Protein ID | Hirsu2|2155 |
Gene name | |
Location | Contig_15:72859..74833 |
Strand | + |
Gene length (bp) | 1974 |
Transcript length (bp) | 1974 |
Coding sequence length (bp) | 1974 |
Protein length (aa) | 658 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11374 | DUF3176 | Protein of unknown function (DUF3176) | 5.2E-34 | 58 | 172 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1036 | 0.0502 | 0.0934 | 0.7374 | 0.0365 | 0.0083 | 0.2 | 0.6833 | 0.4956 | 0.0087 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 39 | 61 | 22 |
2 | 76 | 98 | 22 |
3 | 142 | 164 | 22 |
4 | 568 | 590 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 395 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2155 MSDSTSSTAAVTKTSSGLIKPRPTLAAAIDDAGLRVLRLWSAEIASLVAAAGLVAAIVIILARYDGHELPNWPYS INLNTVIALLTLCLRAALVIVAAEVIGQSKWTWFSDGATRPLANFQTFDEASRGLLGSFKLLGLLRLSFRGSPLA VAAAVTTILSLAISPFSQQAIKTVPCGRVSSADGAKIPVALEIPGSDGSFANGITQSKYSLGPKVRGALLSGITN PGGNDSAVQPGCASGNCTFPEPFGVPHSTIGLCAQCMDTSPLLRFTRQTDPKALPPNVDSVNLTLGEIEMSLGIQ RPLLVVRPSNMSFAESIMTPEFRETAGHACSNISVLSWSSLKGPVCTDTSYRPECVMATSCAIYPCMKDIKVGVS GGRLEDHVVRTTPARPNSRSVRNSPFPNLYAVKSPCVVEGRLYDATNFSLVPVDPNKRKFVMVPVDGKDVDVPSD CLYAVNGDYWYGLGSFLSRELLFGVCRDTMNGREHIVCNQTWWLYPFYNSGKASFDSINGVFQDMATATTNFFRT DGWGPVHNSTVYKERNDSSLFKLFLRGQVHESTICMRLEWPWLLLPAILCLTTIALLIAMLIFNVRNSHQPVWKS STLPLLFFGLDTLEPDEGAHADDLEHLDRQAKKMRATLDLDSPLARAALVNLDEPDS* |
Coding | >Hirsu2|2155 ATGTCTGACTCGACCTCTTCGACGGCCGCAGTCACCAAGACGAGCTCGGGCCTGATCAAGCCCCGGCCGACGCTC GCTGCCGCCATAGACGATGCCGGCCTGCGCGTCCTCCGCCTCTGGAGCGCCGAGATCGCCTCGCTCGTCGCCGCG GCCGGCCTCGTCGCCGCCATCGTCATCATCTTGGCCCGCTACGACGGCCACGAGCTGCCGAACTGGCCCTACAGT ATCAACCTCAACACCGTCATCGCGCTGCTAACGCTGTGCCTGCGCGCCGCCCTCGTCATCGTCGCCGCCGAGGTC ATCGGCCAGTCCAAGTGGACCTGGTTCTCGGACGGGGCGACGCGACCGCTGGCCAACTTCCAGACCTTCGACGAG GCCAGCCGCGGCCTGCTCGGCTCCTTCAAGCTACTCGGCCTGCTACGGCTCAGCTTCCGCGGCAGCCCGCTGGCC GTGGCCGCGGCCGTCACCACCATCCTCAGCCTCGCCATCAGCCCCTTCTCCCAGCAGGCCATCAAGACGGTGCCG TGCGGCCGCGTGAGCTCGGCTGACGGCGCCAAGATCCCCGTCGCCTTGGAGATTCCTGGCTCCGACGGCTCCTTT GCCAACGGCATCACCCAGTCCAAGTACAGCCTGGGGCCCAAGGTCCGGGGCGCCCTGCTCTCCGGCATCACCAAC CCCGGCGGGAACGACAGCGCCGTTCAGCCGGGGTGCGCTAGCGGCAACTGTACCTTTCCCGAGCCCTTTGGCGTC CCCCACTCGACCATCGGGCTCTGTGCCCAGTGCATGGACACGAGTCCGCTGCTGCGGTTCACCCGGCAGACGGAC CCCAAGGCCCTCCCGCCCAATGTCGACTCTGTCAACCTCACACTGGGCGAGATCGAGATGAGTCTGGGCATCCAG AGGCCGTTGCTCGTCGTCAGGCCGTCCAACATGTCCTTTGCCGAGTCCATCATGACTCCCGAGTTCAGGGAGACC GCCGGGCACGCCTGCAGCAACATCTCTGTCTTGTCGTGGTCCTCTTTGAAGGGCCCGGTCTGCACCGACACCTCT TACAGGCCCGAGTGCGTCATGGCCACCTCATGCGCGATATATCCTTGCATGAAAGACATCAAGGTCGGCGTTAGC GGCGGCCGGCTGGAGGACCACGTCGTCAGGACGACGCCGGCGCGGCCAAACTCGCGAAGCGTCAGGAACTCGCCA TTTCCGAACCTTTACGCCGTCAAGAGCCCGTGTGTGGTGGAAGGGCGGCTGTATGACGCGACTAACTTTTCCCTC GTTCCTGTCGACCCGAACAAGAGGAAGTTTGTCATGGTTCCGGTCGACGGAAAAGACGTCGACGTGCCATCCGAC TGCCTGTACGCCGTGAACGGCGACTACTGGTACGGCCTCGGCAGCTTCCTTAGCCGGGAGCTTCTATTTGGCGTC TGCAGGGATACCATGAACGGCCGAGAGCACATCGTCTGCAACCAGACCTGGTGGCTCTATCCGTTCTACAACAGC GGCAAGGCTTCCTTCGACTCGATCAATGGCGTCTTCCAGGACATGGCCACGGCCACAACCAACTTCTTCCGCACC GACGGATGGGGCCCCGTGCACAACTCGACCGTTTACAAAGAGCGCAACGACTCGAGCCTCTTCAAGCTGTTCCTC CGCGGCCAGGTCCACGAGTCGACCATCTGCATGCGCCTCGAGTGGCCTTGGCTGCTGCTGCCGGCCATCTTGTGC CTCACGACCATTGCACTCCTGATTGCCATGCTCATTTTCAATGTCCGCAACAGCCATCAGCCCGTCTGGAAGTCG AGTACGCTTCCCCTCCTGTTCTTCGGCCTCGATACGCTGGAGCCGGACGAGGGGGCGCACGCCGACGACCTGGAA CACCTGGACCGCCAGGCCAAGAAGATGAGGGCCACTCTTGATCTGGACAGTCCGCTGGCCCGCGCTGCCCTGGTC AACCTAGACGAGCCAGACAGCTGA |
Transcript | >Hirsu2|2155 ATGTCTGACTCGACCTCTTCGACGGCCGCAGTCACCAAGACGAGCTCGGGCCTGATCAAGCCCCGGCCGACGCTC GCTGCCGCCATAGACGATGCCGGCCTGCGCGTCCTCCGCCTCTGGAGCGCCGAGATCGCCTCGCTCGTCGCCGCG GCCGGCCTCGTCGCCGCCATCGTCATCATCTTGGCCCGCTACGACGGCCACGAGCTGCCGAACTGGCCCTACAGT ATCAACCTCAACACCGTCATCGCGCTGCTAACGCTGTGCCTGCGCGCCGCCCTCGTCATCGTCGCCGCCGAGGTC ATCGGCCAGTCCAAGTGGACCTGGTTCTCGGACGGGGCGACGCGACCGCTGGCCAACTTCCAGACCTTCGACGAG GCCAGCCGCGGCCTGCTCGGCTCCTTCAAGCTACTCGGCCTGCTACGGCTCAGCTTCCGCGGCAGCCCGCTGGCC GTGGCCGCGGCCGTCACCACCATCCTCAGCCTCGCCATCAGCCCCTTCTCCCAGCAGGCCATCAAGACGGTGCCG TGCGGCCGCGTGAGCTCGGCTGACGGCGCCAAGATCCCCGTCGCCTTGGAGATTCCTGGCTCCGACGGCTCCTTT GCCAACGGCATCACCCAGTCCAAGTACAGCCTGGGGCCCAAGGTCCGGGGCGCCCTGCTCTCCGGCATCACCAAC CCCGGCGGGAACGACAGCGCCGTTCAGCCGGGGTGCGCTAGCGGCAACTGTACCTTTCCCGAGCCCTTTGGCGTC CCCCACTCGACCATCGGGCTCTGTGCCCAGTGCATGGACACGAGTCCGCTGCTGCGGTTCACCCGGCAGACGGAC CCCAAGGCCCTCCCGCCCAATGTCGACTCTGTCAACCTCACACTGGGCGAGATCGAGATGAGTCTGGGCATCCAG AGGCCGTTGCTCGTCGTCAGGCCGTCCAACATGTCCTTTGCCGAGTCCATCATGACTCCCGAGTTCAGGGAGACC GCCGGGCACGCCTGCAGCAACATCTCTGTCTTGTCGTGGTCCTCTTTGAAGGGCCCGGTCTGCACCGACACCTCT TACAGGCCCGAGTGCGTCATGGCCACCTCATGCGCGATATATCCTTGCATGAAAGACATCAAGGTCGGCGTTAGC GGCGGCCGGCTGGAGGACCACGTCGTCAGGACGACGCCGGCGCGGCCAAACTCGCGAAGCGTCAGGAACTCGCCA TTTCCGAACCTTTACGCCGTCAAGAGCCCGTGTGTGGTGGAAGGGCGGCTGTATGACGCGACTAACTTTTCCCTC GTTCCTGTCGACCCGAACAAGAGGAAGTTTGTCATGGTTCCGGTCGACGGAAAAGACGTCGACGTGCCATCCGAC TGCCTGTACGCCGTGAACGGCGACTACTGGTACGGCCTCGGCAGCTTCCTTAGCCGGGAGCTTCTATTTGGCGTC TGCAGGGATACCATGAACGGCCGAGAGCACATCGTCTGCAACCAGACCTGGTGGCTCTATCCGTTCTACAACAGC GGCAAGGCTTCCTTCGACTCGATCAATGGCGTCTTCCAGGACATGGCCACGGCCACAACCAACTTCTTCCGCACC GACGGATGGGGCCCCGTGCACAACTCGACCGTTTACAAAGAGCGCAACGACTCGAGCCTCTTCAAGCTGTTCCTC CGCGGCCAGGTCCACGAGTCGACCATCTGCATGCGCCTCGAGTGGCCTTGGCTGCTGCTGCCGGCCATCTTGTGC CTCACGACCATTGCACTCCTGATTGCCATGCTCATTTTCAATGTCCGCAACAGCCATCAGCCCGTCTGGAAGTCG AGTACGCTTCCCCTCCTGTTCTTCGGCCTCGATACGCTGGAGCCGGACGAGGGGGCGCACGCCGACGACCTGGAA CACCTGGACCGCCAGGCCAAGAAGATGAGGGCCACTCTTGATCTGGACAGTCCGCTGGCCCGCGCTGCCCTGGTC AACCTAGACGAGCCAGACAGCTGA |
Gene | >Hirsu2|2155 ATGTCTGACTCGACCTCTTCGACGGCCGCAGTCACCAAGACGAGCTCGGGCCTGATCAAGCCCCGGCCGACGCTC GCTGCCGCCATAGACGATGCCGGCCTGCGCGTCCTCCGCCTCTGGAGCGCCGAGATCGCCTCGCTCGTCGCCGCG GCCGGCCTCGTCGCCGCCATCGTCATCATCTTGGCCCGCTACGACGGCCACGAGCTGCCGAACTGGCCCTACAGT ATCAACCTCAACACCGTCATCGCGCTGCTAACGCTGTGCCTGCGCGCCGCCCTCGTCATCGTCGCCGCCGAGGTC ATCGGCCAGTCCAAGTGGACCTGGTTCTCGGACGGGGCGACGCGACCGCTGGCCAACTTCCAGACCTTCGACGAG GCCAGCCGCGGCCTGCTCGGCTCCTTCAAGCTACTCGGCCTGCTACGGCTCAGCTTCCGCGGCAGCCCGCTGGCC GTGGCCGCGGCCGTCACCACCATCCTCAGCCTCGCCATCAGCCCCTTCTCCCAGCAGGCCATCAAGACGGTGCCG TGCGGCCGCGTGAGCTCGGCTGACGGCGCCAAGATCCCCGTCGCCTTGGAGATTCCTGGCTCCGACGGCTCCTTT GCCAACGGCATCACCCAGTCCAAGTACAGCCTGGGGCCCAAGGTCCGGGGCGCCCTGCTCTCCGGCATCACCAAC CCCGGCGGGAACGACAGCGCCGTTCAGCCGGGGTGCGCTAGCGGCAACTGTACCTTTCCCGAGCCCTTTGGCGTC CCCCACTCGACCATCGGGCTCTGTGCCCAGTGCATGGACACGAGTCCGCTGCTGCGGTTCACCCGGCAGACGGAC CCCAAGGCCCTCCCGCCCAATGTCGACTCTGTCAACCTCACACTGGGCGAGATCGAGATGAGTCTGGGCATCCAG AGGCCGTTGCTCGTCGTCAGGCCGTCCAACATGTCCTTTGCCGAGTCCATCATGACTCCCGAGTTCAGGGAGACC GCCGGGCACGCCTGCAGCAACATCTCTGTCTTGTCGTGGTCCTCTTTGAAGGGCCCGGTCTGCACCGACACCTCT TACAGGCCCGAGTGCGTCATGGCCACCTCATGCGCGATATATCCTTGCATGAAAGACATCAAGGTCGGCGTTAGC GGCGGCCGGCTGGAGGACCACGTCGTCAGGACGACGCCGGCGCGGCCAAACTCGCGAAGCGTCAGGAACTCGCCA TTTCCGAACCTTTACGCCGTCAAGAGCCCGTGTGTGGTGGAAGGGCGGCTGTATGACGCGACTAACTTTTCCCTC GTTCCTGTCGACCCGAACAAGAGGAAGTTTGTCATGGTTCCGGTCGACGGAAAAGACGTCGACGTGCCATCCGAC TGCCTGTACGCCGTGAACGGCGACTACTGGTACGGCCTCGGCAGCTTCCTTAGCCGGGAGCTTCTATTTGGCGTC TGCAGGGATACCATGAACGGCCGAGAGCACATCGTCTGCAACCAGACCTGGTGGCTCTATCCGTTCTACAACAGC GGCAAGGCTTCCTTCGACTCGATCAATGGCGTCTTCCAGGACATGGCCACGGCCACAACCAACTTCTTCCGCACC GACGGATGGGGCCCCGTGCACAACTCGACCGTTTACAAAGAGCGCAACGACTCGAGCCTCTTCAAGCTGTTCCTC CGCGGCCAGGTCCACGAGTCGACCATCTGCATGCGCCTCGAGTGGCCTTGGCTGCTGCTGCCGGCCATCTTGTGC CTCACGACCATTGCACTCCTGATTGCCATGCTCATTTTCAATGTCCGCAACAGCCATCAGCCCGTCTGGAAGTCG AGTACGCTTCCCCTCCTGTTCTTCGGCCTCGATACGCTGGAGCCGGACGAGGGGGCGCACGCCGACGACCTGGAA CACCTGGACCGCCAGGCCAAGAAGATGAGGGCCACTCTTGATCTGGACAGTCCGCTGGCCCGCGCTGCCCTGGTC AACCTAGACGAGCCAGACAGCTGA |