Fungal Genomics

General Properties

Protein ID	Hirsu2|2202
Gene name
Location	Contig_1510:246..525
Strand	-
Gene length (bp)	279
Transcript length (bp)	279
Coding sequence length (bp)	279
Protein length (aa)	93

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03985	Paf1	Paf1	9.2E-25	16	90

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9US06|PAF1_SCHPO	RNA polymerase II-associated protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.03 PE=1 SV=2	15	88	4.0E-13

GO

GO Term	Description	Terminal node
GO:0016593	Cdc73/Paf1 complex	Yes
GO:0016570	histone modification	Yes
GO:0006368	transcription elongation from RNA polymerase II promoter	Yes
GO:0008152	metabolic process	No
GO:0032991	protein-containing complex	No
GO:0034654	nucleobase-containing compound biosynthetic process	No
GO:0009987	cellular process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0008023	transcription elongation factor complex	No
GO:0032774	RNA biosynthetic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0009059	macromolecule biosynthetic process	No
GO:0071704	organic substance metabolic process	No
GO:0044271	cellular nitrogen compound biosynthetic process	No
GO:0019538	protein metabolic process	No
GO:0044249	cellular biosynthetic process	No
GO:0009058	biosynthetic process	No
GO:0008150	biological_process	No
GO:0046483	heterocycle metabolic process	No
GO:0018130	heterocycle biosynthetic process	No
GO:0043170	macromolecule metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0036211	protein modification process	No
GO:0005575	cellular_component	No
GO:1901576	organic substance biosynthetic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0006354	DNA-templated transcription, elongation	No
GO:0019438	aromatic compound biosynthetic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0044238	primary metabolic process	No
GO:0140513	nuclear protein-containing complex	No
GO:0016070	RNA metabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:1901362	organic cyclic compound biosynthetic process	No
GO:0043412	macromolecule modification	No
GO:0090304	nucleic acid metabolic process	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm|Nucleus		0.6536	0.5519	0.1302	0.0783	0.2653	0.0204	0.0988	0.1109	0.138	0.0913

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	4
Orthogroup	1990
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2|3841
Ophiocordyceps australis map64 (Brazil)	OphauB2|5683
Ophiocordyceps camponoti-floridani	Ophcf2|04961
Ophiocordyceps camponoti-rufipedis	Ophun1|5588
Ophiocordyceps kimflemingae	Ophio5|6107
Ophiocordyceps subramaniannii	Hirsu2|2202 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|2202 MSSSGARSGERMVHQDYIARIRFSNALPPPPNLPKLLDIPNTGLASGQYTTPGFASRLAREQPLNVEADAELGMP LNLVGMPGVFDGDERCK*
Coding	>Hirsu2|2202 ATGTCGTCGTCCGGGGCGCGCTCCGGCGAGCGCATGGTTCACCAGGACTACATCGCGCGCATCCGCTTCTCCAAC GCGCTGCCGCCGCCGCCGAACCTGCCCAAGCTGCTCGACATCCCTAACACGGGTCTCGCCAGCGGGCAGTACACG ACGCCGGGCTTCGCGTCCCGGCTGGCGCGGGAGCAGCCGCTCAATGTCGAGGCCGACGCCGAGCTGGGCATGCCG CTGAACCTGGTGGGCATGCCGGGCGTCTTCGACGGCGACGAGCGCTGTAAGTAG
Transcript	>Hirsu2|2202 ATGTCGTCGTCCGGGGCGCGCTCCGGCGAGCGCATGGTTCACCAGGACTACATCGCGCGCATCCGCTTCTCCAAC GCGCTGCCGCCGCCGCCGAACCTGCCCAAGCTGCTCGACATCCCTAACACGGGTCTCGCCAGCGGGCAGTACACG ACGCCGGGCTTCGCGTCCCGGCTGGCGCGGGAGCAGCCGCTCAATGTCGAGGCCGACGCCGAGCTGGGCATGCCG CTGAACCTGGTGGGCATGCCGGGCGTCTTCGACGGCGACGAGCGCTGTAAGTAG
Gene	>Hirsu2|2202 ATGTCGTCGTCCGGGGCGCGCTCCGGCGAGCGCATGGTTCACCAGGACTACATCGCGCGCATCCGCTTCTCCAAC GCGCTGCCGCCGCCGCCGAACCTGCCCAAGCTGCTCGACATCCCTAACACGGGTCTCGCCAGCGGGCAGTACACG ACGCCGGGCTTCGCGTCCCGGCTGGCGCGGGAGCAGCCGCTCAATGTCGAGGCCGACGCCGAGCTGGGCATGCCG CTGAACCTGGTGGGCATGCCGGGCGTCTTCGACGGCGACGAGCGCTGTAAGTAG