© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2148 |
| Gene name | |
| Location | Contig_15:46987..47422 |
| Strand | + |
| Gene length (bp) | 435 |
| Transcript length (bp) | 435 |
| Coding sequence length (bp) | 435 |
| Protein length (aa) | 145 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.4735 | 0.6433 | 0.0759 | 0.0669 | 0.4521 | 0.0181 | 0.1909 | 0.1364 | 0.1652 | 0.0314 |
| Orthofinder run ID | 4 |
| Orthogroup | 6552 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis 1348a (Ghana) | OphauG2|3015 |
| Ophiocordyceps australis map64 (Brazil) | OphauB2|5791 |
| Ophiocordyceps subramaniannii | Hirsu2|2148 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2148 MPFRISDCTAEDAPGLAAVLYADWLDPDPWTKVCYGGVDAQEQRAHLEAVIREDLVNPEYPVAFQKAQDEETGEI AGFTQLTNLNVPPNERSHVDPIPKPAGYNVPPIRDYYAKMSAARKRAMGDDPFLREYNYVSRHDSGRGG* |
| Coding | >Hirsu2|2148 ATGCCGTTCCGGATCTCCGACTGTACCGCTGAGGACGCGCCCGGGCTGGCAGCAGTCTTGTACGCCGACTGGCTG GATCCCGATCCCTGGACGAAGGTGTGCTACGGGGGGGTAGATGCTCAGGAGCAACGCGCTCACTTGGAAGCCGTC ATTCGCGAGGATCTCGTCAACCCCGAGTATCCGGTTGCCTTTCAGAAGGCACAGGACGAGGAAACGGGCGAGATC GCGGGCTTCACTCAGCTCACAAACCTCAACGTGCCTCCCAATGAGCGCAGTCATGTGGATCCCATCCCGAAGCCC GCGGGCTACAACGTGCCGCCAATTCGCGACTACTATGCAAAGATGTCCGCGGCCAGGAAGCGTGCCATGGGGGAC GACCCATTCCTCCGTGAGTACAACTACGTCTCCCGCCACGATTCGGGGCGTGGCGGTTGA |
| Transcript | >Hirsu2|2148 ATGCCGTTCCGGATCTCCGACTGTACCGCTGAGGACGCGCCCGGGCTGGCAGCAGTCTTGTACGCCGACTGGCTG GATCCCGATCCCTGGACGAAGGTGTGCTACGGGGGGGTAGATGCTCAGGAGCAACGCGCTCACTTGGAAGCCGTC ATTCGCGAGGATCTCGTCAACCCCGAGTATCCGGTTGCCTTTCAGAAGGCACAGGACGAGGAAACGGGCGAGATC GCGGGCTTCACTCAGCTCACAAACCTCAACGTGCCTCCCAATGAGCGCAGTCATGTGGATCCCATCCCGAAGCCC GCGGGCTACAACGTGCCGCCAATTCGCGACTACTATGCAAAGATGTCCGCGGCCAGGAAGCGTGCCATGGGGGAC GACCCATTCCTCCGTGAGTACAACTACGTCTCCCGCCACGATTCGGGGCGTGGCGGTTGA |
| Gene | >Hirsu2|2148 ATGCCGTTCCGGATCTCCGACTGTACCGCTGAGGACGCGCCCGGGCTGGCAGCAGTCTTGTACGCCGACTGGCTG GATCCCGATCCCTGGACGAAGGTGTGCTACGGGGGGGTAGATGCTCAGGAGCAACGCGCTCACTTGGAAGCCGTC ATTCGCGAGGATCTCGTCAACCCCGAGTATCCGGTTGCCTTTCAGAAGGCACAGGACGAGGAAACGGGCGAGATC GCGGGCTTCACTCAGCTCACAAACCTCAACGTGCCTCCCAATGAGCGCAGTCATGTGGATCCCATCCCGAAGCCC GCGGGCTACAACGTGCCGCCAATTCGCGACTACTATGCAAAGATGTCCGCGGCCAGGAAGCGTGCCATGGGGGAC GACCCATTCCTCCGTGAGTACAACTACGTCTCCCGCCACGATTCGGGGCGTGGCGGTTGA |