© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|215 |
| Gene name | |
| Location | Contig_1038:8376..8971 |
| Strand | - |
| Gene length (bp) | 595 |
| Transcript length (bp) | 432 |
| Coding sequence length (bp) | 432 |
| Protein length (aa) | 144 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02966 | DIM1 | Mitosis protein DIM1 | 6.6E-71 | 5 | 137 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P83877|TXN4A_MOUSE | Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1 | 3 | 143 | 3.0E-82 |
| sp|P83876|TXN4A_HUMAN | Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1 | 3 | 143 | 3.0E-82 |
| sp|P87215|DIMI_SCHPO | Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1 | 3 | 143 | 3.0E-79 |
| sp|Q9FE62|YLS8_ARATH | Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1 | 3 | 143 | 9.0E-78 |
| sp|Q75BD8|DIB1_ASHGO | Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1 | 1 | 140 | 2.0E-71 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P83877|TXN4A_MOUSE | Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1 | 3 | 143 | 3.0E-82 |
| sp|P83876|TXN4A_HUMAN | Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1 | 3 | 143 | 3.0E-82 |
| sp|P87215|DIMI_SCHPO | Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1 | 3 | 143 | 3.0E-79 |
| sp|Q9FE62|YLS8_ARATH | Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1 | 3 | 143 | 9.0E-78 |
| sp|Q75BD8|DIB1_ASHGO | Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1 | 1 | 140 | 2.0E-71 |
| sp|Q06819|DIB1_YEAST | Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIB1 PE=1 SV=1 | 1 | 140 | 5.0E-68 |
| sp|Q6FMI2|DIB1_CANGA | Spliceosomal protein DIB1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIB1 PE=3 SV=1 | 8 | 140 | 1.0E-62 |
| sp|Q553S5|TXN4A_DICDI | Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4 | 1 | 143 | 7.0E-58 |
| sp|Q8BUH1|TXN4B_MOUSE | Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=2 | 3 | 143 | 2.0E-31 |
| sp|Q9NX01|TXN4B_HUMAN | Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1 | 3 | 143 | 5.0E-31 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | Yes |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | Yes |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0120114 | Sm-like protein family complex | No |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0097526 | spliceosomal tri-snRNP complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0030532 | small nuclear ribonucleoprotein complex | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0097525 | spliceosomal snRNP complex | No |
| GO:0006397 | mRNA processing | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008380 | RNA splicing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0000375 | RNA splicing, via transesterification reactions | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.587 | 0.6091 | 0.0307 | 0.3954 | 0.0253 | 0.0007 | 0.521 | 0.1696 | 0.3377 | 0.0053 |
| Orthofinder run ID | 4 |
| Orthogroup | 1967 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|215 MGSVVIPHLNSGWHVDQAILSEEERLVVIRFGRDWDPDCMCQDEVLYKIADKVKSFAVVYVCDIDQVPDFNQMYE LYDPCTIMFFFRNKHIMCDFGTGNNNKLNWVLEDKQELIDIIETVYRGAKKGRGLVVSPKDYSTRHRY* |
| Coding | >Hirsu2|215 ATGGGCTCCGTCGTCATCCCCCATCTCAACTCCGGCTGGCACGTCGACCAGGCCATCCTCAGCGAGGAGGAGCGC CTGGTCGTCATCCGCTTCGGCCGCGACTGGGACCCGGACTGCATGTGCCAGGACGAGGTGCTCTACAAGATCGCC GACAAGGTCAAGAGCTTTGCCGTCGTCTACGTCTGCGACATCGACCAGGTCCCCGACTTCAACCAGATGTACGAG CTTTACGATCCGTGCACCATCATGTTCTTCTTCCGCAACAAGCACATCATGTGCGACTTCGGCACCGGCAACAAC AATAAGCTCAACTGGGTCCTCGAGGACAAGCAGGAGCTCATCGACATCATCGAGACGGTCTACCGCGGCGCCAAA AAGGGCAGAGGTCTCGTCGTCAGCCCCAAGGACTACTCGACCCGCCACCGCTACTGA |
| Transcript | >Hirsu2|215 ATGGGCTCCGTCGTCATCCCCCATCTCAACTCCGGCTGGCACGTCGACCAGGCCATCCTCAGCGAGGAGGAGCGC CTGGTCGTCATCCGCTTCGGCCGCGACTGGGACCCGGACTGCATGTGCCAGGACGAGGTGCTCTACAAGATCGCC GACAAGGTCAAGAGCTTTGCCGTCGTCTACGTCTGCGACATCGACCAGGTCCCCGACTTCAACCAGATGTACGAG CTTTACGATCCGTGCACCATCATGTTCTTCTTCCGCAACAAGCACATCATGTGCGACTTCGGCACCGGCAACAAC AATAAGCTCAACTGGGTCCTCGAGGACAAGCAGGAGCTCATCGACATCATCGAGACGGTCTACCGCGGCGCCAAA AAGGGCAGAGGTCTCGTCGTCAGCCCCAAGGACTACTCGACCCGCCACCGCTACTGA |
| Gene | >Hirsu2|215 ATGGGCTCCGTCGTCATCCCCCATCTCAACTCCGGCTGGCACGTCGACCAGGCCATCCTCAGCGAGGAGGAGCGC CTGGTCGTCATCCGCTTCGGCCGCGACTGGGACCCGGACTGCATGTGCCAGGACGAGGTGCTCTACAAGATCGCC GACAAGGTCAAGAGCTTTGCCGTCGTCTACGTCTGCGACATCGACCAGGTCCCCGACTTCAACCAGATGTACGGT ACGTTTTGCGGGCCGACGGCCGTGTCGACCCTGGTGCCGCTGCTGCTGACTGACGCGCCGTCCTCGCCGCCTCCA GAGCTTTACGATCCGTGCACCATCATGTTCTTCTTCCGCAACAAGCACATCATGTGCGACTTCGGCACCGGCAAC AACAATAAGCTCAACTGGGTCCTCGAGGACAAGCAGGAGCTCATCGACATCATCGAGACGGTCTACCGCGGCGCC AAAAAGGGCAGAGGTCTCGTCGTCAGCCCCAAGGGTCAGTCCTCCTCTACCTCGCATAGTCCTCGTGTCCTTTCC AAAGTTACCCGTTTGGCTGATGGGAAAACGGCTTGCTGCTGCAGACTACTCGACCCGCCACCGCTACTGA |