Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2208
Gene name
LocationContig_1512:768..1187
Strand-
Gene length (bp)419
Transcript length (bp)300
Coding sequence length (bp)300
Protein length (aa) 100

Overview

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1 1 99 2.0E-47
sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1 21 99 5.0E-24
sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1 33 99 3.0E-23
sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1 SV=2 26 99 1.0E-22
sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus PE=1 SV=1 34 99 5.0E-22
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1 1 99 2.0E-47
sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1 21 99 5.0E-24
sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1 33 99 3.0E-23
sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1 SV=2 26 99 1.0E-22
sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus PE=1 SV=1 34 99 5.0E-22
sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1 39 99 1.0E-21
sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1 4 98 2.0E-21
sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2 4 98 2.0E-21
sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1 4 98 2.0E-21
sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1 4 98 5.0E-21
sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=2 4 98 5.0E-21
sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1 34 99 2.0E-20
sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=3 SV=1 37 99 1.0E-18
sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1 38 97 8.0E-15
sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1 38 98 4.0E-09
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6424 0.629 0.0574 0.1263 0.1329 0.004 0.098 0.2079 0.1311 0.0227

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9004
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2208 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2208
MGDIAVENPANHVPPHKKAAPSTIPTIDHFEGLSTDGGDDYATLKKLQRQLEYIQLQEEYIKDEQRSLKRELVRA
QEEIKRIQSVPLVIGQFMEAIDQK*
Coding >Hirsu2|2208
ATGGGCGACATTGCCGTCGAGAACCCGGCCAACCACGTCCCGCCGCACAAGAAGGCCGCGCCCTCGACGATACCG
ACCATCGACCACTTCGAGGGCCTCTCGACCGACGGCGGAGACGACTATGCCACCCTGAAGAAGCTCCAGCGGCAG
TTGGAGTACATCCAGCTGCAGGAAGAGTACATCAAGGATGAGCAGAGGAGTCTGAAGCGGGAGCTTGTGCGAGCT
CAGGAAGAGATCAAGCGGATCCAGAGCGTCCCTCTGGTCATCGGGCAGTTCATGGAGGCCATTGACCAAAAGTAA
Transcript >Hirsu2|2208
ATGGGCGACATTGCCGTCGAGAACCCGGCCAACCACGTCCCGCCGCACAAGAAGGCCGCGCCCTCGACGATACCG
ACCATCGACCACTTCGAGGGCCTCTCGACCGACGGCGGAGACGACTATGCCACCCTGAAGAAGCTCCAGCGGCAG
TTGGAGTACATCCAGCTGCAGGAAGAGTACATCAAGGATGAGCAGAGGAGTCTGAAGCGGGAGCTTGTGCGAGCT
CAGGAAGAGATCAAGCGGATCCAGAGCGTCCCTCTGGTCATCGGGCAGTTCATGGAGGCCATTGACCAAAAGTAA
Gene >Hirsu2|2208
ATGGGCGACATTGCCGTCGAGAACCCGGCCAACCACGTCCCGCCGCACAAGAAGGCCGCGCCCTCGACGATACCG
ACCATCGACCACTTCGAGGGCCTCTCGACCGACGGCGGAGACGACTATGCCACCCTGAAGAAGCTCCAGCGGCAG
TTGGAGTGAGTGCCGGCCCCGGAAAGCCGGTGTGAAGAGTGCTGACGGCAAGAAACGACAGGTACATCCAGCTGC
AGGAAGAGTACATCAAGGATGAGCAGAGGTCCGTCGTCTCCCGCGCCGGCAAGACGGGTTTGGTTTGCTGACACG
ACCTGTCCCCTCCCAGGAGTCTGAAGCGGGAGCTTGTGCGAGCTCAGGAAGAGATCAAGCGGATCCAGAGCGTCC
CTCTGGTCATCGGGCAGTTCATGGAGGCCATTGACCAAAAGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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