Protein ID | Hirsu2|2161 |
Gene name | |
Location | Contig_150:12166..13129 |
Strand | - |
Gene length (bp) | 963 |
Transcript length (bp) | 906 |
Coding sequence length (bp) | 906 |
Protein length (aa) | 302 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01822 | WSC | WSC domain | 1.9E-10 | 61 | 133 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P87179|WSC1_SCHPO | Cell wall integrity and stress response component 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wsc1 PE=1 SV=3 | 207 | 300 | 5.0E-09 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide | 0.1235 | 0.0837 | 0.5734 | 0.6619 | 0.1221 | 0.0152 | 0.0716 | 0.4143 | 0.1649 | 0.0143 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 20 | 0.994408 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 207 | 229 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1971 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2161 MRCSTIACAALLAAAQACGAADSPTHLVVDKRATLVQRQENDPPKQSPSTFPRPNAPTSHGCYKSAGNMTTHNVE NMSSGSCNEKCKSGKFSVSGLQGPNCFCGFAYPPDNAVVDDKKCGYPCPSYPLEACGGLGQPGFWSVFNTGVNVN PPTYDEASSTSSSASQPTSPPKSDDPDRPAPTAVQSPDSPPPSSPPPDNKGGAKTGGIVAGCVAAAVVALLIGAA IFFFVRRKRNAEIEEEHRRNAAVNAFINGSKPPGSSGSISMTDARLDPVLANRRMSDGSIADNEDYSRRILRVTN A* |
Coding | >Hirsu2|2161 ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTTACCAAT GCATGA |
Transcript | >Hirsu2|2161 ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTTACCAAT GCATGA |
Gene | >Hirsu2|2161 ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTATGATGC CGCGCCCACCTTCCTGTCTGCCTTTTATCTGACCAAAGCTTCGCACAGGTTACCAATGCATGA |