Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|220
Gene name
LocationContig_1039:7965..9487
Strand+
Gene length (bp)1522
Transcript length (bp)1338
Coding sequence length (bp)1338
Protein length (aa) 446

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05277 DUF726 Protein of unknown function (DUF726) 1.2E-92 97 401

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 107 399 2.0E-43
sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 98 403 7.0E-43
sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 157 399 2.0E-41
sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 158 399 1.0E-40
sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 107 437 9.0E-40
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 107 399 2.0E-43
sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 98 403 7.0E-43
sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 157 399 2.0E-41
sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 158 399 1.0E-40
sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 107 437 9.0E-40
sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1 158 404 5.0E-39
sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=3 SV=2 152 415 2.0E-38
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|220
MDHELADKFPPIPNTLWILPVDKRKLLLHIVMLLVISLQEYNANARVLLLHLASSLSLSLDIYHEDELRVSQALA
KLALEFADEQELGQKPEEKHRLLGPMAEHGHLLANLFGISPVRPTSKMLESWNREVQDFALLRLYDDARTEYRDA
RETPAVDRRLHLAIAMSGCLSEEEDVVRPWQCLGHEAETYVARWEVAALMNLGGALETVVKSTAWRSAKKDIMKR
SIFTSLIDSIWPVALLKVSKIIDNPWNMGMVRAEKAGVLLADAIIRHKFQGERSVSLVGYSLASRAIYTCLMVLA
ERRQFGLVDSVVMMGTPAPSESRVWLTLKSVVTGRLVNVYSEQDFILGFLYRTSNVHFGVAGLQEIQGVSGVENH
GVKQLPRGHLEYQSLAGRILEDIGWEGLEVKPAKAGPEAKPARAGPESKPAKAARAPRRAGPRRAARPAK*
Coding >Hirsu2|220
ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA
CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT
CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC
AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGATTGCTGGGACCT
ATGGCGGAGCACGGTCATCTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAG
AGCTGGAACCGCGAAGTCCAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCC
CGAGAGACGCCAGCTGTTGATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGAC
GTGGTCAGGCCGTGGCAATGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATG
AACTTGGGCGGCGCGCTCGAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGT
TCGATTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGCCCTACTCAAGGTCAGCAAGATCATCGACAACCCG
TGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCTTCTTGCCGATGCCATCATCCGGCACAAATTCCAG
GGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATCCCGGGCCATTTACACGTGCCTCATGGTGCTGGCA
GAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGATGGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGG
CTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGTGTACTCGGAGCAGGACTTCATCCTGGGCTTCCTC
TACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCAGGAGATCCAGGGCGTCAGCGGGGTCGAGAACCAC
GGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAGCCTGGCCGGTCGCATCCTCGAAGACATCGGATGG
GAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGCCAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCG
GCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAGGGCAGCCAGGCCGGCCAAGTAA
Transcript >Hirsu2|220
ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA
CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT
CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC
AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGATTGCTGGGACCT
ATGGCGGAGCACGGTCATCTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAG
AGCTGGAACCGCGAAGTCCAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCC
CGAGAGACGCCAGCTGTTGATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGAC
GTGGTCAGGCCGTGGCAATGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATG
AACTTGGGCGGCGCGCTCGAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGT
TCGATTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGCCCTACTCAAGGTCAGCAAGATCATCGACAACCCG
TGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCTTCTTGCCGATGCCATCATCCGGCACAAATTCCAG
GGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATCCCGGGCCATTTACACGTGCCTCATGGTGCTGGCA
GAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGATGGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGG
CTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGTGTACTCGGAGCAGGACTTCATCCTGGGCTTCCTC
TACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCAGGAGATCCAGGGCGTCAGCGGGGTCGAGAACCAC
GGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAGCCTGGCCGGTCGCATCCTCGAAGACATCGGATGG
GAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGCCAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCG
GCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAGGGCAGCCAGGCCGGCCAAGTAA
Gene >Hirsu2|220
ATGGACCACGAGCTGGCCGACAAGTTTCCGCCCATCCCTAACACGCTCTGGATTCTCCCCGTGGACAAAAGGAAA
CTCCTGCTGCACATCGTTATGCTGCTAGTTATCTCTCTTCAAGAGTACAACGCAAACGCCCGCGTCTTACTCCTT
CATCTTGCCTCCTCTCTGAGCCTGTCCCTCGACATATACCACGAGGATGAGCTCCGAGTCTCGCAAGCCCTGGCC
AAACTCGCGCTCGAGTTCGCAGACGAACAGGAGCTTGGCCAGAAGCCAGAAGAGAAGCATAGTGTCCGACGATGG
AAGGCCAGTCTTGGGGGCGGTTCTGCTTCCAACACCATCAGCCTTGCCGGCCGGCTCAAGTCGGAAGGGATAGGA
GCCGTGCATGGGGGAGTCGGCTTGACACCCGCTGCCTTGGCAGGATTGCTGGGACCTATGGCGGAGCACGGTCAT
CTGCTGGCTAATCTCTTCGGAATCAGCCCCGTCAGGCCGACCAGCAAGATGCTCGAGAGCTGGAACCGCGAAGTC
CAGGACTTCGCCCTTCTCCGCTTGTACGACGACGCGCGCACCGAGTATCGCGACGCCCGAGAGACGCCAGCTGTT
GATCGCAGGCTGCACCTCGCTATTGCCATGAGCGGCTGTCTCTCCGAGGAGGAGGACGTGGTCAGGCCGTGGCAA
TGCCTCGGACACGAGGCCGAGACGTACGTGGCACGCTGGGAGGTGGCCGCACTCATGAACTTGGGCGGCGCGCTC
GAGACGGTCGTCAAAAGCACGGCCTGGAGAAGCGCCAAGAAGGATATCATGAAGCGTTCGAGTAAGTTGGCGATG
TGATGCTGCGTTCGGACTGGCCGCTGATGCCTCGGCAGTTTTCACGAGCCTCATTGATTCCATCTGGCCCGTCGC
CCTACTCAAGGTCAGCAAGATCATCGACAACCCGTGGAACATGGGCATGGTGCGTGCCGAGAAAGCAGGGGTCCT
TCTTGCCGATGCCATCATCCGGCACAAATTCCAGGGGGAGCGATCGGTCTCCCTCGTCGGCTACAGCCTGGCATC
CCGGGCCATTTACACGTGCCTCATGGTGCTGGCAGAACGCCGCCAGTTTGGCCTGGTCGACTCGGTGGTCATGAT
GGGCACGCCGGCGCCGTCGGAGAGCCGCGTCTGGCTCACCCTCAAGAGCGTTGTGACAGGCCGGCTGGTCAACGT
GTACTCGGAGCAGGACTTCATCCTGGGCTTCCTCTACCGCACCTCCAACGTACACTTTGGCGTCGCCGGCCTGCA
GGAGATCCAGGGCGTCAGCGGGGTCGAGAACCACGGCGTCAAGCAGCTGCCCCGTGGCCACCTGGAGTATCAGAG
CCTGGCCGGTCGCATCCTCGAAGACATCGGATGGGAGGGTCTCGAAGTCAAGCCGGCCAAGGCGGGCCCCGAAGC
CAAGCCGGCCAGAGCGGGCCCCGAATCCAAGCCGGCCAAGGCGGCTCGGGCCCCGAGACGAGCGGGCCCGAGGAG
GGCAGCCAGGCCGGCCAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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