDSRRKMILPAWIDRGSMAPDGISSGAPATTSRPLSALRLNAHKGSPVMA VADRDGERSRPASIASADRPRPSTDSSWIWGAPGDPVALQQKNRLWSLGGEGRWQSRSNSRRPSLQGSNVLTTTL ASADDEILGEDELSNPQTMPSQVGVIGSRPPGPSKLHGQRLNPAAPTFMANFFTRKDRDKDRGKDRAKEDKGKGK EVMIPAAEATPSGDDSPSGSRASRDTHSVYTRTSVSESRESLQFDPAGMGTAAELNSPSASSLKDPEKVVRKLFR KGSSSKFSLSSRLGKETGLFKKGPGSAGNSDRNASAEHRSSTGDLDDAGDDIAVLGRSFDSVASSPSLGPSKSRE SREGGRISSWRFSMSSIKKKGRDTPVKEKGGFDVDQAPDEE* |
| Coding | >Hirsu2|221 ATGGAAACCCGGACCGATTCGGCCACGCTCAGCTGGACTAAGCCCGTCTCGAATCGACCCGTTCAGAAATATCTG ATACAAGTCAACGGCGTCCATGTGGGGGATTCGCCGGGCAATGAGACCGCCATTACTGTCACCGGTCTGCGCCCC AATCACTTCTACAACCTGCGAGTCGTCGCCGTCGGCCCCAATAACTTCCGCGCCGGGAGTCCCGTCATCCGCCTT CGAACCTTCGGCAAGGACGGCAGGCCTCAGCTGGGGGACTCACGCCTGCCCACCAGCTTTGTCGACCCCGACAAT GCGCACGATGGCAGTGACGACGAAAACGACAGGCCCGACAAGCCCATATCCTCGCTGCCCACCGTGGAGCCTCTA CCCGTTCTGGACCACAATGCGACTCTATCGCGAGACTCGTGCATCGCCGCCCCGGGGCAACGTCGAAATACCCTC AACCGCCGACATTCGCCGTCGGTTGCCAGTTCCGATCAGCCCCAGGCTAGACTCTCAGCCTCCACCGATCCCGAG ATGTCCTTGGCGGAGCTTAACGAAAAGTTTGAAGGGATCCGCAAAGAAATCGACGACACCTTGGCTCTCTGTGCC AAGGAAGCGGCCGAGTCGCAACAACAAGAGGAGGAGCTCAAGGCGGAAAGGGACCGCAAGCGGCAAGCCCTCAAG GAGAAGGAAGAGCAGACCGCGCAGCTCAAGACGATGATTAGAGTCACGACGGAGCAGGCGCGCGCCGCGGAAAAG GAGCGGCACAAGAAGGAGCAGCAACTTAAGGAGAAGGAGAGCAAGAAGGCCAAGGTCCGCGACAATATCACTAAG TTTGACAAAGAAGTGGACAACATGAAGACGGATCGCCGGGGCTTTGAAGTGCGCAAGGCGGAACTGACCCGACAA CGGGACCGCGACGTTCGCAAGTTCGATAACGAAAACGCGGAGCTTCACGAAAATTGCGTCAAGCTCGAGGCTGAG CTCAAGGACAAGGGGAAGCAGCTGCAGGATCTGAAGGCTGCCAGGGAGCGACTGCCCGGCGCTGACGACGGCAGG TGGAGGGAGGAAGATCTCAGGCTAAGGAGAGGCTGGGAAAACCAGCGCAGAGATTTGCATCAGCGACTTGTCGCC GAGACCAAGAACGGGCACATCCTGAATCAGCACTCCAAGGACCTGGGTGACCAGCTGAGCATGCAGCAGCAACAA GCCGGCCTCAGCTTCTACAACCAGCCTGCTTCCTCCAACATCGAGTTTGAGCCGTCGCCGATAGTCCCACCCAAG CGCCTCGCCCCCAACGGGACTCCGCTCCTCAGCGCCAACATGTCCTCGCCGGACCGAATACCCTCCGCCGAACCT ACCTTTCCCGGCTCCATGGACTTCAATGCAGCCCACGTGCCCGACCTCTTTATGGACGCGGCGGCGGACGGAGCC AACGAGCTCCAGGCAGACATGGAATCCAAGGGAGCTGGAGGGCCGCTGAGTCCATCTGCCCAAGATCTCCTTCCC TCCAATATTTTTGAGGAGAGTGAAGATGCCGAGCACGTGGAATCGAGGAGTCCCTTCGCGCCCGAAACCAAGGCT GCTGGCGAAGAGGGCCCGCAATCTCCGGCGTCATCCAATATGTCTTTCAACCTCATCTCGAGCCCCCACGGCTCA GCGAACCATCTCCCATTCCCGCAGTTTGTGGAACAGGGCGACGGAATGTCGCTGAATGCACACTCGTCCCCGCCT ACGGTCCCGGCTACTAATCACAGTTTTACCAACTTCCTGTTGGCTCTGCAGCGCAGCCGAGGCGCAAAGGCCGCC GACGCTGGCGGACCTCCCATTGGCAGCCTGAAGTCGGCGCAGAGCCAGTCGTTTCCATCGGCGGCAGACGATGGC GAAGACAGCAGGCGAAAGATGATCCTTCCTGCCTGGATCGACCGTGGTTCCATGGCGCCGGACGGCATCTCTTCC GGGGCCCCAGCCACAACGTCGAGACCCCTCTCGGCACTCCGATTGAATGCACACAAGGGGTCACCAGTCATGGCC GTCGCCGATCGAGATGGCGAACGCTCCAGGCCCGCGTCAATAGCCTCTGCGGATCGTCCACGCCCCTCGACCGAC AGCTCATGGATCTGGGGGGCACCGGGAGACCCCGTAGCCCTGCAGCAGAAGAACAGACTCTGGTCCCTGGGGGGC GAGGGGCGGTGGCAGTCCAGGAGCAACTCCAGACGACCTTCGCTGCAGGGCTCCAACGTGCTAACGACAACCCTT GCGTCGGCGGATGACGAGATCTTGGGTGAAGACGAGTTGAGCAACCCGCAGACGATGCCGAGTCAAGTGGGAGTC ATAGGCTCTCGCCCGCCCGGCCCGTCCAAGCTGCACGGCCAGCGCCTCAACCCCGCAGCCCCAACCTTCATGGCA AATTTCTTCACACGAAAGGACAGGGATAAGGACCGCGGTAAGGACAGGGCCAAGGAAGACAAGGGCAAGGGCAAG GAGGTGATGATTCCGGCAGCGGAAGCGACGCCGTCTGGCGACGATTCGCCGTCGGGATCGCGGGCGTCGCGCGAC ACGCACTCGGTCTATACTCGAACCTCGGTATCCGAGTCGCGCGAATCTCTGCAGTTCGACCCGGCGGGCATGGGC ACGGCCGCGGAACTGAACTCGCCCTCCGCATCCAGCCTGAAGGACCCGGAGAAGGTCGTCAGGAAGCTGTTCCGG AAGGGAAGCTCCAGCAAGTTCAGCCTGTCTTCGAGGCTGGGCAAGGAGACGGGCCTGTTTAAGAAAGGACCGGGT AGCGCCGGCAACTCGGACAGGAACGCCTCGGCGGAGCATCGGTCGAGCACCGGCGACCTCGACGACGCCGGCGAC GACATCGCGGTGCTGGGGCGGAGCTTCGACAGCGTCGCGAGCAGCCCATCCCTCGGCCCATCCAAGTCTAGGGAG AGCAGGGAGGGTGGGCGGATTAGCTCCTGGCGCTTCTCCATGTCTTCGATTAAGAAGAAGGGCAGGGATACACCG GTGAAGGAGAAGGGCGGGTTCGATGTGGATCAGGCGCCCGACGAGGAGTAA |
| Transcript | >Hirsu2|221 ATGGAAACCCGGACCGATTCGGCCACGCTCAGCTGGACTAAGCCCGTCTCGAATCGACCCGTTCAGAAATATCTG ATACAAGTCAACGGCGTCCATGTGGGGGATTCGCCGGGCAATGAGACCGCCATTACTGTCACCGGTCTGCGCCCC AATCACTTCTACAACCTGCGAGTCGTCGCCGTCGGCCCCAATAACTTCCGCGCCGGGAGTCCCGTCATCCGCCTT CGAACCTTCGGCAAGGACGGCAGGCCTCAGCTGGGGGACTCACGCCTGCCCACCAGCTTTGTCGACCCCGACAAT GCGCACGATGGCAGTGACGACGAAAACGACAGGCCCGACAAGCCCATATCCTCGCTGCCCACCGTGGAGCCTCTA CCCGTTCTGGACCACAATGCGACTCTATCGCGAGACTCGTGCATCGCCGCCCCGGGGCAACGTCGAAATACCCTC AACCGCCGACATTCGCCGTCGGTTGCCAGTTCCGATCAGCCCCAGGCTAGACTCTCAGCCTCCACCGATCCCGAG ATGTCCTTGGCGGAGCTTAACGAAAAGTTTGAAGGGATCCGCAAAGAAATCGACGACACCTTGGCTCTCTGTGCC AAGGAAGCGGCCGAGTCGCAACAACAAGAGGAGGAGCTCAAGGCGGAAAGGGACCGCAAGCGGCAAGCCCTCAAG GAGAAGGAAGAGCAGACCGCGCAGCTCAAGACGATGATTAGAGTCACGACGGAGCAGGCGCGCGCCGCGGAAAAG GAGCGGCACAAGAAGGAGCAGCAACTTAAGGAGAAGGAGAGCAAGAAGGCCAAGGTCCGCGACAATATCACTAAG TTTGACAAAGAAGTGGACAACATGAAGACGGATCGCCGGGGCTTTGAAGTGCGCAAGGCGGAACTGACCCGACAA CGGGACCGCGACGTTCGCAAGTTCGATAACGAAAACGCGGAGCTTCACGAAAATTGCGTCAAGCTCGAGGCTGAG CTCAAGGACAAGGGGAAGCAGCTGCAGGATCTGAAGGCTGCCAGGGAGCGACTGCCCGGCGCTGACGACGGCAGG TGGAGGGAGGAAGATCTCAGGCTAAGGAGAGGCTGGGAAAACCAGCGCAGAGATTTGCATCAGCGACTTGTCGCC GAGACCAAGAACGGGCACATCCTGAATCAGCACTCCAAGGACCTGGGTGACCAGCTGAGCATGCAGCAGCAACAA GCCGGCCTCAGCTTCTACAACCAGCCTGCTTCCTCCAACATCGAGTTTGAGCCGTCGCCGATAGTCCCACCCAAG CGCCTCGCCCCCAACGGGACTCCGCTCCTCAGCGCCAACATGTCCTCGCCGGACCGAATACCCTCCGCCGAACCT ACCTTTCCCGGCTCCATGGACTTCAATGCAGCCCACGTGCCCGACCTCTTTATGGACGCGGCGGCGGACGGAGCC AACGAGCTCCAGGCAGACATGGAATCCAAGGGAGCTGGAGGGCCGCTGAGTCCATCTGCCCAAGATCTCCTTCCC TCCAATATTTTTGAGGAGAGTGAAGATGCCGAGCACGTGGAATCGAGGAGTCCCTTCGCGCCCGAAACCAAGGCT GCTGGCGAAGAGGGCCCGCAATCTCCGGCGTCATCCAATATGTCTTTCAACCTCATCTCGAGCCCCCACGGCTCA GCGAACCATCTCCCATTCCCGCAGTTTGTGGAACAGGGCGACGGAATGTCGCTGAATGCACACTCGTCCCCGCCT ACGGTCCCGGCTACTAATCACAGTTTTACCAACTTCCTGTTGGCTCTGCAGCGCAGCCGAGGCGCAAAGGCCGCC GACGCTGGCGGACCTCCCATTGGCAGCCTGAAGTCGGCGCAGAGCCAGTCGTTTCCATCGGCGGCAGACGATGGC GAAGACAGCAGGCGAAAGATGATCCTTCCTGCCTGGATCGACCGTGGTTCCATGGCGCCGGACGGCATCTCTTCC GGGGCCCCAGCCACAACGTCGAGACCCCTCTCGGCACTCCGATTGAATGCACACAAGGGGTCACCAGTCATGGCC GTCGCCGATCGAGATGGCGAACGCTCCAGGCCCGCGTCAATAGCCTCTGCGGATCGTCCACGCCCCTCGACCGAC AGCTCATGGATCTGGGGGGCACCGGGAGACCCCGTAGCCCTGCAGCAGAAGAACAGACTCTGGTCCCTGGGGGGC GAGGGGCGGTGGCAGTCCAGGAGCAACTCCAGACGACCTTCGCTGCAGGGCTCCAACGTGCTAACGACAACCCTT GCGTCGGCGGATGACGAGATCTTGGGTGAAGACGAGTTGAGCAACCCGCAGACGATGCCGAGTCAAGTGGGAGTC ATAGGCTCTCGCCCGCCCGGCCCGTCCAAGCTGCACGGCCAGCGCCTCAACCCCGCAGCCCCAACCTTCATGGCA AATTTCTTCACACGAAAGGACAGGGATAAGGACCGCGGTAAGGACAGGGCCAAGGAAGACAAGGGCAAGGGCAAG GAGGTGATGATTCCGGCAGCGGAAGCGACGCCGTCTGGCGACGATTCGCCGTCGGGATCGCGGGCGTCGCGCGAC ACGCACTCGGTCTATACTCGAACCTCGGTATCCGAGTCGCGCGAATCTCTGCAGTTCGACCCGGCGGGCATGGGC ACGGCCGCGGAACTGAACTCGCCCTCCGCATCCAGCCTGAAGGACCCGGAGAAGGTCGTCAGGAAGCTGTTCCGG AAGGGAAGCTCCAGCAAGTTCAGCCTGTCTTCGAGGCTGGGCAAGGAGACGGGCCTGTTTAAGAAAGGACCGGGT AGCGCCGGCAACTCGGACAGGAACGCCTCGGCGGAGCATCGGTCGAGCACCGGCGACCTCGACGACGCCGGCGAC GACATCGCGGTGCTGGGGCGGAGCTTCGACAGCGTCGCGAGCAGCCCATCCCTCGGCCCATCCAAGTCTAGGGAG AGCAGGGAGGGTGGGCGGATTAGCTCCTGGCGCTTCTCCATGTCTTCGATTAAGAAGAAGGGCAGGGATACACCG GTGAAGGAGAAGGGCGGGTTCGATGTGGATCAGGCGCCCGACGAGGAGTAA |
| Gene | >Hirsu2|221 ATGGAAACCCGTACCCGAGCTCGTCAGCATCCTTGGTGTTGACATCCCCCAGGCCCCGGACGTATGCCTCGCTGG AATAGGGACCGATTCGGCCACGCTCAGCTGGACTAAGCCCGTCTCGAATCGACCCGTTCAGAAATATCTGATACA AGTCAACGGCGTCCATGGTCAGTACGCCCCGGCGCCAGTTCCTGCCACAAATCCGGTTTCTTACTGAGAGCTGTT ACGTAGTGGGGGATTCGCCGGGCAATGAGACCGCCATTACTGTCACCGGTCTGCGCCCCAATCACTTCTACAACC TGCGAGTCGTCGCCGTCGGCCCCAATAACTTCCGCGCCGGGAGTCCCGTCATCCGCCTTCGAACCTTCGGCAAGG ACGGCAGGCCTCAGCTGGGGGACTCACGCCTGCCCACCAGCTTTGTCGACCCCGACAATGCGCACGATGGCAGTG ACGACGAAAACGACAGGCCCGACAAGCCCATATCCTCGCTGCCCACCGTGGAGCCTCTACCCGTTCTGGACCACA ATGCGACTCTATCGCGAGACTCGTGCATCGCCGCCCCGGGGCAACGTCGAAATACCCTCAACCGCCGACATTCGC CGTCGGTTGCCAGTTCCGATCAGCCCCAGGCTAGACTCTCAGCCTCCACCGATCCCGAGATGTCCTTGGCGGAGC TTAACGAAAAGTTTGAAGGGATCCGCAAAGAAATCGACGACACCTTGGCTCTCTGTGCCAAGGAAGCGGCCGAGT CGCAACAACAAGAGGAGGAGCTCAAGGCGGAAAGGGACCGCAAGCGGCAAGCCCTCAAGGAGAAGGAAGAGCAGA CCGCGCAGCTCAAGACGATGATTAGAGTCACGACGGAGCAGGCGCGCGCCGCGGAAAAGGAGCGGCACAAGAAGG AGCAGCAACTTAAGGAGAAGGAGAGCAAGAAGGCCAAGGTCCGCGACAATATCACTAAGTTTGACAAAGAAGTGG ACAACATGAAGACGGATCGCCGGGGCTTTGAAGTGCGCAAGGCGGAACTGACCCGACAACGGGACCGCGACGTTC GCAAGTTCGATAACGAAAACGCGGAGCTTCACGAAAATTGCGTCAAGCTCGAGGCTGAGCTCAAGGACAAGGGGA AGCAGCTGCAGGATCTGAAGGCTGCCAGGGAGCGACTGCCCGGCGCTGACGACGGCAGGTGGAGGGAGGAAGATC TCAGGCTAAGGAGAGGCTGGGAAAACCAGCGCAGAGATTTGCATCAGCGACTTGTCGCCGAGACCAAGAACGGGC ACATCCTGAATCAGCACTCCAAGGACCTGGGTGACCAGCTGAGCATGCAGCAGCAACAAGCCGGCCTCAGCTTCT ACAACCAGCCTGCTTCCTCCAACATCGAGTTTGAGCCGTCGCCGATAGTCCCACCCAAGCGCCTCGCCCCCAACG GGACTCCGCTCCTCAGCGCCAACATGTCCTCGCCGGACCGAATACCCTCCGCCGAACCTACCTTTCCCGGCTCCA TGGACTTCAATGCAGCCCACGTGCCCGACCTCTTTATGGACGCGGCGGCGGACGGAGCCAACGAGCTCCAGGCAG ACATGGAATCCAAGGGAGCTGGAGGGCCGCTGAGTCCATCTGCCCAAGATCTCCTTCCCTCCAATATTTTTGAGG AGAGTGAAGATGCCGAGCACGTGGAATCGAGGAGTCCCTTCGCGCCCGAAACCAAGGCTGCTGGCGAAGAGGGCC CGCAATCTCCGGCGTCATCCAATATGTCTTTCAACCTCATCTCGAGCCCCCACGGCTCAGCGAACCATCTCCCAT TCCCGCAGTTTGTGGAACAGGGCGACGGAATGTCGCTGAATGCACACTCGTCCCCGCCTACGGTCCCGGCTACTA ATCACAGTTTTACCAACTTCCTGTTGGCTCTGCAGCGCAGCCGAGGCGCAAAGGCCGCCGACGCTGGCGGACCTC CCATTGGCAGCCTGAAGTCGGCGCAGAGCCAGTCGTTTCCATCGGCGGCAGACGATGGCGAAGACAGCAGGCGAA AGATGATCCTTCCTGCCTGGATCGACCGTGGTTCCATGGCGCCGGACGGCATCTCTTCCGGGGCCCCAGCCACAA CGTCGAGACCCCTCTCGGCACTCCGATTGAATGCACACAAGGGGTCACCAGTCATGGCCGTCGCCGATCGAGATG GCGAACGCTCCAGGCCCGCGTCAATAGCCTCTGCGGATCGTCCACGCCCCTCGACCGACAGCTCATGGATCTGGG GGGCACCGGGAGACCCCGTAGCCCTGCAGCAGAAGAACAGACTCTGGTCCCTGGGGGGCGAGGGGCGGTGGCAGT CCAGGAGCAACTCCAGACGACCTTCGCTGCAGGGCTCCAACGTGCTAACGACAACCCTTGCGTCGGCGGATGACG AGATCTTGGGTGAAGACGAGTTGAGCAACCCGCAGACGATGCCGAGTCAAGTGGGAGTCATAGGCTCTCGCCCGC CCGGCCCGTCCAAGCTGCACGGCCAGCGCCTCAACCCCGCAGCCCCAACCTTCATGGCAAATTTCTTCACACGAA AGGACAGGGATAAGGACCGCGGTAAGGACAGGGCCAAGGAAGACAAGGGCAAGGGCAAGGAGGTGATGATTCCGG CAGCGGAAGCGACGCCGTCTGGCGACGATTCGCCGTCGGGATCGCGGGCGTCGCGCGACACGCACTCGGTCTATA CTCGAACCTCGGTATCCGAGTCGCGCGAATCTCTGCAGTTCGACCCGGCGGGCATGGGCACGGCCGCGGAACTGA ACTCGCCCTCCGCATCCAGCCTGAAGGACCCGGAGAAGGTCGTCAGGAAGCTGTTCCGGAAGGGAAGCTCCAGCA AGTTCAGCCTGTCTTCGAGGCTGGGCAAGGAGACGGGCCTGTTTAAGAAAGGACCGGGTAGCGCCGGCAACTCGG ACAGGAACGCCTCGGCGGAGCATCGGTCGAGCACCGGCGACCTCGACGACGCCGGCGACGACATCGCGGTGCTGG GGCGGAGCTTCGACAGCGTCGCGAGCAGCCCATCCCTCGGCCCATCCAAGTCTAGGGAGAGCAGGGAGGGTGGGC GGATTAGCTCCTGGCGCTTCTCCATGTCTTCGATTAAGAAGAAGGGCAGGGATACACCGGTGAAGGAGAAGGGCG GGTTCGATGTGGATCAGGCGCCCGACGAGGAGTAA |