© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|220 |
| Gene name | |
| Location | Contig_1039:7965..9487 |
| Strand | + |
| Gene length (bp) | 1522 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05277 | DUF726 | Protein of unknown function (DUF726) | 1.4E-92 | 97 | 401 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5TGY1|TMCO4_HUMAN | Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 | 107 | 399 | 2.0E-43 |
| sp|Q9US10|YK68_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 | 98 | 403 | 7.0E-43 |
| sp|P43564|YFD4_YEAST | Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 | 157 | 399 | 2.0E-41 |
| sp|Q91WU4|TMCO4_MOUSE | Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 | 158 | 399 | 1.0E-40 |
| sp|Q499U8|TMCO4_RAT | Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 | 107 | 437 | 9.0E-40 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5TGY1|TMCO4_HUMAN | Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 | 107 | 399 | 2.0E-43 |
| sp|Q9US10|YK68_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 | 98 | 403 | 7.0E-43 |
| sp|P43564|YFD4_YEAST | Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 | 157 | 399 | 2.0E-41 |
| sp|Q91WU4|TMCO4_MOUSE | Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 | 158 | 399 | 1.0E-40 |
| sp|Q499U8|TMCO4_RAT | Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 | 107 | 437 | 9.0E-40 |
| sp|O14244|YELD_SCHPO | Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1 | 158 | 404 | 5.0E-39 |
| sp|Q20035|TMCO4_CAEEL | Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=3 SV=2 | 152 | 415 | 2.0E-38 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|220 MDHELADKFPPIPNTLWILPVDKRKLLLHIVMLLVISLQEYNANARVLLLHLASSLSLSLDIYHEDELRVSQALA KLALEFADEQELGQKPEEKHRLLGPMAEHGHLLANLFGISPVRPTSKMLESWNREVQDFALLRLYDDARTEYRDA RETPAVDRRLHLAIAMSGCLSEEEDVVRPWQCLGHEAETYVARWEVAALMNLGGALETVVKSTAWRSAKKDIMKR SIFTSLIDSIWPVALLKVSKIIDNPWNMGMVRAEKAGVLLADAIIRHKFQGERSVSLVGYSLASRAIYTCLMVLA ERRQFGLVDSVVMMGTPAPSESRVWLTLKSVVTGRLVNVYSEQDFILGFLYRTSNVHFGVAGLQEIQGVSGVENH GVKQLPRGHLEYQSLAGRILEDIGWEGLEVKPAKAGPEAKPARAGPESKPAKAARAPRRAGPRRAARPAK* |
| Coding | >Hirsu2|220 ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGATTGCTGGGACCT ATGGCGGAGCACGGTCATCTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAG AGCTGGAACCGCGAAGTCCAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCC CGAGAGACGCCAGCTGTTGATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGAC GTGGTCAGGCCGTGGCAATGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATG AACTTGGGCGGCGCGCTCGAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGT TCGATTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGCCCTACTCAAGGTCAGCAAGATCATCGACAACCCG TGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCTTCTTGCCGATGCCATCATCCGGCACAAATTCCAG GGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATCCCGGGCCATTTACACGTGCCTCATGGTGCTGGCA GAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGATGGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGG CTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGTGTACTCGGAGCAGGACTTCATCCTGGGCTTCCTC TACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCAGGAGATCCAGGGCGTCAGCGGGGTCGAGAACCAC GGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAGCCTGGCCGGTCGCATCCTCGAAGACATCGGATGG GAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGCCAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCG GCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAGGGCAGCCAGGCCGGCCAAGTAA |
| Transcript | >Hirsu2|220 ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGATTGCTGGGACCT ATGGCGGAGCACGGTCATCTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAG AGCTGGAACCGCGAAGTCCAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCC CGAGAGACGCCAGCTGTTGATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGAC GTGGTCAGGCCGTGGCAATGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATG AACTTGGGCGGCGCGCTCGAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGT TCGATTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGCCCTACTCAAGGTCAGCAAGATCATCGACAACCCG TGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCTTCTTGCCGATGCCATCATCCGGCACAAATTCCAG GGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATCCCGGGCCATTTACACGTGCCTCATGGTGCTGGCA GAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGATGGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGG CTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGTGTACTCGGAGCAGGACTTCATCCTGGGCTTCCTC TACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCAGGAGATCCAGGGCGTCAGCGGGGTCGAGAACCAC GGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAGCCTGGCCGGTCGCATCCTCGAAGACATCGGATGG GAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGCCAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCG GCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAGGGCAGCCAGGCCGGCCAAGTAA |
| Gene | >Hirsu2|220 ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGTGTCCGACGATGG AAGGCCAGTCTTGGGGGCGGTTCTGCTTCCAACACCATCAGCCTTGCCGGCCGGCTCAAGTCGGAAGGGATAGGA GCCGTGCATGGGGGAGTCGGCTTGACACCCGCTGCCTTGGCAGGATTGCTGGGACCTATGGCGGAGCACGGTCAT CTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAGAGCTGGAACCGCGAAGTC CAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCCCGAGAGACGCCAGCTGTT GATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGACGTGGTCAGGCCGTGGCAA TGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATGAACTTGGGCGGCGCGCTC GAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGTTCGAGTAAGTTGGCGATG TGATGCTGCGTTCGGACTGGCCGCTGATGCCTCGGCAGTTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGC CCTACTCAAGGTCAGCAAGATCATCGACAACCCGTGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCT TCTTGCCGATGCCATCATCCGGCACAAATTCCAGGGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATC CCGGGCCATTTACACGTGCCTCATGGTGCTGGCAGAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGAT GGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGGCTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGT GTACTCGGAGCAGGACTTCATCCTGGGCTTCCTCTACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCA GGAGATCCAGGGCGTCAGCGGGGTCGAGAACCACGGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAG CCTGGCCGGTCGCATCCTCGAAGACATCGGATGGGAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGC CAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCGGCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAG GGCAGCCAGGCCGGCCAAGTAA |