Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2161
Gene name
LocationContig_150:12166..13129
Strand-
Gene length (bp)963
Transcript length (bp)906
Coding sequence length (bp)906
Protein length (aa) 302

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01822 WSC WSC domain 1.9E-10 61 133

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P87179|WSC1_SCHPO Cell wall integrity and stress response component 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wsc1 PE=1 SV=3 207 300 5.0E-09

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Signal peptide 0.1235 0.0837 0.5734 0.6619 0.1221 0.0152 0.0716 0.4143 0.1649 0.0143

SignalP

SignalP signal predicted Location Score
Yes 1 - 20 0.994408

Transmembrane Domains

Domain # Start End Length
1 207 229 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1971
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6523
Ophiocordyceps australis map64 (Brazil) OphauB2|7621
Ophiocordyceps camponoti-floridani Ophcf2|00553
Ophiocordyceps camponoti-rufipedis Ophun1|4809
Ophiocordyceps kimflemingae Ophio5|6318
Ophiocordyceps subramaniannii Hirsu2|2161 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2161
MRCSTIACAALLAAAQACGAADSPTHLVVDKRATLVQRQENDPPKQSPSTFPRPNAPTSHGCYKSAGNMTTHNVE
NMSSGSCNEKCKSGKFSVSGLQGPNCFCGFAYPPDNAVVDDKKCGYPCPSYPLEACGGLGQPGFWSVFNTGVNVN
PPTYDEASSTSSSASQPTSPPKSDDPDRPAPTAVQSPDSPPPSSPPPDNKGGAKTGGIVAGCVAAAVVALLIGAA
IFFFVRRKRNAEIEEEHRRNAAVNAFINGSKPPGSSGSISMTDARLDPVLANRRMSDGSIADNEDYSRRILRVTN
A*
Coding >Hirsu2|2161
ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT
CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG
TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG
AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC
TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG
TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT
CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT
CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG
GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC
ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC
TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG
GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTTACCAAT
GCATGA
Transcript >Hirsu2|2161
ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT
CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG
TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG
AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC
TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG
TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT
CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT
CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG
GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC
ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC
TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG
GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTTACCAAT
GCATGA
Gene >Hirsu2|2161
ATGCGGTGCTCGACAATCGCCTGCGCCGCCCTGCTGGCGGCGGCACAAGCCTGCGGCGCCGCCGACTCGCCTACT
CACCTCGTCGTCGACAAGCGTGCCACTCTCGTCCAGCGCCAAGAAAACGACCCCCCGAAACAGAGCCCTTCGACG
TTTCCTCGGCCGAACGCGCCCACGTCCCATGGCTGCTACAAGTCGGCTGGCAACATGACGACGCACAATGTCGAG
AACATGTCGTCCGGCTCCTGCAACGAAAAGTGCAAGTCGGGCAAATTCTCCGTCTCGGGCCTCCAGGGCCCCAAC
TGCTTCTGTGGCTTTGCCTATCCGCCAGACAACGCCGTCGTCGACGACAAGAAATGCGGCTACCCATGTCCCTCG
TACCCCCTCGAAGCCTGCGGCGGACTCGGCCAGCCTGGCTTCTGGTCCGTCTTCAACACGGGCGTCAACGTCAAT
CCGCCGACCTACGACGAAGCCTCTTCCACCTCGTCGAGCGCGTCCCAGCCCACGAGTCCGCCCAAGTCGGACGAT
CCCGATCGTCCTGCGCCCACCGCCGTCCAGAGCCCGGACTCGCCCCCGCCGTCGAGTCCCCCGCCCGACAACAAG
GGCGGCGCCAAGACGGGTGGCATTGTGGCGGGCTGCGTCGCCGCCGCCGTCGTCGCCCTCCTCATCGGCGCCGCC
ATCTTCTTCTTCGTGCGACGGAAGCGCAACGCCGAGATCGAGGAGGAGCATCGCCGCAATGCCGCCGTCAATGCC
TTCATCAATGGCTCCAAGCCGCCGGGCAGCAGTGGAAGCATCTCCATGACCGACGCCCGGCTCGACCCCGTCCTG
GCCAACCGTCGCATGAGCGACGGCAGCATTGCCGACAACGAAGACTACTCGCGCAGGATCCTTCGGGTATGATGC
CGCGCCCACCTTCCTGTCTGCCTTTTATCTGACCAAAGCTTCGCACAGGTTACCAATGCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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