Protein ID | Hirsu2|2191 |
Gene name | |
Location | Contig_1508:3904..5685 |
Strand | - |
Gene length (bp) | 1781 |
Transcript length (bp) | 1656 |
Coding sequence length (bp) | 1656 |
Protein length (aa) | 552 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1784 | 0.1678 | 0.0799 | 0.5161 | 0.0538 | 0.0074 | 0.1674 | 0.4178 | 0.3055 | 0.014 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 86 | 108 | 22 |
2 | 114 | 136 | 22 |
3 | 148 | 170 | 22 |
4 | 195 | 217 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1987 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2191 MSPPVKPFVYISQGPDSRFPATTFDPKSVTRASWKPKLMKPPRCGPLISFNRHPDSHSAPPRQTHPYLPIGPRAR TWIKWVRRGQLVLRAVQLTGALGILTLMVIILGPSEATAWVMRITPGISVIHCLYATYHLARNAAARTPATSAAY QAFAVMLDLSVVSLYTYGAFSAHQQMSSWYTRFSSQDATPHLTLAVYYLLIGTGTLHLVSISVSLWLALTFRKIS LMPPDVNPLEGNLITRSLHKGNESSVTSISTAKNYKVLSTVRLQKSNTSTSSYQGDRTLLCIPFKYTRAGATYPP STPEDPQFHLPAGHCLPHHDTSSQTQLSCISRQRVTSRSSGGKDRLCTELLVVDSSSPSRCAVSTAPRRPKFTET LQPPDSHISRANRLFFIPGTAPDYSALPQHCSSPEVCDSEEEDVYNPKSDKTSLRLHPNPLRLHPTRNALCLSID VSTSVRSLDSCVTKDELNLFPDFDNGQRQYTVGSDTAEGEPLGLRQIQDFVRTKDRPFSRLHGEPCASVSIGNNR KTSSGNDYKSEDTPLVFGRRNYSSSK* |
Coding | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGACTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGG ACTTGGATCAAATGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTG ACTTTGATGGTCATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTCCTGGGATTTCCGTC ATACACTGCCTTTACGCCACATACCACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTAT CAAGCTTTTGCGGTCATGCTGGACCTCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAG ATGAGCTCTTGGTATACGAGATTCAGCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTC ATTGGCACTGGGACCCTGCATCTAGTTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGT CTCATGCCGCCTGATGTGAACCCTTTAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCA GTAACATCAATAAGCACCGCTAAGAATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACT AGTTCATATCAGGGCGATCGTACGCTTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCA TCGACCCCAGAAGATCCACAGTTCCATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACC CAGCTCTCTTGTATTAGTCGGCAAAGGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTG CTGGTTGTGGACTCCAGCTCGCCGTCTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACG TTGCAACCCCCAGATTCACACATCTCGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCC GCCTTGCCACAGCACTGCAGTTCTCCCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGAT AAGACCTCGTTGAGGTTGCACCCTAATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGAT GTCAGCACGTCGGTACGTTCACTGGATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAAC GGCCAACGGCAGTACACCGTCGGAAGCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTC GTTCGAACAAAAGATCGTCCCTTTTCAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGA AAGACTTCGTCGGGTAACGACTACAAATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGC AAATGA |
Transcript | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGACTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGG ACTTGGATCAAATGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTG ACTTTGATGGTCATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTCCTGGGATTTCCGTC ATACACTGCCTTTACGCCACATACCACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTAT CAAGCTTTTGCGGTCATGCTGGACCTCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAG ATGAGCTCTTGGTATACGAGATTCAGCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTC ATTGGCACTGGGACCCTGCATCTAGTTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGT CTCATGCCGCCTGATGTGAACCCTTTAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCA GTAACATCAATAAGCACCGCTAAGAATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACT AGTTCATATCAGGGCGATCGTACGCTTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCA TCGACCCCAGAAGATCCACAGTTCCATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACC CAGCTCTCTTGTATTAGTCGGCAAAGGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTG CTGGTTGTGGACTCCAGCTCGCCGTCTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACG TTGCAACCCCCAGATTCACACATCTCGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCC GCCTTGCCACAGCACTGCAGTTCTCCCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGAT AAGACCTCGTTGAGGTTGCACCCTAATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGAT GTCAGCACGTCGGTACGTTCACTGGATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAAC GGCCAACGGCAGTACACCGTCGGAAGCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTC GTTCGAACAAAAGATCGTCCCTTTTCAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGA AAGACTTCGTCGGGTAACGACTACAAATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGC AAATGA |
Gene | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGAGTAGGTAGAAAGCTCAACCTGACCGAACAGCCTGCGACTCAAGCCAAACTGACAGCACTCC AGCTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGGACTTGGATCAAA TGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTGACTTTGATGGTC ATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTGTGTGTTTTTGCTCCTTCCATGGGTTT TTTAGATCTACCGCTAACTTGGTTGCTGTAACTAGCCTGGGATTTCCGTCATACACTGCCTTTACGCCACATACC ACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTATCAAGCTTTTGCGGTCATGCTGGACC TCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAGATGAGCTCTTGGTATACGAGATTCA GCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTCATTGGCACTGGGACCCTGCATCTAG TTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGTCTCATGCCGCCTGATGTGAACCCTT TAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCAGTAACATCAATAAGCACCGCTAAGA ATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACTAGTTCATATCAGGGCGATCGTACGC TTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCATCGACCCCAGAAGATCCACAGTTCC ATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACCCAGCTCTCTTGTATTAGTCGGCAAA GGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTGCTGGTTGTGGACTCCAGCTCGCCGT CTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACGTTGCAACCCCCAGATTCACACATCT CGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCCGCCTTGCCACAGCACTGCAGTTCTC CCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGATAAGACCTCGTTGAGGTTGCACCCTA ATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGATGTCAGCACGTCGGTACGTTCACTGG ATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAACGGCCAACGGCAGTACACCGTCGGAA GCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTCGTTCGAACAAAAGATCGTCCCTTTT CAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGAAAGACTTCGTCGGGTAACGACTACA AATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGCAAATGA |