© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2143 |
| Gene name | |
| Location | Contig_15:39164..39950 |
| Strand | - |
| Gene length (bp) | 786 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.1566 | 0.212 | 0.4822 | 0.2815 | 0.1249 | 0.0196 | 0.5111 | 0.3577 | 0.6899 | 0.0258 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 69 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1966 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2143 MDKSTAHFFRPLWQRVKNASKSRSKQVQKRSNGERSRFRIVQEAQRNGGMVAAILILSVLTIVVEIAAHAGPSVS PDRPPWPQRASHQEQVPVHLTRNHCGSSTAEAQELGCRFDELSFAWQVPECFDQRTIDEFLAAGRWEYFTDDEGK TKVPHDDLALTLGREAAVHVTWAFHITHCLYLRRQMVRVLERGGAMDNHLGAYKHTVHCGKTMLNSAGMADNLHT QAPVIYPLCKPLRDWRA* |
| Coding | >Hirsu2|2143 ATGGACAAGTCTACGGCACACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAG CAAGTTCAGAAGCGGAGCAATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATG GTTGCGGCAATACTGATCCTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCT CCCGATAGACCGCCGTGGCCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGC GGCTCCTCGACAGCGGAGGCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAG TGCTTCGACCAGAGGACCATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAG ACAAAGGTGCCGCACGACGATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCAC ATCACCCATTGCCTCTATCTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTC GGGGCGTACAAGCACACAGTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACG CAGGCACCGGTTATCTACCCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |
| Transcript | >Hirsu2|2143 ATGGACAAGTCTACGGCACACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAG CAAGTTCAGAAGCGGAGCAATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATG GTTGCGGCAATACTGATCCTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCT CCCGATAGACCGCCGTGGCCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGC GGCTCCTCGACAGCGGAGGCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAG TGCTTCGACCAGAGGACCATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAG ACAAAGGTGCCGCACGACGATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCAC ATCACCCATTGCCTCTATCTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTC GGGGCGTACAAGCACACAGTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACG CAGGCACCGGTTATCTACCCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |
| Gene | >Hirsu2|2143 ATGGACAAGTCTACGGGTAAGCAGCGTAACGCAGGGACCTATTGATGAGCTATGGCTGAACTGGCGAGCCAAGCA CACTTCTTCCGGCCCCTCTGGCAGCGGGTGAAGAACGCGTCAAAGTCACGGTCAAAGCAAGTTCAGAAGCGGAGC AATGGCGAGCGCAGCAGATTCCGCATCGTGCAAGAAGCGCAACGAAACGGCGGCATGGTTGCGGCAATACTGATC CTCTCGGTCTTGACTATCGTCGTCGAGATCGCTGCTCACGCCGGCCCCTCTGTCTCTCCCGATAGACCGCCGTGG CCGCAGAGGGCAAGCCACCAGGAACAGGTCCCAGTCCACCTGACGCGGAACCACTGCGGCTCCTCGACAGCGGAG GCGCAAGAGCTGGGCTGCCGCTTTGACGAGCTCAGCTTCGCCTGGCAGGTCCCCGAGTGCTTCGACCAGAGGACC ATCGACGAGTTTCTGGCGGCCGGCCGGTGGGAGTACTTCACGGACGACGAGGGCAAGACAAAGGTGCCGCACGAC GATCTAGCCCTCACCCTTGGCCGCGAGGCCGCCGTGCACGTCACTTGGGCGTTCCACATCACCCATTGCCTCTAT CTGCGGCGGCAGATGGTCAGGGTGCTCGAGCGTGGAGGGGCAATGGACAACCACCTCGGGGCGTACAAGCACACA GTCCACTGCGGCAAGACGATGCTCAACTCAGCTGGCATGGCGGACAATCTGCACACGCAGGCACCGGTTATCTAC CCGTTGTGCAAACCGCTGCGGGATTGGAGGGCTTAA |