Protein ID | Hirsu2|2173 |
Gene name | |
Location | Contig_1501:3921..5787 |
Strand | - |
Gene length (bp) | 1866 |
Transcript length (bp) | 1797 |
Coding sequence length (bp) | 1797 |
Protein length (aa) | 599 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04037 | DUF382 | Domain of unknown function (DUF382) | 1.2E-59 | 155 | 281 |
PF04046 | PSP | PSP | 1.5E-16 | 290 | 335 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9UUI3|SA145_SCHPO | Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1 | 5 | 383 | 3.0E-105 |
sp|Q13435|SF3B2_HUMAN | Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2 | 59 | 574 | 2.0E-100 |
sp|Q02554|CUS1_YEAST | Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1 | 134 | 334 | 9.0E-49 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005634 | nucleus | Yes |
GO:0043227 | membrane-bounded organelle | No |
GO:0043226 | organelle | No |
GO:0043231 | intracellular membrane-bounded organelle | No |
GO:0043229 | intracellular organelle | No |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.1675 | 0.9151 | 0.0583 | 0.0296 | 0.059 | 0.001 | 0.0692 | 0.0112 | 0.008 | 0.0108 |
Orthofinder run ID | 4 |
Orthogroup | 1979 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2173 MAAPKMTKNQIRRAKRKELKKAQTEKHQREESTGAADYHQIAARSEDGEDDENVVRKLADTDLAITVETPSLDDE LADDPAFATYKDIFTKFGAPLGEDDVAREANAGNQGSVFFDEDDDIPDEDENQLGKTKLSKKKRKQMKTLSVAEL KAMVKHPEVIEWHDVSSADPRTLVQIKAQRNVVPVPTHWSLKREYLSSKRGIEKAPFRLPDFIAATGIAEMRDAV LEKEAEQTLKQKQRARVQPKMGRLDIDYQKLYDAFFRFQTKPELTRYGEVYYEGKEAEVDYQHFRPGELGDATKE ALGMPPGAPPPWLINQQRIGPPPSFPTLKIPGLNVPPPVGGTWGYHPGGWGKPPVDELNRPLYGGDVFGLNNQPV AQPQPGPPELPAAEPVERNLWGELQPHEEEESEEEGEEEEDGSEEGSQEAVAEMGGTETPGGYASTLAHNQGVQT SISGEMDLRKERPGYGTETPSGRSAFMVLREQKTQGGGSGLFGVGHQYDLSSTHHPTMPVLGAEDEGRKRKRPGD VDVALDVDSLNQNDGISKDAVRQKFEEGRQKEGIGSNWKHDQELADMIAAESRKRQKTEQDRMDRRKEGRGKR* |
Coding | >Hirsu2|2173 ATGGCGGCCCCTAAAATGACCAAAAACCAGATACGGCGGGCCAAGAGGAAGGAGCTGAAAAAAGCCCAGACAGAG AAGCATCAGCGGGAGGAATCTACTGGGGCTGCCGACTATCACCAGATAGCAGCGAGGTCCGAGGACGGAGAAGAC GATGAAAACGTTGTCAGGAAGCTTGCAGACACCGACCTAGCCATTACCGTGGAAACCCCGTCCCTCGATGACGAA CTCGCAGACGATCCCGCCTTTGCAACCTACAAAGACATTTTCACCAAGTTTGGCGCTCCTCTCGGAGAAGACGAC GTTGCCAGAGAGGCAAATGCGGGCAATCAAGGGAGCGTCTTTTTCGATGAAGACGACGACATACCTGACGAGGAC GAGAATCAGCTGGGCAAGACCAAGCTCTCCAAAAAGAAGCGCAAACAGATGAAGACACTGTCTGTCGCAGAGCTC AAGGCCATGGTCAAGCACCCCGAGGTTATCGAGTGGCACGATGTCTCTTCGGCCGATCCCCGGACCCTCGTGCAG ATCAAGGCCCAGCGTAACGTCGTCCCTGTTCCCACGCATTGGTCGCTGAAAAGAGAGTATCTGTCGTCCAAACGC GGCATCGAGAAGGCCCCGTTCCGACTGCCCGACTTCATAGCCGCCACCGGCATTGCCGAAATGCGGGATGCTGTC CTGGAAAAAGAAGCTGAGCAGACGCTCAAGCAGAAGCAGCGAGCCCGAGTCCAGCCGAAGATGGGAAGGCTTGAT ATTGACTATCAGAAGCTCTACGATGCCTTCTTTCGGTTTCAGACCAAGCCAGAGCTGACCCGCTACGGTGAAGTA TACTATGAGGGCAAAGAAGCCGAAGTTGACTACCAGCACTTCCGACCGGGAGAGTTGGGAGATGCGACCAAAGAG GCGCTTGGCATGCCTCCTGGCGCTCCTCCGCCCTGGTTGATCAATCAGCAGCGTATCGGCCCTCCCCCTTCCTTC CCGACCCTAAAAATTCCGGGTCTGAACGTCCCGCCCCCCGTCGGCGGCACATGGGGATATCACCCTGGCGGCTGG GGGAAGCCTCCTGTCGACGAATTAAATCGTCCACTATATGGTGGCGATGTGTTCGGCTTGAACAACCAGCCGGTC GCCCAACCCCAGCCTGGCCCGCCTGAGCTACCGGCGGCAGAACCCGTGGAGCGCAATCTCTGGGGCGAACTGCAG CCACATGAGGAAGAAGAGTCGGAGGAAGAGGGAGAAGAGGAAGAGGATGGTAGCGAGGAAGGCTCCCAAGAAGCG GTAGCCGAAATGGGGGGTACGGAAACGCCTGGAGGTTACGCCAGCACTCTGGCACACAACCAGGGTGTCCAAACA TCCATATCCGGGGAGATGGATCTCCGAAAAGAGCGCCCTGGCTATGGCACAGAAACACCGTCTGGTCGTTCCGCC TTCATGGTCCTCAGGGAGCAAAAGACTCAGGGTGGCGGAAGCGGTCTCTTCGGCGTCGGCCACCAATATGACTTG AGCTCGACTCATCACCCGACGATGCCTGTCCTCGGCGCCGAGGACGAGGGCCGCAAGCGCAAAAGGCCAGGTGAC GTGGATGTGGCCTTAGATGTCGATTCTCTGAACCAGAACGACGGCATCAGCAAGGACGCTGTTCGCCAGAAGTTC GAGGAAGGTAGGCAGAAAGAGGGAATCGGGTCGAATTGGAAGCACGACCAGGAGCTAGCCGACATGATTGCTGCC GAAAGCCGCAAACGCCAGAAGACGGAGCAGGATCGGATGGATCGTCGCAAGGAAGGACGGGGCAAACGCTGA |
Transcript | >Hirsu2|2173 ATGGCGGCCCCTAAAATGACCAAAAACCAGATACGGCGGGCCAAGAGGAAGGAGCTGAAAAAAGCCCAGACAGAG AAGCATCAGCGGGAGGAATCTACTGGGGCTGCCGACTATCACCAGATAGCAGCGAGGTCCGAGGACGGAGAAGAC GATGAAAACGTTGTCAGGAAGCTTGCAGACACCGACCTAGCCATTACCGTGGAAACCCCGTCCCTCGATGACGAA CTCGCAGACGATCCCGCCTTTGCAACCTACAAAGACATTTTCACCAAGTTTGGCGCTCCTCTCGGAGAAGACGAC GTTGCCAGAGAGGCAAATGCGGGCAATCAAGGGAGCGTCTTTTTCGATGAAGACGACGACATACCTGACGAGGAC GAGAATCAGCTGGGCAAGACCAAGCTCTCCAAAAAGAAGCGCAAACAGATGAAGACACTGTCTGTCGCAGAGCTC AAGGCCATGGTCAAGCACCCCGAGGTTATCGAGTGGCACGATGTCTCTTCGGCCGATCCCCGGACCCTCGTGCAG ATCAAGGCCCAGCGTAACGTCGTCCCTGTTCCCACGCATTGGTCGCTGAAAAGAGAGTATCTGTCGTCCAAACGC GGCATCGAGAAGGCCCCGTTCCGACTGCCCGACTTCATAGCCGCCACCGGCATTGCCGAAATGCGGGATGCTGTC CTGGAAAAAGAAGCTGAGCAGACGCTCAAGCAGAAGCAGCGAGCCCGAGTCCAGCCGAAGATGGGAAGGCTTGAT ATTGACTATCAGAAGCTCTACGATGCCTTCTTTCGGTTTCAGACCAAGCCAGAGCTGACCCGCTACGGTGAAGTA TACTATGAGGGCAAAGAAGCCGAAGTTGACTACCAGCACTTCCGACCGGGAGAGTTGGGAGATGCGACCAAAGAG GCGCTTGGCATGCCTCCTGGCGCTCCTCCGCCCTGGTTGATCAATCAGCAGCGTATCGGCCCTCCCCCTTCCTTC CCGACCCTAAAAATTCCGGGTCTGAACGTCCCGCCCCCCGTCGGCGGCACATGGGGATATCACCCTGGCGGCTGG GGGAAGCCTCCTGTCGACGAATTAAATCGTCCACTATATGGTGGCGATGTGTTCGGCTTGAACAACCAGCCGGTC GCCCAACCCCAGCCTGGCCCGCCTGAGCTACCGGCGGCAGAACCCGTGGAGCGCAATCTCTGGGGCGAACTGCAG CCACATGAGGAAGAAGAGTCGGAGGAAGAGGGAGAAGAGGAAGAGGATGGTAGCGAGGAAGGCTCCCAAGAAGCG GTAGCCGAAATGGGGGGTACGGAAACGCCTGGAGGTTACGCCAGCACTCTGGCACACAACCAGGGTGTCCAAACA TCCATATCCGGGGAGATGGATCTCCGAAAAGAGCGCCCTGGCTATGGCACAGAAACACCGTCTGGTCGTTCCGCC TTCATGGTCCTCAGGGAGCAAAAGACTCAGGGTGGCGGAAGCGGTCTCTTCGGCGTCGGCCACCAATATGACTTG AGCTCGACTCATCACCCGACGATGCCTGTCCTCGGCGCCGAGGACGAGGGCCGCAAGCGCAAAAGGCCAGGTGAC GTGGATGTGGCCTTAGATGTCGATTCTCTGAACCAGAACGACGGCATCAGCAAGGACGCTGTTCGCCAGAAGTTC GAGGAAGGTAGGCAGAAAGAGGGAATCGGGTCGAATTGGAAGCACGACCAGGAGCTAGCCGACATGATTGCTGCC GAAAGCCGCAAACGCCAGAAGACGGAGCAGGATCGGATGGATCGTCGCAAGGAAGGACGGGGCAAACGCTGA |
Gene | >Hirsu2|2173 ATGGCGGCCCCTAAAATGACCAAAAACCAGATACGGCGGGCCAAGAGGAAGGAGCTGAAAAAAGCCCAGACAGAG GTACGCTATGCGAAACCACTCGGAGCCACCTGTCTCTCGTTAAACCTGTTTGAATAACTCAATACCCAGAAGCAT CAGCGGGAGGAATCTACTGGGGCTGCCGACTATCACCAGATAGCAGCGAGGTCCGAGGACGGAGAAGACGATGAA AACGTTGTCAGGAAGCTTGCAGACACCGACCTAGCCATTACCGTGGAAACCCCGTCCCTCGATGACGAACTCGCA GACGATCCCGCCTTTGCAACCTACAAAGACATTTTCACCAAGTTTGGCGCTCCTCTCGGAGAAGACGACGTTGCC AGAGAGGCAAATGCGGGCAATCAAGGGAGCGTCTTTTTCGATGAAGACGACGACATACCTGACGAGGACGAGAAT CAGCTGGGCAAGACCAAGCTCTCCAAAAAGAAGCGCAAACAGATGAAGACACTGTCTGTCGCAGAGCTCAAGGCC ATGGTCAAGCACCCCGAGGTTATCGAGTGGCACGATGTCTCTTCGGCCGATCCCCGGACCCTCGTGCAGATCAAG GCCCAGCGTAACGTCGTCCCTGTTCCCACGCATTGGTCGCTGAAAAGAGAGTATCTGTCGTCCAAACGCGGCATC GAGAAGGCCCCGTTCCGACTGCCCGACTTCATAGCCGCCACCGGCATTGCCGAAATGCGGGATGCTGTCCTGGAA AAAGAAGCTGAGCAGACGCTCAAGCAGAAGCAGCGAGCCCGAGTCCAGCCGAAGATGGGAAGGCTTGATATTGAC TATCAGAAGCTCTACGATGCCTTCTTTCGGTTTCAGACCAAGCCAGAGCTGACCCGCTACGGTGAAGTATACTAT GAGGGCAAAGAAGCCGAAGTTGACTACCAGCACTTCCGACCGGGAGAGTTGGGAGATGCGACCAAAGAGGCGCTT GGCATGCCTCCTGGCGCTCCTCCGCCCTGGTTGATCAATCAGCAGCGTATCGGCCCTCCCCCTTCCTTCCCGACC CTAAAAATTCCGGGTCTGAACGTCCCGCCCCCCGTCGGCGGCACATGGGGATATCACCCTGGCGGCTGGGGGAAG CCTCCTGTCGACGAATTAAATCGTCCACTATATGGTGGCGATGTGTTCGGCTTGAACAACCAGCCGGTCGCCCAA CCCCAGCCTGGCCCGCCTGAGCTACCGGCGGCAGAACCCGTGGAGCGCAATCTCTGGGGCGAACTGCAGCCACAT GAGGAAGAAGAGTCGGAGGAAGAGGGAGAAGAGGAAGAGGATGGTAGCGAGGAAGGCTCCCAAGAAGCGGTAGCC GAAATGGGGGGTACGGAAACGCCTGGAGGTTACGCCAGCACTCTGGCACACAACCAGGGTGTCCAAACATCCATA TCCGGGGAGATGGATCTCCGAAAAGAGCGCCCTGGCTATGGCACAGAAACACCGTCTGGTCGTTCCGCCTTCATG GTCCTCAGGGAGCAAAAGACTCAGGGTGGCGGAAGCGGTCTCTTCGGCGTCGGCCACCAATATGACTTGAGCTCG ACTCATCACCCGACGATGCCTGTCCTCGGCGCCGAGGACGAGGGCCGCAAGCGCAAAAGGCCAGGTGACGTGGAT GTGGCCTTAGATGTCGATTCTCTGAACCAGAACGACGGCATCAGCAAGGACGCTGTTCGCCAGAAGTTCGAGGAA GGTAGGCAGAAAGAGGGAATCGGGTCGAATTGGAAGCACGACCAGGAGCTAGCCGACATGATTGCTGCCGAAAGC CGCAAACGCCAGAAGACGGAGCAGGATCGGATGGATCGTCGCAAGGAAGGACGGGGCAAACGCTGA |