© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2203 |
| Gene name | |
| Location | Contig_1510:1296..2107 |
| Strand | - |
| Gene length (bp) | 811 |
| Transcript length (bp) | 477 |
| Coding sequence length (bp) | 477 |
| Protein length (aa) | 159 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03248 | Rer1 | Rer1 family | 2.3E-62 | 27 | 154 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A5PJ65|RER1_BOVIN | Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 | 28 | 154 | 2.0E-55 |
| sp|Q498C8|RER1_RAT | Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 | 28 | 154 | 3.0E-55 |
| sp|Q9CQU3|RER1_MOUSE | Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 | 28 | 154 | 3.0E-55 |
| sp|Q5R5U4|RER1_PONAB | Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 | 28 | 156 | 1.0E-54 |
| sp|O15258|RER1_HUMAN | Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1 | 28 | 156 | 1.0E-54 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A5PJ65|RER1_BOVIN | Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 | 28 | 154 | 2.0E-55 |
| sp|Q498C8|RER1_RAT | Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 | 28 | 154 | 3.0E-55 |
| sp|Q9CQU3|RER1_MOUSE | Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 | 28 | 154 | 3.0E-55 |
| sp|Q5R5U4|RER1_PONAB | Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 | 28 | 156 | 1.0E-54 |
| sp|O15258|RER1_HUMAN | Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1 | 28 | 156 | 1.0E-54 |
| sp|Q5ZHM5|RER1_CHICK | Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1 | 28 | 154 | 1.0E-54 |
| sp|O48670|RER1A_ARATH | Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1 | 29 | 157 | 6.0E-50 |
| sp|Q10358|RER1_SCHPO | Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rer1 PE=3 SV=1 | 28 | 156 | 6.0E-50 |
| sp|P25560|RER1_YEAST | Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2 | 28 | 157 | 8.0E-50 |
| sp|O48671|RER1B_ARATH | Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2 | 29 | 154 | 9.0E-50 |
| sp|Q9ZWI7|RER1C_ARATH | Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1 | 28 | 156 | 3.0E-49 |
| sp|P79003|RER1_SACPS | Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1 | 28 | 157 | 3.0E-48 |
| sp|Q54D10|RER1_DICDI | Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1 | 28 | 157 | 2.0E-46 |
| sp|Q9ZPV7|RER1D_ARATH | Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2 | 28 | 150 | 5.0E-39 |
| sp|P52879|RER1_CAEEL | Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1 | 28 | 150 | 1.0E-38 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.144 | 0.1386 | 0.0218 | 0.2839 | 0.1223 | 0.0196 | 0.7797 | 0.2904 | 0.3478 | 0.0545 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 47 | 19 |
| 2 | 109 | 131 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 750 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2203 MDAPETDQTPFASVTAHTSRLQRVRLRWYIVAYALGIYLLNLFLAFLQPKFDPSNDAIDNEMEDGSVGMLPTKQD EEFKPFIRRLPEFKFWYWATRAIAISFFCTFFELFNVPVFWPVLVMYWIILFVLTMRKQIQHMVKYRYVPFTIGK KNYNKNSP* |
| Coding | >Hirsu2|2203 ATGGATGCGCCGGAAACCGACCAGACGCCCTTCGCCAGCGTCACGGCGCACACGTCTCGGCTGCAGAGGGTACGG CTACGCTGGTACATTGTGGCGTACGCCCTCGGCATCTACCTCCTCAACCTCTTCCTCGCCTTCCTGCAGCCCAAG TTTGACCCGTCCAACGATGCCATTGACAACGAGATGGAGGACGGCTCGGTCGGCATGTTGCCGACGAAGCAGGAC GAGGAGTTCAAGCCCTTCATCCGCCGCCTACCCGAGTTCAAGTTCTGGTACTGGGCCACGAGGGCCATTGCCATT TCCTTCTTCTGCACCTTCTTCGAGCTCTTCAACGTGCCCGTCTTCTGGCCCGTGCTCGTCATGTACTGGATCATC CTCTTCGTCCTGACCATGCGGAAGCAGATCCAGCACATGGTCAAGTATCGCTACGTGCCGTTCACCATCGGCAAG AAGAACTACAACAAGAACAGCCCGTAG |
| Transcript | >Hirsu2|2203 ATGGATGCGCCGGAAACCGACCAGACGCCCTTCGCCAGCGTCACGGCGCACACGTCTCGGCTGCAGAGGGTACGG CTACGCTGGTACATTGTGGCGTACGCCCTCGGCATCTACCTCCTCAACCTCTTCCTCGCCTTCCTGCAGCCCAAG TTTGACCCGTCCAACGATGCCATTGACAACGAGATGGAGGACGGCTCGGTCGGCATGTTGCCGACGAAGCAGGAC GAGGAGTTCAAGCCCTTCATCCGCCGCCTACCCGAGTTCAAGTTCTGGTACTGGGCCACGAGGGCCATTGCCATT TCCTTCTTCTGCACCTTCTTCGAGCTCTTCAACGTGCCCGTCTTCTGGCCCGTGCTCGTCATGTACTGGATCATC CTCTTCGTCCTGACCATGCGGAAGCAGATCCAGCACATGGTCAAGTATCGCTACGTGCCGTTCACCATCGGCAAG AAGAACTACAACAAGAACAGCCCGTAG |
| Gene | >Hirsu2|2203 ATGGATGCGCCGGAAACCGACCAGACGCCCTTCGCCAGCGTCACGGCGCACACGTCTCGGCTGCAGAGGGTACGG CTACGTTTCCCTTTTTTTTTTTTTGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNCCCTCCTCCTCTTCTTCCTCCGCGTCTTTTTCGCCCAAGGCTGGTACATTGGTGCGTCGTC GCCCGGCCCTTGACGCTCCATCAGGAGGCGCTCTCGCTAACGCGCGACAGTGGCGTACGCCCTCGGCATCTACCT CCTCAACCTCTTCCTCGCCTTCCTGCAGCCCAAGTTTGACCCGTCCAACGATGCCATTGACAACGAGATGGAGGA CGGCTCGGTCGGCATGTTGCCGACGAAGCAGGACGAGGAGTTCAAGCCCTTCATCCGCCGCCTACCCGAGTTCAA GTTCTGGTACTGGGCCACGAGGGCCATTGCCATTTCCTTCTTCTGCACCTTCTTCGAGCTCTTCAACGTGCCCGT CTTCTGGCCCGTGCTCGTCATGTACTGGATCATCCTCTTCGTCCTGACCAGTAAGTCCCCCCCCCCCCCCGGGCC CCTCCTGCGACCGAGAGGGCGCTGGAGCTGACGCGATGCCTCGTCTCCAGTGCGGAAGCAGATCCAGCACATGGT CAAGTATCGCTACGTGCCGTTCACCATCGGCAAGAAGAACTACAACAAGAACAGCCCGTAG |