Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2156
Gene name
LocationContig_15:75602..76218
Strand-
Gene length (bp)616
Transcript length (bp)459
Coding sequence length (bp)459
Protein length (aa) 153

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 8.6E-12 18 142

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0030976 thiamine pyrophosphate binding Yes
GO:0036094 small molecule binding No
GO:0043168 anion binding No
GO:0019842 vitamin binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:1901681 sulfur compound binding No
GO:0043169 cation binding No
GO:0003674 molecular_function No
GO:0050997 quaternary ammonium group binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5842 0.6196 0.1478 0.1543 0.3352 0.0662 0.0661 0.1977 0.237 0.0066

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7516
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2156 (this protein)
Ophiocordyceps subramaniannii Hirsu2|3566

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2156
MALADLGGPGPEGGPGLVCQIVGDGSFMCAAPSSALWVASKYKIPVLTIVLNNGGWKAPRNSAQLVYPDGLSATA
SDDEINISFRPTPNYAALAEAAAGSEAGWSPAPDRAAPDAWMQGVRVRTVRELREALARAATRLVDEKRGMLVEI
LL*
Coding >Hirsu2|2156
ATGGCCCTGGCCGACCTCGGCGGCCCCGGCCCTGAGGGGGGCCCGGGCCTCGTGTGCCAGATCGTGGGCGACGGA
AGCTTCATGTGCGCCGCCCCGTCGAGCGCCCTGTGGGTGGCGAGCAAGTATAAGATTCCCGTCTTGACCATTGTC
TTGAACAACGGGGGCTGGAAAGCGCCGCGAAACTCGGCCCAGCTCGTCTACCCGGACGGCCTCAGCGCCACCGCC
TCCGACGACGAAATAAACATCTCCTTCCGCCCCACGCCCAACTACGCTGCTCTGGCCGAGGCCGCCGCCGGCTCC
GAGGCCGGCTGGTCGCCTGCGCCGGATCGCGCCGCGCCGGATGCGTGGATGCAGGGCGTGCGGGTCCGCACGGTG
CGCGAGCTCAGGGAGGCGCTCGCGCGTGCCGCGACGAGGCTTGTCGACGAGAAGAGGGGGATGCTGGTCGAGATA
CTGCTGTAG
Transcript >Hirsu2|2156
ATGGCCCTGGCCGACCTCGGCGGCCCCGGCCCTGAGGGGGGCCCGGGCCTCGTGTGCCAGATCGTGGGCGACGGA
AGCTTCATGTGCGCCGCCCCGTCGAGCGCCCTGTGGGTGGCGAGCAAGTATAAGATTCCCGTCTTGACCATTGTC
TTGAACAACGGGGGCTGGAAAGCGCCGCGAAACTCGGCCCAGCTCGTCTACCCGGACGGCCTCAGCGCCACCGCC
TCCGACGACGAAATAAACATCTCCTTCCGCCCCACGCCCAACTACGCTGCTCTGGCCGAGGCCGCCGCCGGCTCC
GAGGCCGGCTGGTCGCCTGCGCCGGATCGCGCCGCGCCGGATGCGTGGATGCAGGGCGTGCGGGTCCGCACGGTG
CGCGAGCTCAGGGAGGCGCTCGCGCGTGCCGCGACGAGGCTTGTCGACGAGAAGAGGGGGATGCTGGTCGAGATA
CTGCTGTAG
Gene >Hirsu2|2156
ATGGCCCTGGCCGACCTCGGCGGCCCCGGCCCTGAGGGGGGCCCGGGCCTCGTGTGCCAGATCGTGGGCGACGGA
AGCTTCATGTGCGCCGCCCCGTCGAGCGCCCTGTGGGTGGCGAGCAAGTATAAGATTCCCGTCTTGACCATTGTC
TTGAACAACGGGGGTGAGTTTCGCCCACCTCTCTACCTCCCTCCCTTCCTCCCTCTTTCTCATACCCTGACCTCT
CCCACTCTCTCCCTGTCTCTTACCATCCCCTGATCTCTCCAACTCTCTACCCACCTGCGTGCGTCGAGCCTCGGC
TTCGGCTGACCGGTTTGCAGGCTGGAAAGCGCCGCGAAACTCGGCCCAGCTCGTCTACCCGGACGGCCTCAGCGC
CACCGCCTCCGACGACGAAATAAACATCTCCTTCCGCCCCACGCCCAACTACGCTGCTCTGGCCGAGGCCGCCGC
CGGCTCCGAGGCCGGCTGGTCGCCTGCGCCGGATCGCGCCGCGCCGGATGCGTGGATGCAGGGCGTGCGGGTCCG
CACGGTGCGCGAGCTCAGGGAGGCGCTCGCGCGTGCCGCGACGAGGCTTGTCGACGAGAAGAGGGGGATGCTGGT
CGAGATACTGCTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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