Protein ID | Hirsu2|2143 |
Gene name | |
Location | Contig_15:39164..39950 |
Strand | - |
Gene length (bp) | 786 |
Transcript length (bp) | 729 |
Coding sequence length (bp) | 729 |
Protein length (aa) | 243 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.1566 | 0.212 | 0.4822 | 0.2815 | 0.1249 | 0.0196 | 0.5111 | 0.3577 | 0.6899 | 0.0258 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 47 | 69 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1966 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2143 MDKSTAHFFRPLWQRVKNASKSRSKQVQKRSNGERSRFRIVQEAQRNGGMVAAILILSVLTIVVEIAAHAGPSVS PDRPPWPQRASHQEQVPVHLTRNHCGSSTAEAQELGCRFDELSFAWQVPECFDQRTIDEFLAAGRWEYFTDDEGK TKVPHDDLALTLGREAAVHVTWAFHITHCLYLRRQMVRVLERGGAMDNHLGAYKHTVHCGKTMLNSAGMADNLHT QAPVIYPLCKPLRDWRA* |
Coding | >Hirsu2|2143 ATGGACAAGTCTACGGCACACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAG CAAGTTCAGAAGCGGAGCAATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATG GTTGCGGCAATACTGATCCTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCT CCCGATAGACCGCCGTGGCCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGC GGCTCCTCGACAGCGGAGGCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAG TGCTTCGACCAGAGGACCATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAG ACAAAGGTGCCGCACGACGATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCAC ATCACCCATTGCCTCTATCTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTC GGGGCGTACAAGCACACAGTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACG CAGGCACCGGTTATCTACCCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |
Transcript | >Hirsu2|2143 ATGGACAAGTCTACGGCACACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAG CAAGTTCAGAAGCGGAGCAATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATG GTTGCGGCAATACTGATCCTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCT CCCGATAGACCGCCGTGGCCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGC GGCTCCTCGACAGCGGAGGCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAG TGCTTCGACCAGAGGACCATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAG ACAAAGGTGCCGCACGACGATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCAC ATCACCCATTGCCTCTATCTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTC GGGGCGTACAAGCACACAGTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACG CAGGCACCGGTTATCTACCCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |
Gene | >Hirsu2|2143 ATGGACAAGTCTACGGGTAAGCAGCGTAACGCAGGGACCTATTGATGAGCTATGGCTGAACTGGCGAGCCAAGCA CACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAGCAAGTTCAGAAGCGGAGC AATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATGGTTGCGGCAATACTGATC CTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCTCCCGATAGACCGCCGTGG CCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGCGGCTCCTCGACAGCGGAG GCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAGTGCTTCGACCAGAGGACC ATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAGACAAAGGTGCCGCACGAC GATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCACATCACCCATTGCCTCTAT CTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTCGGGGCGTACAAGCACACA GTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACGCAGGCACCGGTTATCTAC CCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |