Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2180
Gene name
LocationContig_1504:1959..3108
Strand+
Gene length (bp)1149
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04059 RRM_2 RNA recognition motif 2 2.5E-24 30 92
PF04059 RRM_2 RNA recognition motif 2 2.3E-08 105 142

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P08965|MEI2_SCHPO Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mei2 PE=1 SV=1 12 203 2.0E-54
sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1 2 176 1.0E-35
sp|Q8W4I9|AML1_ARATH Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1 18 180 1.0E-34
sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=2 SV=1 18 180 2.0E-34
sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2 SV=2 18 180 3.0E-34
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Swissprot ID Swissprot Description Start End E-value
sp|P08965|MEI2_SCHPO Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mei2 PE=1 SV=1 12 203 2.0E-54
sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1 2 176 1.0E-35
sp|Q8W4I9|AML1_ARATH Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1 18 180 1.0E-34
sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=2 SV=1 18 180 2.0E-34
sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2 SV=2 18 180 3.0E-34
sp|Q64M78|OML4_ORYSJ Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1 18 176 3.0E-34
sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1 17 164 2.0E-31
sp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2 SV=1 18 158 1.0E-30
sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2 18 166 6.0E-29
sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2 9 163 1.0E-24
sp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1 28 158 3.0E-19
sp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica GN=PLA2 PE=2 SV=1 28 158 3.0E-19
sp|O65001|TE1_MAIZE Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1 27 158 5.0E-19
sp|Q6ET49|OML7_ORYSJ Protein MEI2-like 7 OS=Oryza sativa subsp. japonica GN=OML7 PE=2 SV=1 31 145 3.0E-10
sp|Q652K6|OML6_ORYSJ Protein MEI2-like 6 OS=Oryza sativa subsp. japonica GN=ML6 PE=2 SV=1 31 158 2.0E-08
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal|Nuclear export signal 0.6663 0.7209 0.0325 0.0977 0.1354 0.0005 0.1177 0.1136 0.0438 0.012

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4981
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7951
Ophiocordyceps australis map64 (Brazil) OphauB2|4669
Ophiocordyceps camponoti-floridani Ophcf2|04256
Ophiocordyceps camponoti-rufipedis Ophun1|4716
Ophiocordyceps kimflemingae Ophio5|8617
Ophiocordyceps subramaniannii Hirsu2|2180 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2180
MRITRSSYHNMASHHNHVDINRIRDGIDVRTTIMLRNIPNKVDQAMLKRIIDESSWGKYDFMYLRIDFANDCNVG
YAFINFVDPLDIIDVSRGRISLLLLAYDTQFVDARGNQRWNCFKSDKVAEISYATIQGKDCLVQKFRNSSVMLEA
PHYRPKLYFTSNGPVPEMAGQEEPFPEPDNQSKMKRSCENAEHVGLFTPNAGQHFRDEQRRRRSQYDRGTRLAAL
EEYDYETAIQHLYSTKTQ*
Coding >Hirsu2|2180
ATGCGCATCACCAGATCCTCATACCACAACATGGCGAGCCATCACAACCATGTCGACATCAACCGAATACGCGAT
GGTATAGATGTCCGCACGACGATCATGCTTCGAAATATCCCGAACAAGGTTGACCAGGCCATGCTGAAGCGCATT
ATCGACGAGTCGAGTTGGGGCAAGTATGACTTCATGTACTTGCGTATTGACTTCGCCAATGATTGCAACGTCGGG
TATGCGTTTATTAACTTTGTTGATCCCCTGGATATAATCGATGTCAGTAGAGGCCGGATTTCTCTCCTACTGCTT
GCTTACGATACCCAGTTCGTCGATGCTCGTGGTAACCAGCGCTGGAACTGCTTCAAGAGCGACAAGGTGGCTGAG
ATATCGTATGCGACCATCCAGGGCAAAGATTGCCTTGTACAGAAGTTCAGGAATAGCTCAGTCATGCTCGAGGCG
CCTCATTATCGGCCCAAGCTGTACTTCACCTCAAACGGTCCTGTGCCCGAGATGGCTGGCCAAGAGGAACCCTTT
CCGGAACCAGATAATCAATCGAAGATGAAACGGAGCTGCGAAAACGCGGAACACGTCGGTCTCTTTACGCCAAAC
GCAGGGCAGCACTTTCGAGACGAGCAACGACGAAGAAGATCCCAGTACGATCGCGGGACCCGACTGGCGGCGCTG
GAAGAGTACGATTATGAGACCGCCATCCAACATCTGTACAGTACGAAAACTCAGTAA
Transcript >Hirsu2|2180
ATGCGCATCACCAGATCCTCATACCACAACATGGCGAGCCATCACAACCATGTCGACATCAACCGAATACGCGAT
GGTATAGATGTCCGCACGACGATCATGCTTCGAAATATCCCGAACAAGGTTGACCAGGCCATGCTGAAGCGCATT
ATCGACGAGTCGAGTTGGGGCAAGTATGACTTCATGTACTTGCGTATTGACTTCGCCAATGATTGCAACGTCGGG
TATGCGTTTATTAACTTTGTTGATCCCCTGGATATAATCGATGTCAGTAGAGGCCGGATTTCTCTCCTACTGCTT
GCTTACGATACCCAGTTCGTCGATGCTCGTGGTAACCAGCGCTGGAACTGCTTCAAGAGCGACAAGGTGGCTGAG
ATATCGTATGCGACCATCCAGGGCAAAGATTGCCTTGTACAGAAGTTCAGGAATAGCTCAGTCATGCTCGAGGCG
CCTCATTATCGGCCCAAGCTGTACTTCACCTCAAACGGTCCTGTGCCCGAGATGGCTGGCCAAGAGGAACCCTTT
CCGGAACCAGATAATCAATCGAAGATGAAACGGAGCTGCGAAAACGCGGAACACGTCGGTCTCTTTACGCCAAAC
GCAGGGCAGCACTTTCGAGACGAGCAACGACGAAGAAGATCCCAGTACGATCGCGGGACCCGACTGGCGGCGCTG
GAAGAGTACGATTATGAGACCGCCATCCAACATCTGTACAGTACGAAAACTCAGTAA
Gene >Hirsu2|2180
ATGCGCATCACCAGATCCTCATACCACAACATGGCGAGCCATCACAACCATGTCGACATCAACCGAATACGCGAT
GGTATAGATGTCCGCACGACGGTGAGTTGCATAGCTTTCGTACTGACGGCCTTACCTGACGTCATCAGATCATGC
TTCGAAATATCCCGAACAAGGTTGACCAGGCCATGCTGAAGCGCATTATCGACGAGTCGAGTTGGGGCAAGTATG
ACTTCATGTACTTGCGTATTGACTTCGCCAATGATTGCAAGTAAGTATTGCCGCCGTCCATGAATGTCTTCGCTA
GCGGCCGTTGTGTATTGACGACTCTTCAATAGCGTCGGGTATGCGTTTATTAACTTTGTTGATGTAAGTTGATTC
TCTGAGAGGTCTAAAGGCTCCGTAGCCCATGCTAAGTTGGTTTAGCCCCTGGATATAATCGATGTCAGTAGAGGC
CGGATTTCTCTCCTACTGCTTGCTTACGATACCCAGTTCGTCGATGCTCGTGGTAACCAGCGCTGGTGAGTGGGT
CGCTGGCCGCAATGTTACCAAATTTACTCACCTGCTCATAGGAACTGCTTCAAGAGCGACAAGGTGGCTGAGATA
TCGTATGCGAGTAAGTAACCTCATCCCTTGTCACCCGCCCTCACAGCTAAGCTAAGGTGAACTATAGCCATCCAG
GGCAAAGATTGCCTTGTACAGAAGTTCAGGAATAGCTCAGTCATGCTCGAGGCGCCTCATTATCGGCCCAAGGTA
CGTACCGGCCCGCGCAATCTGGTCGATGGCCTCGTGACGGCCCCAGCCATGGCTTGCCACTCTCCTTACTATCTT
CATAGCTGTACTTCACCTCAAACGGTCCTGTGCCCGAGATGGCTGGCCAAGAGGAACCCTTTCCGGAACCAGATA
ATCAATCGAAGATGAAACGGAGCTGCGAAAACGCGGAACACGTCGGTGGGTTGCTGTTCTCTATCAGATGTGACT
CGATCGGCGGTTGACTATTTCCAAGGTCTCTTTACGCCAAACGCAGGGCAGCACTTTCGAGACGAGCAACGACGA
AGAAGATCCCAGTACGATCGCGGGACCCGACTGGCGGCGCTGGAAGAGTACGATTATGAGACCGCCATCCAACAT
CTGTACAGTACGAAAACTCAGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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