© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2191 |
| Gene name | |
| Location | Contig_1508:3904..5685 |
| Strand | - |
| Gene length (bp) | 1781 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1656 |
| Protein length (aa) | 552 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.1784 | 0.1678 | 0.0799 | 0.5161 | 0.0538 | 0.0074 | 0.1674 | 0.4178 | 0.3055 | 0.014 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 108 | 22 |
| 2 | 114 | 136 | 22 |
| 3 | 148 | 170 | 22 |
| 4 | 195 | 217 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1987 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2191 MSPPVKPFVYISQGPDSRFPATTFDPKSVTRASWKPKLMKPPRCGPLISFNRHPDSHSAPPRQTHPYLPIGPRAR TWIKWVRRGQLVLRAVQLTGALGILTLMVIILGPSEATAWVMRITPGISVIHCLYATYHLARNAAARTPATSAAY QAFAVMLDLSVVSLYTYGAFSAHQQMSSWYTRFSSQDATPHLTLAVYYLLIGTGTLHLVSISVSLWLALTFRKIS LMPPDVNPLEGNLITRSLHKGNESSVTSISTAKNYKVLSTVRLQKSNTSTSSYQGDRTLLCIPFKYTRAGATYPP STPEDPQFHLPAGHCLPHHDTSSQTQLSCISRQRVTSRSSGGKDRLCTELLVVDSSSPSRCAVSTAPRRPKFTET LQPPDSHISRANRLFFIPGTAPDYSALPQHCSSPEVCDSEEEDVYNPKSDKTSLRLHPNPLRLHPTRNALCLSID VSTSVRSLDSCVTKDELNLFPDFDNGQRQYTVGSDTAEGEPLGLRQIQDFVRTKDRPFSRLHGEPCASVSIGNNR KTSSGNDYKSEDTPLVFGRRNYSSSK* |
| Coding | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGACTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGG ACTTGGATCAAATGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTG ACTTTGATGGTCATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTCCTGGGATTTCCGTC ATACACTGCCTTTACGCCACATACCACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTAT CAAGCTTTTGCGGTCATGCTGGACCTCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAG ATGAGCTCTTGGTATACGAGATTCAGCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTC ATTGGCACTGGGACCCTGCATCTAGTTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGT CTCATGCCGCCTGATGTGAACCCTTTAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCA GTAACATCAATAAGCACCGCTAAGAATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACT AGTTCATATCAGGGCGATCGTACGCTTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCA TCGACCCCAGAAGATCCACAGTTCCATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACC CAGCTCTCTTGTATTAGTCGGCAAAGGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTG CTGGTTGTGGACTCCAGCTCGCCGTCTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACG TTGCAACCCCCAGATTCACACATCTCGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCC GCCTTGCCACAGCACTGCAGTTCTCCCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGAT AAGACCTCGTTGAGGTTGCACCCTAATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGAT GTCAGCACGTCGGTACGTTCACTGGATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAAC GGCCAACGGCAGTACACCGTCGGAAGCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTC GTTCGAACAAAAGATCGTCCCTTTTCAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGA AAGACTTCGTCGGGTAACGACTACAAATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGC AAATGA |
| Transcript | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGACTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGG ACTTGGATCAAATGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTG ACTTTGATGGTCATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTCCTGGGATTTCCGTC ATACACTGCCTTTACGCCACATACCACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTAT CAAGCTTTTGCGGTCATGCTGGACCTCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAG ATGAGCTCTTGGTATACGAGATTCAGCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTC ATTGGCACTGGGACCCTGCATCTAGTTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGT CTCATGCCGCCTGATGTGAACCCTTTAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCA GTAACATCAATAAGCACCGCTAAGAATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACT AGTTCATATCAGGGCGATCGTACGCTTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCA TCGACCCCAGAAGATCCACAGTTCCATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACC CAGCTCTCTTGTATTAGTCGGCAAAGGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTG CTGGTTGTGGACTCCAGCTCGCCGTCTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACG TTGCAACCCCCAGATTCACACATCTCGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCC GCCTTGCCACAGCACTGCAGTTCTCCCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGAT AAGACCTCGTTGAGGTTGCACCCTAATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGAT GTCAGCACGTCGGTACGTTCACTGGATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAAC GGCCAACGGCAGTACACCGTCGGAAGCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTC GTTCGAACAAAAGATCGTCCCTTTTCAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGA AAGACTTCGTCGGGTAACGACTACAAATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGC AAATGA |
| Gene | >Hirsu2|2191 ATGAGCCCTCCTGTCAAGCCTTTCGTGTATATTTCCCAGGGGCCCGATTCGCGATTCCCCGCCACGACGTTTGAC CCCAAATCCGTCACGAGGGCTAGCTGGAAGCCTAAGCTCATGAAACCCCCGCGTTGTGGGCCCTTGATTTCGTTC AATCGACACCCAGAGTAGGTAGAAAGCTCAACCTGACCGAACAGCCTGCGACTCAAGCCAAACTGACAGCACTCC AGCTCTCATTCTGCGCCTCCACGACAGACACATCCGTACCTGCCTATTGGACCCCGTGCCAGGACTTGGATCAAA TGGGTGCGGCGCGGGCAGCTGGTTCTGCGAGCTGTGCAGTTGACTGGTGCCTTGGGCATCCTGACTTTGATGGTC ATAATCCTAGGGCCGAGTGAAGCTACGGCTTGGGTTATGAGAATCACTGTGTGTTTTTGCTCCTTCCATGGGTTT TTTAGATCTACCGCTAACTTGGTTGCTGTAACTAGCCTGGGATTTCCGTCATACACTGCCTTTACGCCACATACC ACCTTGCACGAAACGCTGCCGCTCGTACGCCCGCCACTTCTGCGGCCTATCAAGCTTTTGCGGTCATGCTGGACC TCTCTGTTGTGAGCCTGTACACGTACGGAGCCTTTTCTGCGCATCAGCAGATGAGCTCTTGGTATACGAGATTCA GCAGCCAGGACGCCACGCCTCATCTCACATTGGCTGTCTATTACCTCCTCATTGGCACTGGGACCCTGCATCTAG TTTCAATCTCAGTTTCACTGTGGCTGGCTCTGACGTTTCGAAAAATTAGTCTCATGCCGCCTGATGTGAACCCTT TAGAGGGCAACTTGATCACACGGTCCCTTCACAAAGGAAACGAATCCTCAGTAACATCAATAAGCACCGCTAAGA ATTACAAGGTGCTTTCGACAGTTCGTCTACAGAAGAGCAACACCTCAACTAGTTCATATCAGGGCGATCGTACGC TTCTCTGCATCCCCTTCAAGTACACAAGGGCAGGGGCAACCTATCCGCCATCGACCCCAGAAGATCCACAGTTCC ATCTCCCAGCTGGACACTGTCTACCCCATCACGACACCTCGTCCCAAACCCAGCTCTCTTGTATTAGTCGGCAAA GGGTAACGTCAAGGTCCAGCGGGGGCAAGGACAGATTATGCACGGAACTGCTGGTTGTGGACTCCAGCTCGCCGT CTCGTTGCGCCGTTTCCACTGCTCCCCGCAGACCCAAGTTCACCGAGACGTTGCAACCCCCAGATTCACACATCT CGAGGGCTAATCGCCTATTCTTCATCCCCGGAACTGCGCCGGATTATTCCGCCTTGCCACAGCACTGCAGTTCTC CCGAGGTGTGTGACTCAGAGGAGGAGGATGTATACAACCCTAAAAGTGATAAGACCTCGTTGAGGTTGCACCCTA ATCCCCTCCGCTTGCACCCAACACGGAATGCACTGTGTTTGTCAATTGATGTCAGCACGTCGGTACGTTCACTGG ATAGCTGCGTTACTAAAGACGAGCTCAATCTCTTTCCCGATTTTGACAACGGCCAACGGCAGTACACCGTCGGAA GCGATACTGCGGAGGGTGAGCCACTGGGGCTCAGGCAAATACAAGACTTCGTTCGAACAAAAGATCGTCCCTTTT CAAGGTTACATGGCGAACCTTGCGCATCGGTATCAATTGGCAACAATAGAAAGACTTCGTCGGGTAACGACTACA AATCTGAAGACACTCCTCTGGTCTTCGGTCGACGGAATTACAGCAGTAGCAAATGA |